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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G05087 AT1G05087 AT1G05090 AT4G20720 AT4G20720 |
| fragaria_vesca | FvH4_6g42760 FvH4_6g42760 |
| malus_domestica | MD09G1071600.v1.1 MD17G1100100.v1.1 MD17G1100200.v1.1 MD17G1100500.v1.1 |
| prunus_persica | Prupe.3G214000_v2.0.a1 Prupe.3G214000_v2.0.a1 |
| pyrus_communis | pycom09g03450 pycom17g09500 pycom17g09530 |
| rosa_chinensis | RchiOBHm_Chr2g0158651 |
| rosa_laevigata | RLG00000021103 |
| rosa_multiflora | Rmu_co8052378.1_g000001 Rmu_sc0004188.1_g000013 |
| rosa_roxburghii | Rroxscaffold_2G00091140 |
| rosa_rugosa | Rorug02G0471100 |
| rosa_samantha | Rh2AG536900 Rh2BG550100 Rh2CG520600 Rh2DG559700 |
| rosa_wichuraiana | Rw2G044450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1421 |
| Acc16I | TGCGCA | 2 cut(s) | 762, 1671 |
| AccB1I | GGYRCC | 1 cut(s) | 382 |
| AccBSI | CCGCTC | 1 cut(s) | 535 |
| AccI | GTMKAC | 1 cut(s) | 78 |
| AccIII | TCCGGA | 2 cut(s) | 1295, 1864 |
| AciI | CCGC | 5 cut(s) | 386, 504, 535, 1956, 2105 |
| AclWI | GGATC | 7 cut(s) | 254, 331, 596, 609, 661, 1496, 2018 |
| AcsI | RAATTY | 3 cut(s) | 269, 1096, 1465 |
| AcuI | CTGAAG | 1 cut(s) | 132 |
| AfaI | GTAC | 1 cut(s) | 477 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 40, 395 |
| AflII | CTTAAG | 1 cut(s) | 1139 |
| AgsI | TTSAA | 6 cut(s) | 393, 986, 1049, 1196, 1335, 1350 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1141, 1448 |
| AhlI | ACTAGT | 2 cut(s) | 887, 947 |
| AluBI | AGCT | 7 cut(s) | 67, 152, 374, 618, 1355, 1590, 2113 |
| AluI | AGCT | 7 cut(s) | 67, 152, 374, 618, 1355, 1590, 2113 |
| Alw21I | GWGCWC | 1 cut(s) | 1120 |
| Alw26I | GTCTC | 4 cut(s) | 49, 210, 1896, 2144 |
| Alw44I | GTGCAC | 1 cut(s) | 1116 |
| AlwI | GGATC | 7 cut(s) | 254, 331, 596, 609, 661, 1496, 2018 |
| Ama87I | CYCGRG | 1 cut(s) | 2147 |
| Aor13HI | TCCGGA | 2 cut(s) | 1295, 1864 |
| AoxI | GGCC | 2 cut(s) | 60, 1401 |
| ApaLI | GTGCAC | 1 cut(s) | 1116 |
| ApeKI | GCWGC | 4 cut(s) | 782, 1166, 1268, 1822 |
| ApoI | RAATTY | 3 cut(s) | 269, 1096, 1465 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1895, 1927 |
| AseI | ATTAAT | 1 cut(s) | 510 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 889, 949, 1012, 1075 |
| AspLEI | GCGC | 3 cut(s) | 763, 787, 1672 |
| AspS9I | GGNCC | 1 cut(s) | 1402 |
| AsuHPI | GGTGA | 5 cut(s) | 61, 295, 1247, 1409, 1865 |
| AsuII | TTCGAA | 1 cut(s) | 52 |
| AvaI | CYCGRG | 1 cut(s) | 2147 |
| BaeGI | GKGCMC | 1 cut(s) | 1120 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1716, 1749 |
| BamHI | GGATCC | 1 cut(s) | 601 |
| BanI | GGYRCC | 1 cut(s) | 382 |
| BauI | CACGAG | 1 cut(s) | 241 |
| BbsI | GAAGAC | 2 cut(s) | 211, 1541 |
| Bbv12I | GWGCWC | 1 cut(s) | 1120 |
| BbvI | GCAGC | 4 cut(s) | 794, 1153, 1255, 1834 |
| BccI | CCATC | 7 cut(s) | 272, 314, 325, 350, 458, 1226, 2024 |
| BceAI | ACGGC | 1 cut(s) | 1406 |
| BclI | TGATCA | 1 cut(s) | 1204 |
| BcoDI | GTCTC | 4 cut(s) | 49, 210, 1896, 2144 |
| BcuI | ACTAGT | 2 cut(s) | 887, 947 |
| BfaI | CTAG | 3 cut(s) | 500, 888, 948 |
| BfmI | CTRYAG | 3 cut(s) | 1542, 1808, 1820 |
| BfrI | CTTAAG | 1 cut(s) | 1139 |
| BglII | AGATCT | 3 cut(s) | 12, 22, 544 |
| BisI | GCNGC | 5 cut(s) | 783, 1167, 1269, 1823, 1957 |
| BlsI | GCNGC | 5 cut(s) | 784, 1168, 1270, 1824, 1958 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1141, 1448 |
| BmeT110I | CYCGRG | 1 cut(s) | 2147 |
| BmgT120I | GGNCC | 1 cut(s) | 1402 |
| BmiI | GGNNCC | 4 cut(s) | 384, 603, 1294, 1999 |
| BpiI | GAAGAC | 2 cut(s) | 211, 1541 |
| BpmI | CTGGAG | 1 cut(s) | 1239 |
| Bpu14I | TTCGAA | 1 cut(s) | 52 |
| BpuEI | CTTGAG | 1 cut(s) | 23 |
| BsaAI | YACGTR | 1 cut(s) | 608 |
| BsaBI | GATNNNNATC | 2 cut(s) | 11, 1209 |
| BsaI | GGTCTC | 3 cut(s) | 49, 1896, 2144 |
| BsaJI | CCNNGG | 3 cut(s) | 120, 1473, 1632 |
| BsaWI | WCCGGW | 2 cut(s) | 1295, 1864 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2102, 2132 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 40, 395 |
| Bse118I | RCCGGY | 1 cut(s) | 1321 |
| Bse1I | ACTGG | 3 cut(s) | 1256, 1399, 1577 |
| Bse3DI | GCAATG | 1 cut(s) | 1465 |
| Bse8I | GATNNNNATC | 2 cut(s) | 11, 1209 |
| BseAI | TCCGGA | 2 cut(s) | 1295, 1864 |
| BseDI | CCNNGG | 3 cut(s) | 120, 1473, 1632 |
| BseJI | GATNNNNATC | 2 cut(s) | 11, 1209 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 40, 395 |
| BseMI | GCAATG | 1 cut(s) | 1465 |
| BseMII | CTCAG | 7 cut(s) | 893, 953, 1016, 1079, 1232, 1431, 1983 |
| BseNI | ACTGG | 3 cut(s) | 1256, 1399, 1577 |
| BseRI | GAGGAG | 6 cut(s) | 137, 384, 464, 555, 824, 2123 |
| BseSI | GKGCMC | 1 cut(s) | 1120 |
| BseXI | GCAGC | 4 cut(s) | 794, 1153, 1255, 1834 |
| BseYI | CCCAGC | 1 cut(s) | 104 |
| BshFI | GGCC | 2 cut(s) | 62, 1403 |
| BshNI | GGYRCC | 1 cut(s) | 382 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1120 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2147 |
| BsiSI | CCGG | 3 cut(s) | 1296, 1322, 1865 |
| BslFI | GGGAC | 3 cut(s) | 1196, 1455, 1789 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 40, 395 |
| BsmAI | GTCTC | 4 cut(s) | 49, 210, 1896, 2144 |
| BsmFI | GGGAC | 3 cut(s) | 1196, 1455, 1789 |
| BsnI | GGCC | 2 cut(s) | 62, 1403 |
| Bso31I | GGTCTC | 3 cut(s) | 49, 1896, 2144 |
| BsoBI | CYCGRG | 1 cut(s) | 2147 |
| Bsp119I | TTCGAA | 1 cut(s) | 52 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1120 |
| Bsp13I | TCCGGA | 2 cut(s) | 1295, 1864 |
| Bsp19I | CCATGG | 2 cut(s) | 1473, 1632 |
| BspACI | CCGC | 5 cut(s) | 386, 504, 535, 1956, 2105 |
| BspANI | GGCC | 2 cut(s) | 62, 1403 |
| BspCNI | CTCAG | 7 cut(s) | 892, 952, 1015, 1078, 1231, 1430, 1982 |
| BspEI | TCCGGA | 2 cut(s) | 1295, 1864 |
| BspLI | GGNNCC | 4 cut(s) | 384, 603, 1294, 1999 |
| BspMAI | CTGCAG | 2 cut(s) | 1812, 1824 |
| BspPI | GGATC | 7 cut(s) | 254, 331, 596, 609, 661, 1496, 2018 |
| BspT104I | TTCGAA | 1 cut(s) | 52 |
| BspT107I | GGYRCC | 1 cut(s) | 382 |
| BspTI | CTTAAG | 1 cut(s) | 1139 |
| BspTNI | GGTCTC | 3 cut(s) | 49, 1896, 2144 |
| BsrBI | CCGCTC | 1 cut(s) | 535 |
| BsrDI | GCAATG | 1 cut(s) | 1465 |
| BsrFI | RCCGGY | 1 cut(s) | 1321 |
| BsrI | ACTGG | 3 cut(s) | 1256, 1399, 1577 |
| BssAI | RCCGGY | 1 cut(s) | 1321 |
| BssECI | CCNNGG | 3 cut(s) | 120, 1473, 1632 |
| BssSI | CACGAG | 1 cut(s) | 241 |
| BssT1I | CCWWGG | 2 cut(s) | 1473, 1632 |
| Bst2BI | CACGAG | 1 cut(s) | 241 |
| Bst4CI | ACNGT | 3 cut(s) | 1685, 2050, 2080 |
| BstAFI | CTTAAG | 1 cut(s) | 1139 |
| BstBAI | YACGTR | 1 cut(s) | 608 |
| BstBI | TTCGAA | 1 cut(s) | 52 |
| BstC8I | GCNNGC | 3 cut(s) | 564, 1357, 1588 |
| BstDSI | CCRYGG | 2 cut(s) | 1473, 1632 |
| BstEII | GGTNACC | 1 cut(s) | 1235 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 393 |
| BstHHI | GCGC | 3 cut(s) | 763, 787, 1672 |
| BstMAI | GTCTC | 4 cut(s) | 49, 210, 1896, 2144 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 174, 380, 1322, 1592 |
| BstNSI | RCATGY | 1 cut(s) | 1670 |
| BstPI | GGTNACC | 1 cut(s) | 1235 |
| BstSFI | CTRYAG | 3 cut(s) | 1542, 1808, 1820 |
| BstSLI | GKGCMC | 1 cut(s) | 1120 |
| BstV1I | GCAGC | 4 cut(s) | 794, 1153, 1255, 1834 |
| BstV2I | GAAGAC | 2 cut(s) | 211, 1541 |
| BstX2I | RGATCY | 4 cut(s) | 12, 22, 544, 601 |
| BstYI | RGATCY | 4 cut(s) | 12, 22, 544, 601 |
| BsuRI | GGCC | 2 cut(s) | 62, 1403 |
| BtgI | CCRYGG | 2 cut(s) | 1473, 1632 |
| BtgZI | GCGATG | 1 cut(s) | 20 |
| BtsIMutI | CAGTG | 2 cut(s) | 1392, 2169 |
| Cac8I | GCNNGC | 3 cut(s) | 564, 1357, 1588 |
| CfoI | GCGC | 3 cut(s) | 763, 787, 1672 |
| Cfr10I | RCCGGY | 1 cut(s) | 1321 |
| Cfr13I | GGNCC | 1 cut(s) | 1402 |
| Csp6I | GTAC | 1 cut(s) | 476 |
| CviAII | CATG | 8 cut(s) | 665, 728, 1427, 1474, 1633, 1667, 1838, 2129 |
| CviQI | GTAC | 1 cut(s) | 476 |
| DraI | TTTAAA | 1 cut(s) | 835 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1421 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1141, 1448 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1421 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1141, 1448 |
| Eco130I | CCWWGG | 2 cut(s) | 1473, 1632 |
| Eco31I | GGTCTC | 3 cut(s) | 49, 1896, 2144 |
| Eco57I | CTGAAG | 1 cut(s) | 132 |
| Eco88I | CYCGRG | 1 cut(s) | 2147 |
| Eco91I | GGTNACC | 1 cut(s) | 1235 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 393 |
| EcoO65I | GGTNACC | 1 cut(s) | 1235 |
| EcoT14I | CCWWGG | 2 cut(s) | 1473, 1632 |
| EcoT22I | ATGCAT | 1 cut(s) | 2130 |
| ErhI | CCWWGG | 2 cut(s) | 1473, 1632 |
| FaeI | CATG | 8 cut(s) | 668, 731, 1430, 1477, 1636, 1670, 1841, 2132 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 171, 203, 760, 792 |
| FaqI | GGGAC | 3 cut(s) | 1196, 1455, 1789 |
| FatI | CATG | 8 cut(s) | 664, 727, 1426, 1473, 1632, 1666, 1837, 2128 |
| FauI | CCCGC | 1 cut(s) | 497 |
| FauNDI | CATATG | 1 cut(s) | 1275 |
| FbaI | TGATCA | 1 cut(s) | 1204 |
| FblI | GTMKAC | 1 cut(s) | 78 |
| Fnu4HI | GCNGC | 5 cut(s) | 783, 1167, 1269, 1823, 1957 |
| Fsp4HI | GCNGC | 5 cut(s) | 783, 1167, 1269, 1823, 1957 |
| FspBI | CTAG | 3 cut(s) | 500, 888, 948 |
| FspI | TGCGCA | 2 cut(s) | 762, 1671 |
| GlaI | GCGC | 3 cut(s) | 762, 786, 1671 |
| GluI | GCNGC | 5 cut(s) | 783, 1167, 1269, 1823, 1957 |
| GsaI | CCCAGC | 1 cut(s) | 108 |
| GsuI | CTGGAG | 1 cut(s) | 1239 |
| HaeIII | GGCC | 2 cut(s) | 62, 1403 |
| HapII | CCGG | 3 cut(s) | 1296, 1322, 1865 |
| HhaI | GCGC | 3 cut(s) | 763, 787, 1672 |
| Hin1II | CATG | 8 cut(s) | 668, 731, 1430, 1477, 1636, 1670, 1841, 2132 |
| Hin6I | GCGC | 3 cut(s) | 761, 785, 1670 |
| HinP1I | GCGC | 3 cut(s) | 761, 785, 1670 |
| HincII | GTYRAC | 1 cut(s) | 79 |
| HindII | GTYRAC | 1 cut(s) | 79 |
| HpaII | CCGG | 3 cut(s) | 1296, 1322, 1865 |
| HphI | GGTGA | 5 cut(s) | 61, 295, 1247, 1409, 1865 |
| Hpy166II | GTNNAC | 3 cut(s) | 79, 575, 1118 |
| Hpy8I | GTNNAC | 3 cut(s) | 79, 575, 1118 |
| Hpy99I | CGWCG | 2 cut(s) | 80, 83 |
| HpyAV | CCTTC | 7 cut(s) | 109, 119, 170, 399, 980, 1043, 2001 |
| HpyCH4III | ACNGT | 3 cut(s) | 1685, 2050, 2080 |
| HpyCH4IV | ACGT | 2 cut(s) | 607, 1927 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 174, 380, 1322, 1592 |
| HpySE526I | ACGT | 2 cut(s) | 607, 1927 |
| Hsp92II | CATG | 8 cut(s) | 668, 731, 1430, 1477, 1636, 1670, 1841, 2132 |
| HspAI | GCGC | 3 cut(s) | 761, 785, 1670 |
| Kpn2I | TCCGGA | 2 cut(s) | 1295, 1864 |
| Ksp22I | TGATCA | 1 cut(s) | 1204 |
| LmnI | GCTCC | 4 cut(s) | 157, 371, 559, 2110 |
| Lsp1109I | GCAGC | 4 cut(s) | 794, 1153, 1255, 1834 |
| MaeI | CTAG | 3 cut(s) | 500, 888, 948 |
| MaeII | ACGT | 2 cut(s) | 607, 1927 |
| MaeIII | GTNAC | 3 cut(s) | 1235, 1390, 2118 |
| MbiI | CCGCTC | 1 cut(s) | 535 |
| MflI | RGATCY | 4 cut(s) | 12, 22, 544, 601 |
| MhlI | GDGCHC | 1 cut(s) | 1120 |
| MluCI | AATT | 5 cut(s) | 269, 399, 1096, 1465, 1646 |
| MlyI | GAGTC | 6 cut(s) | 86, 212, 646, 1178, 1409, 1600 |
| MmeI | TCCRAC | 1 cut(s) | 631 |
| Mph1103I | ATGCAT | 1 cut(s) | 2130 |
| MroI | TCCGGA | 2 cut(s) | 1295, 1864 |
| MroXI | GAANNNNTTC | 4 cut(s) | 889, 949, 1012, 1075 |
| MseI | TTAA | 7 cut(s) | 312, 510, 597, 834, 1140, 1551, 1689 |
| MslI | CAYNNNNRTG | 1 cut(s) | 669 |
| MspCI | CTTAAG | 1 cut(s) | 1139 |
| MspI | CCGG | 3 cut(s) | 1296, 1322, 1865 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 174, 380, 1322, 1592 |
| NcoI | CCATGG | 2 cut(s) | 1473, 1632 |
| NdeI | CATATG | 1 cut(s) | 1275 |
| NlaIII | CATG | 8 cut(s) | 668, 731, 1430, 1477, 1636, 1670, 1841, 2132 |
| NlaIV | GGNNCC | 4 cut(s) | 384, 603, 1294, 1999 |
| NmeAIII | GCCGAG | 1 cut(s) | 1571 |
| NmuCI | GTSAC | 3 cut(s) | 1235, 1390, 2118 |
| NsbI | TGCGCA | 2 cut(s) | 762, 1671 |
| NsiI | ATGCAT | 1 cut(s) | 2130 |
| NspI | RCATGY | 1 cut(s) | 1670 |
| NspV | TTCGAA | 1 cut(s) | 52 |
| PaeR7I | CTCGAG | 1 cut(s) | 2147 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1419 |
| PdmI | GAANNNNTTC | 4 cut(s) | 889, 949, 1012, 1075 |
| PfeI | GAWTC | 6 cut(s) | 198, 496, 733, 1280, 1328, 1843 |
| PkrI | GCNGC | 5 cut(s) | 784, 1168, 1270, 1824, 1958 |
| PleI | GAGTC | 6 cut(s) | 86, 211, 645, 1178, 1409, 1600 |
| PpsI | GAGTC | 6 cut(s) | 86, 211, 645, 1178, 1409, 1600 |
| Ppu21I | YACGTR | 1 cut(s) | 608 |
| PshBI | ATTAAT | 1 cut(s) | 510 |
| PspEI | GGTNACC | 1 cut(s) | 1235 |
| PspFI | CCCAGC | 1 cut(s) | 104 |
| PspN4I | GGNNCC | 4 cut(s) | 384, 603, 1294, 1999 |
| PspPI | GGNCC | 1 cut(s) | 1402 |
| PstI | CTGCAG | 2 cut(s) | 1812, 1824 |
| PsuI | RGATCY | 4 cut(s) | 12, 22, 544, 601 |
| RsaI | GTAC | 1 cut(s) | 477 |
| RsaNI | GTAC | 1 cut(s) | 476 |
| RseI | CAYNNNNRTG | 1 cut(s) | 669 |
| SalI | GTCGAC | 1 cut(s) | 77 |
| SaqAI | TTAA | 7 cut(s) | 312, 510, 597, 834, 1140, 1551, 1689 |
| SatI | GCNGC | 5 cut(s) | 783, 1167, 1269, 1823, 1957 |
| Sau96I | GGNCC | 1 cut(s) | 1402 |
| SchI | GAGTC | 6 cut(s) | 86, 212, 646, 1178, 1409, 1600 |
| SduI | GDGCHC | 1 cut(s) | 1120 |
| SfcI | CTRYAG | 3 cut(s) | 1542, 1808, 1820 |
| Sfr274I | CTCGAG | 1 cut(s) | 2147 |
| SfuI | TTCGAA | 1 cut(s) | 52 |
| SgrDI | CGTCGACG | 1 cut(s) | 77 |
| SlaI | CTCGAG | 1 cut(s) | 2147 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 669 |
| SmlI | CTYRAG | 3 cut(s) | 38, 1139, 2147 |
| SmoI | CTYRAG | 3 cut(s) | 38, 1139, 2147 |
| SpeI | ACTAGT | 2 cut(s) | 887, 947 |
| Sse9I | AATT | 5 cut(s) | 269, 399, 1096, 1465, 1646 |
| SsiI | CCGC | 5 cut(s) | 386, 504, 535, 1956, 2105 |
| SspMI | CTAG | 3 cut(s) | 500, 888, 948 |
| StyI | CCWWGG | 2 cut(s) | 1473, 1632 |
| TaaI | ACNGT | 3 cut(s) | 1685, 2050, 2080 |
| TaiI | ACGT | 2 cut(s) | 610, 1930 |
| TaqI | TCGA | 6 cut(s) | 52, 78, 201, 318, 624, 2148 |
| TaqII | GACCGA | 1 cut(s) | 2032 |
| TasI | AATT | 5 cut(s) | 269, 399, 1096, 1465, 1646 |
| TatI | WGTACW | 1 cut(s) | 475 |
| TauI | GCSGC | 1 cut(s) | 1959 |
| TfiI | GAWTC | 6 cut(s) | 198, 496, 733, 1280, 1328, 1843 |
| Tru1I | TTAA | 7 cut(s) | 312, 510, 597, 834, 1140, 1551, 1689 |
| Tru9I | TTAA | 7 cut(s) | 312, 510, 597, 834, 1140, 1551, 1689 |
| TscAI | CASTG | 2 cut(s) | 1399, 2169 |
| TseFI | GTSAC | 3 cut(s) | 1235, 1390, 2118 |
| TseI | GCWGC | 4 cut(s) | 782, 1166, 1268, 1822 |
| Tsp45I | GTSAC | 3 cut(s) | 1235, 1390, 2118 |
| TspDTI | ATGAA | 7 cut(s) | 858, 921, 1107, 1458, 1530, 1826, 1886 |
| TspGWI | ACGGA | 2 cut(s) | 64, 368 |
| TspRI | CASTG | 2 cut(s) | 1399, 2169 |
| Vha464I | CTTAAG | 1 cut(s) | 1139 |
| VneI | GTGCAC | 1 cut(s) | 1116 |
| VspI | ATTAAT | 1 cut(s) | 510 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 393 |
| XapI | RAATTY | 3 cut(s) | 269, 1096, 1465 |
| XceI | RCATGY | 1 cut(s) | 1670 |
| XhoI | CTCGAG | 1 cut(s) | 2147 |
| XmiI | GTMKAC | 1 cut(s) | 78 |
| XmnI | GAANNNNTTC | 4 cut(s) | 889, 949, 1012, 1075 |
| XspI | CTAG | 3 cut(s) | 500, 888, 948 |
| Zsp2I | ATGCAT | 1 cut(s) | 2130 |