Rroxscaffold_7G00181600

Protein BREAST CANCER SUSCEPTIBILITY 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007909
Physical Location & Seq
Forward (+)
20672893 .. 20678878
5986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00181600.1

Sequence Viewer

Length: 2124 bp
ATGGCCGAGCCCTCCGCCAAGCACTCTTCAGATTCCGGAAACTGCCGCGACGGCGTCGTTTCGCCGATGAACAAGAACCCCCTCACGTTTCATCTCCAGAAGCTCGGCCTCGAGCTCACTTGCCCTCTCTGCCTAGGGTTTTTTAATCGGCCGACATTGCTTCCCTGCAATCACATCTTCTGCAACAACTGTGTGCCCAATCGGACCAATTTTGGAGCAGAGTGTCCTCTGTGTAATATCCAAGTTCCTGGTCAAGATCTGAGGCATGCGCCTTTCATGGAAAGCATAGTAGCAATCTACAAAAGCATGAAGGCCACTTACTGTACCAACTCTTCAGATGTTAGAACAGCTTTGGGTCAAAACCCGGTTTCACCTGATGTCAGTTTTGCTGGGAAATCGACTAAAGAACCGTTTGACCATTGCCAAGAGCGTAAATCAGAAAGTGCTCAGACCATTGTTTCATCAAGGGGTAATAAGCGAGTATGGGTTCCATGTAGTCAGAAACATTCTGTTGCAGATGGAATTGGCAAGCATGGCAAACTAGATAACTGTAGCATAGCAATAGATGGTAACAGCAAAGAATTTGAGTTGGGTAGAGGACGTAAATTTAATGGTGGATTAAATCCCAATTCACCATTACCAAGTTCTCAAATAAGATCTGTGGGACTGGACGAGTGTATGACTTCAGAAAGAGACATGAATCCAGTAGTGCAGGCATTGCTGGATAGTCCTCCTTCATTTGGTGATGCCAAATGTTCAGATAATGATAATAGCTTTGACCAGTGCTCTGAGCAAATTTCAGACAGTTTGATCAGGGGGTCAATGAGGAAAATTGATGATAGAACAGGGCAGATGAGGCCTGATAGTTCTGCATCTGATACTGATGGTCATTTGAGGGAACTCAAGAGACAGAAGAAACTGGACTATGGGCCAGTCTCAGGGACTAATTCTGAGCTGGAACTTAAATTCAGAACACCTTCTAATGAGTCTTTCACAAATAACACCATTTGTGCATTTTGCCAGTCTTCCACAATCTCAGAGGTCACTGGGCCAATGTTGCACTATTCCAAGGGAAAATTGGTGGAGGGAGATGAGGCAACTGTTTCAGATGTCATACATGTTCACAAAATATGCATTGATTGGGCACCACAAGTGTTCTTTAAAGATGAAACCATTAAAAATTTGAAGGCGGAAGTGACAAGGGGTGCAAGATTAAAATGCACAAAATGTGGGATAAAGGGAGCAGCCTTGGGATGCTTTGTGAAATCCTGCCGAAGAAGCTATCATGTTACCTGTGCAATTGAAATTTCTAAGTGCCGTTGGGATTATGAAAGCTTTCTGCTGCTGTGTCCAGCACATTGTTCAGTTAAATTTCCCAATGAGAAGTTGAATCGTAACAAGCACAAAAATTGTCAGCTCTCCGACAGTAGAGTCGCTTCAAATGGAGTGAACAACTGGGTTTTATGCCCTTCTGGTTTGTCTTCTGAAGAGAAGATTTTTCTTATCAAATTTGCTGAGATGAATGGTGCAACTTTGTCCAAGAGCTGGACACCTGATGTTACACATGTGATTGCTGCCCTGGATGGGGATGGTGCATATGTCCGGACGTTTAAAATTTTCATGGCCATTTTGGCAGGAAAATGGATAGTGACATTTGACTGGGTAAAAGCATGTATGGAAAATAAGCATCATGTGGATGAAGAACCTTATGAAGTTAGTCTTGATAACTATGGGAGTTGCAGTGGTGCCAAAGCTGGCAGGCTTAGGGCATTAAGCAATGATCCGAAGCTCTTTAATGGTTTGAATTTCTATTTTGCTGGTGATTTTATACTGGAACGGAAGGAAGACTACAAAGAATTGGTCATAGCTGCAGGTGGTACTGTTTTCAACAGTAAGGAAGATGTGCTTGAAGCAAGTTGTCATGAAAAGGGAACTTCGAGGACACTAGTTGTGTACAACCTTGACCCCCCACCAGGGTGCAAGTTGGGGGAAGAAGTTTCAATACTTTGGCAAAGGTCTAACGAGGCACAAGATATAGCTGCAAAAATTGGAGCTGAATACGTCTTTCACACATGGTTGTTGGAGTCAATTGCGAGATATGAGTTGCAGCCAATTGTATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000152 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009628 GO:0009653 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009934 GO:0009987 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010212 GO:0010332 GO:0010468 GO:0010492 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010565 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0010639 GO:0016020 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019827 GO:0022603 GO:0022607 GO:0022622 GO:0031056 GO:0031057 GO:0031058 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031401 GO:0031436 GO:0032259 GO:0032268 GO:0032269 GO:0032270 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034622 GO:0034641 GO:0034968 GO:0035065 GO:0035066 GO:0035067 GO:0036211 GO:0042127 GO:0042304 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045717 GO:0045787 GO:0045833 GO:0045892 GO:0045893 GO:0045922 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046890 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051055 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051716 GO:0051726 GO:0060255 GO:0062012 GO:0062014 GO:0065003 GO:0065004 GO:0065007 GO:0070531 GO:0070647 GO:0071156 GO:0071158 GO:0071214 GO:0071478 GO:0071479 GO:0071480 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0080090 GO:0080182 GO:0090068 GO:0090304 GO:0097159 GO:0098727 GO:0099402 GO:0104004 GO:0140096 GO:1901360 GO:1901363 GO:1901564 GO:1901983 GO:1901984 GO:1901985 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1905269 GO:1905392 GO:1990234 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2000758 GO:2001141 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03440 ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map03440 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169
Pfam Domains
Protein Families
BRCT BRCT_2 zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-HC5HC2H zf-RING_UBOX

Protein Analysis

707

Amino Acids

78.15

Weight (kDa)

6.99

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4 PF00097 41 - 78 2.3e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 41 - 78 2.9e-06 Zinc finger, C3HC4 type (RING finger)
zf-HC5HC2H_2 PF13832 368 - 435 2.2e-07 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 375 - 453 2.1e-09 PHD-like zinc-binding domain
BRCT PF00533 489 - 559 1.5e-10 BRCA1 C Terminus (BRCT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1862
AasI GACNNNNNNGTC 1 cut(s) 1430
Acc36I ACCTGC 1 cut(s) 1862
AccB1I GGYRCC 2 cut(s) 1144, 1745
AccB7I CCANNNNNTGG 1 cut(s) 1545
AccII CGCG 1 cut(s) 48
AccIII TCCGGA 2 cut(s) 35, 1602
AciI CCGC 3 cut(s) 15, 46, 1190
AclWI GGATC 1 cut(s) 1775
AcoI YGGCCR 3 cut(s) 3, 149, 1623
AcuI CTGAAG 4 cut(s) 12, 318, 669, 1506
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 3 cut(s) 325, 1879, 1955
AfiI CCNNNNNNNGG 7 cut(s) 740, 938, 1545, 1584, 1585, 1973, 1974
AflIII ACRYGT 2 cut(s) 1117, 1564
AgsI TTSAA 8 cut(s) 1186, 1304, 1390, 1440, 1804, 1888, 1910, 2001
AhlI ACTAGT 1 cut(s) 1945
AjnI CCWGG 3 cut(s) 247, 1578, 1972
AleI CACNNNNGTG 1 cut(s) 1975
Alw21I GWGCWC 3 cut(s) 117, 448, 788
Alw26I GTCTC 3 cut(s) 687, 901, 940
AlwI GGATC 1 cut(s) 1775
Ama87I CYCGRG 1 cut(s) 110
Aor13HI TCCGGA 2 cut(s) 35, 1602
AoxI GGCC 8 cut(s) 3, 106, 149, 312, 857, 929, 1049, 1623
ApeKI GCWGC 6 cut(s) 1244, 1342, 1574, 1868, 2039, 2107
ArsI GACNNNNNNTTYG 2 cut(s) 1845, 1877
Asp700I GAANNNNTTC 2 cut(s) 976, 1335
AspA2I CCTAGG 1 cut(s) 133
AspLEI GCGC 1 cut(s) 271
AspS9I GGNCC 3 cut(s) 204, 929, 1049
AsuC2I CCSGG 1 cut(s) 365
AsuHPI GGTGA 4 cut(s) 363, 624, 755, 1832
AvaI CYCGRG 1 cut(s) 110
AvaII GGWCC 1 cut(s) 204
AvrII CCTAGG 1 cut(s) 133
BaeGI GKGCMC 2 cut(s) 198, 1147
BalI TGGCCA 1 cut(s) 1625
BanI GGYRCC 2 cut(s) 1144, 1745
BanII GRGCYC 2 cut(s) 12, 117
BbsI GAAGAC 3 cut(s) 1017, 1473, 1851
Bbv12I GWGCWC 3 cut(s) 117, 448, 788
BbvI GCAGC 6 cut(s) 1256, 1329, 1561, 1855, 2026, 2119
BccI CCATC 5 cut(s) 512, 560, 878, 1577, 1583
BceAI ACGGC 2 cut(s) 67, 1302
BciT130I CCWGG 3 cut(s) 249, 1580, 1974
BclI TGATCA 1 cut(s) 810
BcnI CCSGG 1 cut(s) 365
BcoDI GTCTC 3 cut(s) 687, 901, 940
BcuI ACTAGT 1 cut(s) 1945
BfaI CTAG 3 cut(s) 134, 542, 1946
BfmI CTRYAG 2 cut(s) 550, 1869
BfuAI ACCTGC 1 cut(s) 1862
BglI GCCNNNNNGGC 2 cut(s) 51, 1631
BglII AGATCT 2 cut(s) 256, 656
BisI GCNGC 7 cut(s) 46, 1245, 1343, 1575, 1869, 2040, 2108
BlnI CCTAGG 1 cut(s) 133
BlsI GCNGC 7 cut(s) 47, 1246, 1344, 1576, 1870, 2041, 2109
Bme1390I CCNGG 4 cut(s) 249, 365, 1580, 1974
Bme18I GGWCC 1 cut(s) 204
BmeT110I CYCGRG 1 cut(s) 110
BmgT120I GGNCC 3 cut(s) 204, 929, 1049
BmiI GGNNCC 3 cut(s) 489, 1146, 1747
BmrFI CCNGG 4 cut(s) 249, 365, 1580, 1974
BmrI ACTGGG 3 cut(s) 1056, 1465, 1669
BmsI GCATC 4 cut(s) 736, 881, 1244, 1696
BmuI ACTGGG 3 cut(s) 1056, 1465, 1669
BpiI GAAGAC 3 cut(s) 1017, 1473, 1851
BpmI CTGGAG 1 cut(s) 80
Bpu10I CCTNAGC 1 cut(s) 1763
BpuEI CTTGAG 1 cut(s) 887
BpuMI CCSGG 1 cut(s) 365
BsaHI GRCGYC 1 cut(s) 54
BsaJI CCNNGG 5 cut(s) 133, 1068, 1248, 1578, 1973
BsaWI WCCGGW 2 cut(s) 35, 1602
BsaXI ACNNNNNCTCC 2 cut(s) 1726, 1756
Bsc4I CCNNNNNNNGG 7 cut(s) 740, 938, 1545, 1584, 1585, 1973, 1974
Bse3DI GCAATG 4 cut(s) 155, 418, 716, 1783
BseAI TCCGGA 2 cut(s) 35, 1602
BseBI CCWGG 3 cut(s) 249, 1580, 1974
BseDI CCNNGG 5 cut(s) 133, 1068, 1248, 1578, 1973
BseGI GGATG 4 cut(s) 1259, 1588, 1594, 1702
BseLI CCNNNNNNNGG 7 cut(s) 740, 938, 1545, 1584, 1585, 1973, 1974
BseMI GCAATG 4 cut(s) 155, 418, 716, 1783
BseMII CTCAG 7 cut(s) 251, 461, 780, 942, 951, 1050, 1506
BseSI GKGCMC 2 cut(s) 198, 1147
BseX3I CGGCCG 1 cut(s) 149
BseXI GCAGC 6 cut(s) 1256, 1329, 1561, 1855, 2026, 2119
BseYI CCCAGC 1 cut(s) 389
BsgI GTGCAG 1 cut(s) 731
Bsh1236I CGCG 1 cut(s) 48
Bsh1285I CGRYCG 1 cut(s) 152
BshFI GGCC 8 cut(s) 5, 108, 151, 314, 859, 931, 1051, 1625
BshNI GGYRCC 2 cut(s) 1144, 1745
BsiEI CGRYCG 1 cut(s) 152
BsiHKAI GWGCWC 3 cut(s) 117, 448, 788
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 3 cut(s) 36, 365, 1603
BslFI GGGAC 2 cut(s) 678, 955
BslI CCNNNNNNNGG 7 cut(s) 740, 938, 1545, 1584, 1585, 1973, 1974
BsmAI GTCTC 3 cut(s) 687, 901, 940
BsmFI GGGAC 2 cut(s) 678, 955
BsnI GGCC 8 cut(s) 5, 108, 151, 314, 859, 931, 1051, 1625
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 6 cut(s) 12, 117, 198, 448, 788, 1147
Bsp13I TCCGGA 2 cut(s) 35, 1602
Bsp1407I TGTACA 1 cut(s) 1953
Bsp143I GATC 4 cut(s) 256, 656, 810, 1780
BspACI CCGC 3 cut(s) 15, 46, 1190
BspANI GGCC 8 cut(s) 5, 108, 151, 314, 859, 931, 1051, 1625
BspCNI CTCAG 7 cut(s) 252, 460, 781, 943, 950, 1049, 1507
BspEI TCCGGA 2 cut(s) 35, 1602
BspFNI CGCG 1 cut(s) 48
BspHI TCATGA 1 cut(s) 1921
BspLI GGNNCC 3 cut(s) 489, 1146, 1747
BspMAI CTGCAG 1 cut(s) 1873
BspMI ACCTGC 1 cut(s) 1862
BspPI GGATC 1 cut(s) 1775
BspT107I GGYRCC 2 cut(s) 1144, 1745
BsrDI GCAATG 4 cut(s) 155, 418, 716, 1783
BsrGI TGTACA 1 cut(s) 1953
BssECI CCNNGG 5 cut(s) 133, 1068, 1248, 1578, 1973
BssMI GATC 4 cut(s) 256, 656, 810, 1780
BssNI GRCGYC 1 cut(s) 54
BssT1I CCWWGG 3 cut(s) 133, 1068, 1248
Bst2UI CCWGG 3 cut(s) 249, 1580, 1974
Bst4CI ACNGT 9 cut(s) 191, 323, 411, 551, 806, 1102, 1427, 1882, 1892
Bst6I CTCTTC 3 cut(s) 31, 337, 1482
BstACI GRCGYC 1 cut(s) 54
BstAPI GCANNNNNTGC 1 cut(s) 718
BstAUI TGTACA 1 cut(s) 1953
BstC8I GCNNGC 5 cut(s) 267, 530, 714, 1756, 1760
BstDEI CTNAG 9 cut(s) 260, 447, 789, 937, 951, 1036, 1311, 1515, 1763
BstF5I GGATG 4 cut(s) 1259, 1588, 1594, 1702
BstFNI CGCG 1 cut(s) 48
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 4 cut(s) 259, 659, 813, 1783
BstMAI GTCTC 3 cut(s) 687, 901, 940
BstMBI GATC 4 cut(s) 256, 656, 810, 1780
BstMCI CGRYCG 1 cut(s) 152
BstMWI GCNNNNNNNGC 9 cut(s) 51, 129, 157, 534, 718, 856, 1057, 1278, 1631
BstNI CCWGG 3 cut(s) 249, 1580, 1974
BstNSI RCATGY 4 cut(s) 269, 1121, 1568, 1674
BstSCI CCNGG 4 cut(s) 247, 363, 1578, 1972
BstSFI CTRYAG 2 cut(s) 550, 1869
BstSLI GKGCMC 2 cut(s) 198, 1147
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 6 cut(s) 1256, 1329, 1561, 1855, 2026, 2119
BstV2I GAAGAC 3 cut(s) 1017, 1473, 1851
BstX2I RGATCY 2 cut(s) 256, 656
BstXI CCANNNNNNTGG 1 cut(s) 248
BstYI RGATCY 2 cut(s) 256, 656
BstZI CGGCCG 1 cut(s) 149
BsuRI GGCC 8 cut(s) 5, 108, 151, 314, 859, 931, 1051, 1625
BtsCI GGATG 4 cut(s) 1259, 1588, 1594, 1702
BtsI GCAGTG 1 cut(s) 1747
BtsIMutI CAGTG 3 cut(s) 788, 1044, 1747
BveI ACCTGC 1 cut(s) 1862
Cac8I GCNNGC 5 cut(s) 267, 530, 714, 1756, 1760
CciI TCATGA 1 cut(s) 1921
CfoI GCGC 1 cut(s) 271
Cfr13I GGNCC 3 cut(s) 204, 929, 1049
CseI GACGC 1 cut(s) 43
Csp6I GTAC 3 cut(s) 324, 1878, 1954
CviQI GTAC 3 cut(s) 324, 1878, 1954
DdeI CTNAG 9 cut(s) 260, 447, 789, 937, 951, 1036, 1311, 1515, 1763
DpnI GATC 4 cut(s) 258, 658, 812, 1782
DpnII GATC 4 cut(s) 256, 656, 810, 1780
DraI TTTAAA 2 cut(s) 1162, 1612
DrdI GACNNNNNNGTC 1 cut(s) 1430
DseDI GACNNNNNNGTC 1 cut(s) 1430
EaeI YGGCCR 3 cut(s) 3, 149, 1623
EagI CGGCCG 1 cut(s) 149
Eam1104I CTCTTC 3 cut(s) 31, 337, 1482
EarI CTCTTC 3 cut(s) 31, 337, 1482
EciI GGCGGA 2 cut(s) 4, 1205
Ecl136II GAGCTC 1 cut(s) 115
EclXI CGGCCG 1 cut(s) 149
Eco130I CCWWGG 3 cut(s) 133, 1068, 1248
Eco147I AGGCCT 1 cut(s) 859
Eco24I GRGCYC 2 cut(s) 12, 117
Eco47I GGWCC 1 cut(s) 204
Eco52I CGGCCG 1 cut(s) 149
Eco53kI GAGCTC 1 cut(s) 115
Eco57I CTGAAG 4 cut(s) 12, 318, 669, 1506
Eco88I CYCGRG 1 cut(s) 110
EcoICRI GAGCTC 1 cut(s) 115
EcoRII CCWGG 3 cut(s) 247, 1578, 1972
EcoT14I CCWWGG 3 cut(s) 133, 1068, 1248
EcoT22I ATGCAT 1 cut(s) 1136
EcoT38I GRGCYC 2 cut(s) 12, 117
ErhI CCWWGG 3 cut(s) 133, 1068, 1248
FalI AAGNNNNNCTT 4 cut(s) 1704, 1736, 1890, 1922
FaqI GGGAC 2 cut(s) 678, 955
FauNDI CATATG 1 cut(s) 1597
FbaI TGATCA 1 cut(s) 810
Fnu4HI GCNGC 7 cut(s) 46, 1245, 1343, 1575, 1869, 2040, 2108
FokI GGATG 4 cut(s) 1266, 1595, 1601, 1709
FriOI GRGCYC 2 cut(s) 12, 117
Fsp4HI GCNGC 7 cut(s) 46, 1245, 1343, 1575, 1869, 2040, 2108
FspBI CTAG 3 cut(s) 134, 542, 1946
GlaI GCGC 1 cut(s) 270
GluI GCNGC 7 cut(s) 46, 1245, 1343, 1575, 1869, 2040, 2108
GsaI CCCAGC 1 cut(s) 393
GsuI CTGGAG 1 cut(s) 80
HaeIII GGCC 8 cut(s) 5, 108, 151, 314, 859, 931, 1051, 1625
HapII CCGG 3 cut(s) 36, 365, 1603
HgaI GACGC 1 cut(s) 43
HhaI GCGC 1 cut(s) 271
Hin1I GRCGYC 1 cut(s) 54
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HindIII AAGCTT 1 cut(s) 1333
HinfI GANTC 6 cut(s) 32, 700, 986, 1390, 1431, 2084
HpaII CCGG 3 cut(s) 36, 365, 1603
HphI GGTGA 4 cut(s) 363, 624, 755, 1832
Hpy166II GTNNAC 3 cut(s) 1123, 1450, 1954
Hpy188III TCNNGA 7 cut(s) 36, 97, 254, 904, 1603, 1721, 1922
Hpy8I GTNNAC 3 cut(s) 1123, 1450, 1954
Hpy99I CGWCG 2 cut(s) 53, 59
HpyAV CCTTC 6 cut(s) 304, 744, 987, 1180, 1479, 1834
HpyCH4III ACNGT 9 cut(s) 191, 323, 411, 551, 806, 1102, 1427, 1882, 1892
HpyCH4IV ACGT 4 cut(s) 86, 601, 1607, 2061
HpyF10VI GCNNNNNNNGC 9 cut(s) 51, 129, 157, 534, 718, 856, 1057, 1278, 1631
HpyF3I CTNAG 9 cut(s) 260, 447, 789, 937, 951, 1036, 1311, 1515, 1763
HpySE526I ACGT 4 cut(s) 86, 601, 1607, 2061
Hsp92I GRCGYC 1 cut(s) 54
HspAI GCGC 1 cut(s) 269
Kpn2I TCCGGA 2 cut(s) 35, 1602
Ksp22I TGATCA 1 cut(s) 810
Kzo9I GATC 4 cut(s) 256, 656, 810, 1780
LmnI GCTCC 3 cut(s) 215, 1241, 2051
Lsp1109I GCAGC 6 cut(s) 1256, 1329, 1561, 1855, 2026, 2119
LweI GCATC 4 cut(s) 736, 881, 1244, 1696
MaeI CTAG 3 cut(s) 134, 542, 1946
MaeII ACGT 4 cut(s) 86, 601, 1607, 2061
MaeIII GTNAC 7 cut(s) 569, 1042, 1195, 1288, 1394, 1558, 1648
MalI GATC 4 cut(s) 258, 658, 812, 1782
MboI GATC 4 cut(s) 256, 656, 810, 1780
MfeI CAATTG 3 cut(s) 1299, 2088, 2112
MflI RGATCY 2 cut(s) 256, 656
MhlI GDGCHC 6 cut(s) 12, 117, 198, 448, 788, 1147
MlsI TGGCCA 1 cut(s) 1625
MluNI TGGCCA 1 cut(s) 1625
MlyI GAGTC 3 cut(s) 995, 1440, 2093
MmeI TCCRAC 2 cut(s) 1446, 2061
Mox20I TGGCCA 1 cut(s) 1625
Mph1103I ATGCAT 1 cut(s) 1136
MroI TCCGGA 2 cut(s) 35, 1602
MroXI GAANNNNTTC 2 cut(s) 976, 1335
MscI TGGCCA 1 cut(s) 1625
MslI CAYNNNNRTG 2 cut(s) 1695, 1975
Msp20I TGGCCA 1 cut(s) 1625
MspI CCGG 3 cut(s) 36, 365, 1603
MspR9I CCNGG 4 cut(s) 249, 365, 1580, 1974
MunI CAATTG 3 cut(s) 1299, 2088, 2112
MvaI CCWGG 3 cut(s) 249, 1580, 1974
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 9 cut(s) 51, 129, 157, 534, 718, 856, 1057, 1278, 1631
NciI CCSGG 1 cut(s) 365
NdeI CATATG 1 cut(s) 1597
NdeII GATC 4 cut(s) 256, 656, 810, 1780
NlaIV GGNNCC 3 cut(s) 489, 1146, 1747
NmeAIII GCCGAG 2 cut(s) 31, 84
NmuCI GTSAC 3 cut(s) 1042, 1195, 1648
NsiI ATGCAT 1 cut(s) 1136
NspI RCATGY 4 cut(s) 269, 1121, 1568, 1674
OliI CACNNNNGTG 1 cut(s) 1975
PaeI GCATGC 1 cut(s) 269
PaeR7I CTCGAG 1 cut(s) 110
PagI TCATGA 1 cut(s) 1921
PaqCI CACCTGC 1 cut(s) 1862
PceI AGGCCT 1 cut(s) 859
PciI ACATGT 2 cut(s) 1117, 1564
PdmI GAANNNNTTC 2 cut(s) 976, 1335
PfeI GAWTC 3 cut(s) 32, 700, 1390
PflFI GACNNNGTC 1 cut(s) 53
PflMI CCANNNNNTGG 1 cut(s) 1545
PkrI GCNGC 7 cut(s) 47, 1246, 1344, 1576, 1870, 2041, 2109
PleI GAGTC 3 cut(s) 994, 1439, 2092
PpsI GAGTC 3 cut(s) 994, 1439, 2092
PscI ACATGT 2 cut(s) 1117, 1564
Psp124BI GAGCTC 1 cut(s) 117
Psp6I CCWGG 3 cut(s) 247, 1578, 1972
PspFI CCCAGC 1 cut(s) 389
PspGI CCWGG 3 cut(s) 247, 1578, 1972
PspN4I GGNNCC 3 cut(s) 489, 1146, 1747
PspPI GGNCC 3 cut(s) 204, 929, 1049
PspXI VCTCGAGB 1 cut(s) 110
PstI CTGCAG 1 cut(s) 1873
PsuI RGATCY 2 cut(s) 256, 656
PsyI GACNNNGTC 1 cut(s) 53
RsaI GTAC 3 cut(s) 325, 1879, 1955
RsaNI GTAC 3 cut(s) 324, 1878, 1954
RseI CAYNNNNRTG 2 cut(s) 1695, 1975
SacI GAGCTC 1 cut(s) 117
SatI GCNGC 7 cut(s) 46, 1245, 1343, 1575, 1869, 2040, 2108
Sau3AI GATC 4 cut(s) 256, 656, 810, 1780
Sau96I GGNCC 3 cut(s) 204, 929, 1049
SchI GAGTC 3 cut(s) 995, 1440, 2093
ScrFI CCNGG 4 cut(s) 249, 365, 1580, 1974
SduI GDGCHC 6 cut(s) 12, 117, 198, 448, 788, 1147
SfaNI GCATC 4 cut(s) 736, 881, 1244, 1696
SfcI CTRYAG 2 cut(s) 550, 1869
Sfr274I CTCGAG 1 cut(s) 110
SinI GGWCC 1 cut(s) 204
SlaI CTCGAG 1 cut(s) 110
SmiMI CAYNNNNRTG 2 cut(s) 1695, 1975
SmlI CTYRAG 2 cut(s) 110, 902
SmoI CTYRAG 2 cut(s) 110, 902
SpeI ACTAGT 1 cut(s) 1945
SphI GCATGC 1 cut(s) 269
SseBI AGGCCT 1 cut(s) 859
SsiI CCGC 3 cut(s) 15, 46, 1190
SspMI CTAG 3 cut(s) 134, 542, 1946
SstI GAGCTC 1 cut(s) 117
StuI AGGCCT 1 cut(s) 859
StyD4I CCNGG 4 cut(s) 247, 363, 1578, 1972
StyI CCWWGG 3 cut(s) 133, 1068, 1248
TaaI ACNGT 9 cut(s) 191, 323, 411, 551, 806, 1102, 1427, 1882, 1892
TaiI ACGT 4 cut(s) 89, 604, 1610, 2064
TaqI TCGA 3 cut(s) 111, 398, 1937
TatI WGTACW 1 cut(s) 1953
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 3 cut(s) 32, 700, 1390
TscAI CASTG 3 cut(s) 788, 1051, 1747
TseFI GTSAC 3 cut(s) 1042, 1195, 1648
TseI GCWGC 6 cut(s) 1244, 1342, 1574, 1868, 2039, 2107
Tsp45I GTSAC 3 cut(s) 1042, 1195, 1648
TspGWI ACGGA 1 cut(s) 1852
TspRI CASTG 3 cut(s) 788, 1051, 1747
Tth111I GACNNNGTC 1 cut(s) 53
Van91I CCANNNNNTGG 1 cut(s) 1545
VpaK11BI GGWCC 1 cut(s) 204
XceI RCATGY 4 cut(s) 269, 1121, 1568, 1674
XcmI CCANNNNNNNNNTGG 1 cut(s) 1075
XhoI CTCGAG 1 cut(s) 110
XmaJI CCTAGG 1 cut(s) 133
XmnI GAANNNNTTC 2 cut(s) 976, 1335
XspI CTAG 3 cut(s) 134, 542, 1946
Zsp2I ATGCAT 1 cut(s) 1136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.