Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006274

Physical Location & Seq

Genomic Coordinates Forward (+)

1463108 .. 1464173

Gene Structure 1066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G05087.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCGATGGAGATCTCGGTAGATCTGATAAACCAACTCAAGGTCTCGCTTCGAAAGGAGGCCAAGCTCACCTCCGTCGACGATTGCTCGGACTCATCCTTCCCCAGCCTTCCCACATCCGAGGAGGCAATCGCAGAACTTGATGCTTCAGCTCCGTACCTTCGTTGCCGAAACTGCAAAGGAAAACTTTTACGAGGAATCGAGTCTCTGATCTGTGTCTTCTGTGGAAATCAGCAACGCACGAGTGATAATCCTCCTGATCCCATCAAATTTACTTCCACTTCTGCTTACAAATGGTTTCTCACCTCTCTTAATCTCGATGGATCGGAGATGGTAGAGCCACTAAAGGAAACGGATGGGTCAAGCAGAGGAGCTACTAAGGCACCGCCTTCAAAAGGAATTGCTTTGTCTAAGTTTCTTGATTTGGAAATACAATGGTCTGCATTAGAGGAGAAGTCTGATGATGGACAATCAGTACAGAAGAAAAACCCTCTGAATCTAGGCGGGATTAATCTTGATGATTATTTCGTTGAGCGGAGAGGAGATCTTTCCAAAGTGGAGCAGGCAGAGAGTAAACCTGTGGAGGATGATGATTTTAAGGATCCACGTAGTCTTAGCTTATTCGATAGTGTAAAGAGTCAGGGAGTTGTTGGATCGCAACAGCATGATAATGTTGGTTTGTTTGATAAAAAAGATGCACCTAAGAGTGTTGTTTCTTCTGGGGAACATGAGAATCTTAGTTTGTTTGCTGGACGAGATGCGCAGGAAAGTGTTTCTTTCGCAGCGCAGGGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

265

Amino Acids

28.9

Weight (kDa)

4.77

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05087 AT1G05087 AT1G05090 AT4G20720 AT4G20720
fragaria_vesca	FvH4_6g42760 FvH4_6g42760
malus_domestica	MD09G1071600.v1.1 MD17G1100100.v1.1 MD17G1100200.v1.1 MD17G1100500.v1.1
prunus_persica	Prupe.3G214000_v2.0.a1 Prupe.3G214000_v2.0.a1
pyrus_communis	pycom09g03450 pycom17g09500 pycom17g09530
rosa_chinensis	RchiOBHm_Chr2g0158651
rosa_laevigata	RLG00000021103
rosa_multiflora	Rmu_co8052378.1_g000001 Rmu_sc0004188.1_g000013
rosa_roxburghii	Rroxscaffold_2G00091140
rosa_rugosa	Rorug02G0471100
rosa_samantha	Rh2AG536900 Rh2BG550100 Rh2CG520600 Rh2DG559700
rosa_wichuraiana	Rw2G044450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	762
AccB1I	GGYRCC	1 cut(s)	382
AccBSI	CCGCTC	1 cut(s)	535
AccI	GTMKAC	1 cut(s)	78
AciI	CCGC	3 cut(s)	386, 504, 535
AclWI	GGATC	5 cut(s)	254, 331, 596, 609, 661
AcsI	RAATTY	1 cut(s)	269
AcuI	CTGAAG	1 cut(s)	132
AfaI	GTAC	2 cut(s)	158, 477
AfiI	CCNNNNNNNGG	2 cut(s)	40, 395
AgsI	TTSAA	1 cut(s)	393
AluBI	AGCT	4 cut(s)	67, 152, 374, 618
AluI	AGCT	4 cut(s)	67, 152, 374, 618
Alw26I	GTCTC	2 cut(s)	49, 210
AlwI	GGATC	5 cut(s)	254, 331, 596, 609, 661
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	1 cut(s)	782
ApoI	RAATTY	1 cut(s)	269
AseI	ATTAAT	1 cut(s)	510
AspLEI	GCGC	2 cut(s)	763, 787
AsuHPI	GGTGA	2 cut(s)	61, 295
AsuII	TTCGAA	1 cut(s)	52
BamHI	GGATCC	1 cut(s)	601
BanI	GGYRCC	1 cut(s)	382
BauI	CACGAG	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	794
BccI	CCATC	5 cut(s)	272, 314, 325, 350, 458
BcoDI	GTCTC	2 cut(s)	49, 210
BfaI	CTAG	2 cut(s)	500, 796
BglII	AGATCT	3 cut(s)	12, 22, 544
BisI	GCNGC	1 cut(s)	783
BlsI	GCNGC	1 cut(s)	784
BmiI	GGNNCC	2 cut(s)	384, 603
BmsI	GCATC	3 cut(s)	133, 685, 748
BpiI	GAAGAC	1 cut(s)	211
Bpu14I	TTCGAA	1 cut(s)	52
BpuEI	CTTGAG	1 cut(s)	23
BsaAI	YACGTR	1 cut(s)	608
BsaBI	GATNNNNATC	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 395
Bse8I	GATNNNNATC	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	4 cut(s)	95, 116, 361, 592
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	2 cut(s)	40, 395
BseRI	GAGGAG	4 cut(s)	137, 384, 464, 555
BseXI	GCAGC	1 cut(s)	794
BseYI	CCCAGC	1 cut(s)	104
BshFI	GGCC	1 cut(s)	62
BshNI	GGYRCC	1 cut(s)	382
BslI	CCNNNNNNNGG	2 cut(s)	40, 395
BsmAI	GTCTC	2 cut(s)	49, 210
BsnI	GGCC	1 cut(s)	62
Bso31I	GGTCTC	1 cut(s)	49
Bsp119I	TTCGAA	1 cut(s)	52
Bsp143I	GATC	8 cut(s)	12, 22, 210, 259, 323, 544, 601, 653
BspACI	CCGC	3 cut(s)	386, 504, 535
BspANI	GGCC	1 cut(s)	62
BspLI	GGNNCC	2 cut(s)	384, 603
BspPI	GGATC	5 cut(s)	254, 331, 596, 609, 661
BspT104I	TTCGAA	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	382
BspTNI	GGTCTC	1 cut(s)	49
BsrBI	CCGCTC	1 cut(s)	535
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	8 cut(s)	12, 22, 210, 259, 323, 544, 601, 653
BssSI	CACGAG	1 cut(s)	241
Bst2BI	CACGAG	1 cut(s)	241
BstBAI	YACGTR	1 cut(s)	608
BstBI	TTCGAA	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	564
BstDEI	CTNAG	5 cut(s)	378, 411, 614, 702, 737
BstENI	CCTNNNNNAGG	1 cut(s)	393
BstF5I	GGATG	4 cut(s)	95, 116, 361, 592
BstHHI	GCGC	2 cut(s)	763, 787
BstKTI	GATC	8 cut(s)	15, 25, 213, 262, 326, 547, 604, 656
BstMAI	GTCTC	2 cut(s)	49, 210
BstMBI	GATC	8 cut(s)	12, 22, 210, 259, 323, 544, 601, 653
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 380
BstV1I	GCAGC	1 cut(s)	794
BstV2I	GAAGAC	1 cut(s)	211
BstX2I	RGATCY	4 cut(s)	12, 22, 544, 601
BstYI	RGATCY	4 cut(s)	12, 22, 544, 601
BsuRI	GGCC	1 cut(s)	62
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	4 cut(s)	95, 116, 361, 592
Cac8I	GCNNGC	1 cut(s)	564
CfoI	GCGC	2 cut(s)	763, 787
Csp6I	GTAC	2 cut(s)	157, 476
CviAII	CATG	2 cut(s)	665, 728
CviJI	RGCY	7 cut(s)	62, 67, 108, 152, 340, 374, 618
CviKI_1	RGCY	7 cut(s)	62, 67, 108, 152, 340, 374, 618
CviQI	GTAC	2 cut(s)	157, 476
DdeI	CTNAG	5 cut(s)	378, 411, 614, 702, 737
DpnI	GATC	8 cut(s)	14, 24, 212, 261, 325, 546, 603, 655
DpnII	GATC	8 cut(s)	12, 22, 210, 259, 323, 544, 601, 653
Eco31I	GGTCTC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	132
EcoNI	CCTNNNNNAGG	1 cut(s)	393
FaeI	CATG	2 cut(s)	668, 731
FaiI	YATR	2 cut(s)	666, 729
FalI	AAGNNNNNCTT	4 cut(s)	171, 203, 760, 792
FatI	CATG	2 cut(s)	664, 727
FauI	CCCGC	1 cut(s)	497
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	1 cut(s)	783
FokI	GGATG	4 cut(s)	82, 103, 368, 599
Fsp4HI	GCNGC	1 cut(s)	783
FspBI	CTAG	2 cut(s)	500, 796
FspI	TGCGCA	1 cut(s)	762
GlaI	GCGC	2 cut(s)	762, 786
GluI	GCNGC	1 cut(s)	783
GsaI	CCCAGC	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	62
HhaI	GCGC	2 cut(s)	763, 787
Hin1II	CATG	2 cut(s)	668, 731
Hin6I	GCGC	2 cut(s)	761, 785
HinP1I	GCGC	2 cut(s)	761, 785
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	6 cut(s)	92, 198, 203, 496, 637, 733
HphI	GGTGA	2 cut(s)	61, 295
Hpy166II	GTNNAC	2 cut(s)	79, 575
Hpy188I	TCNGA	7 cut(s)	27, 91, 121, 210, 328, 460, 495
Hpy188III	TCNNGA	4 cut(s)	257, 317, 419, 515
Hpy8I	GTNNAC	2 cut(s)	79, 575
Hpy99I	CGWCG	2 cut(s)	80, 83
HpyAV	CCTTC	4 cut(s)	109, 119, 170, 399
HpyCH4IV	ACGT	1 cut(s)	607
HpyCH4V	TGCA	3 cut(s)	177, 443, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 380
HpyF3I	CTNAG	5 cut(s)	378, 411, 614, 702, 737
HpySE526I	ACGT	1 cut(s)	607
Hsp92II	CATG	2 cut(s)	668, 731
HspAI	GCGC	2 cut(s)	761, 785
Kzo9I	GATC	8 cut(s)	12, 22, 210, 259, 323, 544, 601, 653
LmnI	GCTCC	3 cut(s)	157, 371, 559
LpnPI	CCDG	9 cut(s)	118, 270, 548, 591, 626, 705, 735, 749, 773
Lsp1109I	GCAGC	1 cut(s)	794
LweI	GCATC	3 cut(s)	133, 685, 748
MaeI	CTAG	2 cut(s)	500, 796
MaeII	ACGT	1 cut(s)	607
MalI	GATC	8 cut(s)	14, 24, 212, 261, 325, 546, 603, 655
MbiI	CCGCTC	1 cut(s)	535
MboI	GATC	8 cut(s)	12, 22, 210, 259, 323, 544, 601, 653
MboII	GAAGA	3 cut(s)	211, 493, 708
MflI	RGATCY	4 cut(s)	12, 22, 544, 601
MluCI	AATT	2 cut(s)	269, 399
MlyI	GAGTC	3 cut(s)	86, 212, 646
MmeI	TCCRAC	1 cut(s)	631
MseI	TTAA	3 cut(s)	312, 510, 597
MslI	CAYNNNNRTG	1 cut(s)	669
MwoI	GCNNNNNNNGC	2 cut(s)	174, 380
NdeII	GATC	8 cut(s)	12, 22, 210, 259, 323, 544, 601, 653
NlaIII	CATG	2 cut(s)	668, 731
NlaIV	GGNNCC	2 cut(s)	384, 603
NsbI	TGCGCA	1 cut(s)	762
NspV	TTCGAA	1 cut(s)	52
PfeI	GAWTC	3 cut(s)	198, 496, 733
PkrI	GCNGC	1 cut(s)	784
PleI	GAGTC	3 cut(s)	86, 211, 645
PpsI	GAGTC	3 cut(s)	86, 211, 645
Ppu21I	YACGTR	1 cut(s)	608
PshBI	ATTAAT	1 cut(s)	510
PspFI	CCCAGC	1 cut(s)	104
PspN4I	GGNNCC	2 cut(s)	384, 603
PsuI	RGATCY	4 cut(s)	12, 22, 544, 601
RsaI	GTAC	2 cut(s)	158, 477
RsaNI	GTAC	2 cut(s)	157, 476
RseI	CAYNNNNRTG	1 cut(s)	669
SalI	GTCGAC	1 cut(s)	77
SaqAI	TTAA	3 cut(s)	312, 510, 597
SatI	GCNGC	1 cut(s)	783
Sau3AI	GATC	8 cut(s)	12, 22, 210, 259, 323, 544, 601, 653
SchI	GAGTC	3 cut(s)	86, 212, 646
SfaNI	GCATC	3 cut(s)	133, 685, 748
SfuI	TTCGAA	1 cut(s)	52
SgrDI	CGTCGACG	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	669
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	2 cut(s)	269, 399
SsiI	CCGC	3 cut(s)	386, 504, 535
SspMI	CTAG	2 cut(s)	500, 796
TaiI	ACGT	1 cut(s)	610
TaqI	TCGA	5 cut(s)	52, 78, 201, 318, 624
TasI	AATT	2 cut(s)	269, 399
TatI	WGTACW	1 cut(s)	475
TfiI	GAWTC	3 cut(s)	198, 496, 733
Tru1I	TTAA	3 cut(s)	312, 510, 597
Tru9I	TTAA	3 cut(s)	312, 510, 597
TseI	GCWGC	1 cut(s)	782
TspGWI	ACGGA	3 cut(s)	64, 144, 368
VspI	ATTAAT	1 cut(s)	510
XagI	CCTNNNNNAGG	1 cut(s)	393
XapI	RAATTY	1 cut(s)	269
XmiI	GTMKAC	1 cut(s)	78
XspI	CTAG	2 cut(s)	500, 796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.