Rh2CG339100

Protein BREAST CANCER SUSCEPTIBILITY 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0007909
Physical Location & Seq
Forward (+)
45129755 .. 45132702
2948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG339100.1

Sequence Viewer

Length: 564 bp
ATGGGAATATGCCCTTGGAAGGTGTCATTCAGTTCGACAAGCCCAGCTCCTCTGCTCGAATCAGAAAATGGGCATAGTTGCAACACATATCCTACGAAAGAAAGCTTTCTGCTGCTGTGTCCAGCACATTGTTCAGTTAAATTTCCCAATGAGAAGTTGAATCGTAACAAGCACAAAAATTGTCAGCTCTCCGACAGTAGAGTCGCTTCAAATGGAGTGAACAACTGGGTTTTATGCCCTTCTGGTTTGTCTTCTGAAGAGAAGATTTGTCTTATCAAATTTGCTGAAATAAATGGTGCAACTTTGTCCAAGAGCTGGACACCTGATGTTACACATGTGATTTCTGCCCTGGAAGGGGATGGTGCATATGTCCGGACGTTTAAAATTTTCATGGCCATTTTCGCAGGAAAATGGATAGTGACAATTGACTGGGTAAAAGCATGTATGGAAACTCAGCATCATGTGGATGAAGAACCTTATGAAGTTAGTCTTGATAACTACGGTTGTCGCAGTGGTGCCAAAGCTGGCAGGCTTACTTTGATGGTTATGTCTGCTTTGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000152 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009628 GO:0009653 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009934 GO:0009987 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010212 GO:0010332 GO:0010468 GO:0010492 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010565 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0010639 GO:0016020 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019827 GO:0022603 GO:0022607 GO:0022622 GO:0031056 GO:0031057 GO:0031058 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031401 GO:0031436 GO:0032259 GO:0032268 GO:0032269 GO:0032270 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034622 GO:0034641 GO:0034968 GO:0035065 GO:0035066 GO:0035067 GO:0036211 GO:0042127 GO:0042304 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045717 GO:0045787 GO:0045833 GO:0045892 GO:0045893 GO:0045922 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046890 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051055 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051716 GO:0051726 GO:0060255 GO:0062012 GO:0062014 GO:0065003 GO:0065004 GO:0065007 GO:0070531 GO:0070647 GO:0071156 GO:0071158 GO:0071214 GO:0071478 GO:0071479 GO:0071480 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0080090 GO:0080182 GO:0090068 GO:0090304 GO:0097159 GO:0098727 GO:0099402 GO:0104004 GO:0140096 GO:1901360 GO:1901363 GO:1901564 GO:1901983 GO:1901984 GO:1901985 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1905269 GO:1905392 GO:1990234 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2000758 GO:2001141 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03440 ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map03440 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169
Pfam Domains
Protein Families
BRCT BRCT_2 PTCB-BRCT zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-HC5HC2H zf-RING_UBOX

Protein Analysis

187

Amino Acids

20.69

Weight (kDa)

7.56

Isoelectric Point (pI)

36.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRCT PF00533 79 - 149 1.3e-09 BRCA1 C Terminus (BRCT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 200
AccB1I GGYRCC 1 cut(s) 515
AccB7I CCANNNNNTGG 1 cut(s) 315
AccIII TCCGGA 1 cut(s) 372
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 3 cut(s) 140, 278, 384
AcuI CTGAAG 1 cut(s) 276
AfiI CCNNNNNNNGG 4 cut(s) 19, 315, 354, 355
AflIII ACRYGT 1 cut(s) 334
AgsI TTSAA 2 cut(s) 160, 210
AjnI CCWGG 1 cut(s) 348
AjuI GAANNNNNNNTTGG 1 cut(s) 30
AluBI AGCT 5 cut(s) 47, 105, 187, 315, 524
AluI AGCT 5 cut(s) 47, 105, 187, 315, 524
Aor13HI TCCGGA 1 cut(s) 372
AoxI GGCC 1 cut(s) 393
ApeKI GCWGC 1 cut(s) 112
ApoI RAATTY 3 cut(s) 140, 278, 384
Asp700I GAANNNNTTC 1 cut(s) 105
BalI TGGCCA 1 cut(s) 395
BanI GGYRCC 1 cut(s) 515
BarI GAAGNNNNNNTAC 2 cut(s) 190, 222
BbsI GAAGAC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 99
BccI CCATC 2 cut(s) 353, 535
BciT130I CCWGG 1 cut(s) 350
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
Bme1390I CCNGG 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 517
BmrFI CCNGG 1 cut(s) 350
BmrI ACTGGG 2 cut(s) 235, 439
BmsI GCATC 1 cut(s) 466
BmuI ACTGGG 2 cut(s) 235, 439
BpiI GAAGAC 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 14, 348
BsaWI WCCGGW 1 cut(s) 372
Bsc4I CCNNNNNNNGG 4 cut(s) 19, 315, 354, 355
Bse1I ACTGG 2 cut(s) 230, 434
BseAI TCCGGA 1 cut(s) 372
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 2 cut(s) 14, 348
BseGI GGATG 2 cut(s) 364, 472
BseLI CCNNNNNNNGG 4 cut(s) 19, 315, 354, 355
BseMII CTCAG 1 cut(s) 467
BseNI ACTGG 2 cut(s) 230, 434
BseRI GAGGAG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 99
BseYI CCCAGC 1 cut(s) 43
BshFI GGCC 1 cut(s) 395
BshNI GGYRCC 1 cut(s) 515
BsiSI CCGG 1 cut(s) 373
BslI CCNNNNNNNGG 4 cut(s) 19, 315, 354, 355
BsnI GGCC 1 cut(s) 395
Bsp13I TCCGGA 1 cut(s) 372
BspANI GGCC 1 cut(s) 395
BspCNI CTCAG 1 cut(s) 466
BspEI TCCGGA 1 cut(s) 372
BspLI GGNNCC 1 cut(s) 517
BspT107I GGYRCC 1 cut(s) 515
BsrI ACTGG 2 cut(s) 230, 434
BssECI CCNNGG 2 cut(s) 14, 348
BssT1I CCWWGG 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 2 cut(s) 197, 503
Bst6I CTCTTC 1 cut(s) 252
BstC8I GCNNGC 2 cut(s) 526, 530
BstDEI CTNAG 1 cut(s) 453
BstF5I GGATG 2 cut(s) 364, 472
BstMWI GCNNNNNNNGC 1 cut(s) 401
BstNI CCWGG 1 cut(s) 350
BstNSI RCATGY 2 cut(s) 338, 444
BstSCI CCNGG 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 99
BstV2I GAAGAC 1 cut(s) 243
BsuRI GGCC 1 cut(s) 395
BtsCI GGATG 2 cut(s) 364, 472
BtsI GCAGTG 1 cut(s) 517
BtsIMutI CAGTG 1 cut(s) 517
Cac8I GCNNGC 2 cut(s) 526, 530
CviAII CATG 4 cut(s) 335, 391, 441, 461
CviJI RGCY 8 cut(s) 42, 47, 105, 187, 315, 395, 524, 532
CviKI_1 RGCY 8 cut(s) 42, 47, 105, 187, 315, 395, 524, 532
DdeI CTNAG 1 cut(s) 453
DraI TTTAAA 1 cut(s) 382
DrdI GACNNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 200
EaeI YGGCCR 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco130I CCWWGG 1 cut(s) 14
Eco57I CTGAAG 1 cut(s) 276
EcoRII CCWGG 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 14
FaeI CATG 4 cut(s) 338, 394, 444, 464
FalI AAGNNNNNCTT 2 cut(s) 474, 506
FatI CATG 4 cut(s) 334, 390, 440, 460
FauNDI CATATG 1 cut(s) 367
Fnu4HI GCNGC 1 cut(s) 113
FokI GGATG 2 cut(s) 371, 479
Fsp4HI GCNGC 1 cut(s) 113
GluI GCNGC 1 cut(s) 113
GsaI CCCAGC 1 cut(s) 47
HaeIII GGCC 1 cut(s) 395
HapII CCGG 1 cut(s) 373
Hin1II CATG 4 cut(s) 338, 394, 444, 464
HindIII AAGCTT 1 cut(s) 103
HinfI GANTC 3 cut(s) 59, 160, 201
HpaII CCGG 1 cut(s) 373
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 3 cut(s) 64, 193, 256
Hpy188III TCNNGA 2 cut(s) 373, 491
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 3 cut(s) 13, 249, 347
HpyCH4III ACNGT 2 cut(s) 197, 503
HpyCH4IV ACGT 1 cut(s) 377
HpyCH4V TGCA 3 cut(s) 81, 299, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 401
HpyF3I CTNAG 1 cut(s) 453
HpySE526I ACGT 1 cut(s) 377
Hsp92II CATG 4 cut(s) 338, 394, 444, 464
Kpn2I TCCGGA 1 cut(s) 372
LmnI GCTCC 1 cut(s) 52
Lsp1109I GCAGC 1 cut(s) 99
LweI GCATC 1 cut(s) 466
MaeII ACGT 1 cut(s) 377
MaeIII GTNAC 3 cut(s) 164, 328, 418
MboII GAAGA 4 cut(s) 243, 269, 274, 482
MfeI CAATTG 1 cut(s) 423
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 5 cut(s) 140, 178, 278, 384, 423
MluNI TGGCCA 1 cut(s) 395
MlyI GAGTC 1 cut(s) 210
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 2 cut(s) 60, 552
Mox20I TGGCCA 1 cut(s) 395
MroI TCCGGA 1 cut(s) 372
MroXI GAANNNNTTC 1 cut(s) 105
MscI TGGCCA 1 cut(s) 395
MseI TTAA 2 cut(s) 138, 381
MslI CAYNNNNRTG 1 cut(s) 465
Msp20I TGGCCA 1 cut(s) 395
MspI CCGG 1 cut(s) 373
MspR9I CCNGG 1 cut(s) 350
MunI CAATTG 1 cut(s) 423
MvaI CCWGG 1 cut(s) 350
MwoI GCNNNNNNNGC 1 cut(s) 401
NdeI CATATG 1 cut(s) 367
NlaIII CATG 4 cut(s) 338, 394, 444, 464
NlaIV GGNNCC 1 cut(s) 517
NmuCI GTSAC 1 cut(s) 418
NspI RCATGY 2 cut(s) 338, 444
PciI ACATGT 1 cut(s) 334
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 2 cut(s) 59, 160
PflMI CCANNNNNTGG 1 cut(s) 315
PkrI GCNGC 1 cut(s) 114
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PscI ACATGT 1 cut(s) 334
Psp6I CCWGG 1 cut(s) 348
PspFI CCCAGC 1 cut(s) 43
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 1 cut(s) 517
RseI CAYNNNNRTG 1 cut(s) 465
SaqAI TTAA 2 cut(s) 138, 381
SatI GCNGC 1 cut(s) 113
SchI GAGTC 1 cut(s) 210
ScrFI CCNGG 1 cut(s) 350
SfaNI GCATC 1 cut(s) 466
SmiMI CAYNNNNRTG 1 cut(s) 465
Sse9I AATT 5 cut(s) 140, 178, 278, 384, 423
StyD4I CCNGG 1 cut(s) 348
StyI CCWWGG 1 cut(s) 14
TaaI ACNGT 2 cut(s) 197, 503
TaiI ACGT 1 cut(s) 380
TaqI TCGA 2 cut(s) 35, 57
TasI AATT 5 cut(s) 140, 178, 278, 384, 423
TfiI GAWTC 2 cut(s) 59, 160
Tru1I TTAA 2 cut(s) 138, 381
Tru9I TTAA 2 cut(s) 138, 381
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 3 cut(s) 379, 483, 495
TspRI CASTG 1 cut(s) 517
Van91I CCANNNNNTGG 1 cut(s) 315
XapI RAATTY 3 cut(s) 140, 278, 384
XceI RCATGY 2 cut(s) 338, 444
XmnI GAANNNNTTC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.