Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8052378.1

Orthogroup ID

OG0006274

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 562

Gene Structure 562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8052378.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

gggtttacttggatagaggagactttggtaaagtttggaactttggtggtttgcaggagatagtggacctaccaacaaaagcgaatgaatccagtagaggccagaatgcagcgaaggatgagttaaccgtgtctgagcttttaaatgtagaactaagatggacttctaagtcggagaaatccggggctgggctttcggatgagaaggctcccactcggcctaaaagttttctggatttggctggagtgaatctggacaacttcttttcggaaggagagaaagatgctgctttgaatgcatctgaagagccgtttgagccgagctctcagactgcaactacagagactagtgctttcaaacctagtgaaaatcttagtttgtttgcatcagaagagccgtttgagccgaacaaaccaattgccactacagagactagtgctttcaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.1

Weight (kDa)

4.48

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05087 AT1G05087 AT1G05090 AT4G20720 AT4G20720
fragaria_vesca	FvH4_6g42760 FvH4_6g42760
malus_domestica	MD09G1071600.v1.1 MD17G1100100.v1.1 MD17G1100200.v1.1 MD17G1100500.v1.1
prunus_persica	Prupe.3G214000_v2.0.a1 Prupe.3G214000_v2.0.a1
pyrus_communis	pycom09g03450 pycom17g09500 pycom17g09530
rosa_chinensis	RchiOBHm_Chr2g0158651
rosa_laevigata	RLG00000021103
rosa_multiflora	Rmu_co8052378.1_g000001 Rmu_sc0004188.1_g000013
rosa_roxburghii	Rroxscaffold_2G00091140
rosa_rugosa	Rorug02G0471100
rosa_samantha	Rh2AG536900 Rh2BG550100 Rh2CG520600 Rh2DG559700
rosa_wichuraiana	Rw2G044450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	3 cut(s)	294, 357, 444
AhlI	ACTAGT	2 cut(s)	346, 433
AluBI	AGCT	2 cut(s)	138, 323
AluI	AGCT	2 cut(s)	138, 323
Alw21I	GWGCWC	1 cut(s)	325
Alw26I	GTCTC	3 cut(s)	14, 337, 424
AoxI	GGCC	2 cut(s)	99, 217
ApeKI	GCWGC	2 cut(s)	109, 286
AspS9I	GGNCC	1 cut(s)	66
AsuC2I	CCSGG	1 cut(s)	183
AvaII	GGWCC	1 cut(s)	66
BanII	GRGCYC	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	121, 273
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	2 cut(s)	294, 381
BcnI	CCSGG	1 cut(s)	183
BcoDI	GTCTC	3 cut(s)	14, 337, 424
BcuI	ACTAGT	2 cut(s)	346, 433
BfaI	CTAG	3 cut(s)	347, 362, 434
BfmI	CTRYAG	2 cut(s)	338, 425
BisI	GCNGC	2 cut(s)	110, 287
BlsI	GCNGC	2 cut(s)	111, 288
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	1 cut(s)	209
BmrFI	CCNGG	1 cut(s)	183
BmsI	GCATC	3 cut(s)	273, 307, 394
BplI	GAGNNNNNCTC	2 cut(s)	307, 339
BpmI	CTGGAG	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	182
BseGI	GGATG	2 cut(s)	123, 204
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	2 cut(s)	125, 340
BseNI	ACTGG	1 cut(s)	92
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	121, 273
BseYI	CCCAGC	1 cut(s)	187
BshFI	GGCC	2 cut(s)	101, 219
BsiHKAI	GWGCWC	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	3 cut(s)	14, 337, 424
BsmI	GAATGC	2 cut(s)	111, 300
BsnI	GGCC	2 cut(s)	101, 219
Bsp1286I	GDGCHC	1 cut(s)	325
BspANI	GGCC	2 cut(s)	101, 219
BspCNI	CTCAG	2 cut(s)	126, 339
BspLI	GGNNCC	1 cut(s)	209
BspQI	GCTCTTC	2 cut(s)	299, 386
BsrI	ACTGG	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	129
Bst6I	CTCTTC	2 cut(s)	299, 386
BstDEI	CTNAG	5 cut(s)	134, 154, 167, 326, 373
BstF5I	GGATG	2 cut(s)	123, 204
BstMAI	GTCTC	3 cut(s)	14, 337, 424
BstMWI	GCNNNNNNNGC	3 cut(s)	295, 315, 402
BstSCI	CCNGG	1 cut(s)	181
BstSFI	CTRYAG	2 cut(s)	338, 425
BstV1I	GCAGC	2 cut(s)	121, 273
BsuRI	GGCC	2 cut(s)	101, 219
BtsCI	GGATG	2 cut(s)	123, 204
Cfr13I	GGNCC	1 cut(s)	66
DdeI	CTNAG	5 cut(s)	134, 154, 167, 326, 373
DraI	TTTAAA	1 cut(s)	143
DrdI	GACNNNNNNGTC	1 cut(s)	168
DseDI	GACNNNNNNGTC	1 cut(s)	168
Eam1104I	CTCTTC	2 cut(s)	299, 386
EarI	CTCTTC	2 cut(s)	299, 386
Ecl136II	GAGCTC	1 cut(s)	323
Eco24I	GRGCYC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	66
Eco53kI	GAGCTC	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	323
EcoICRI	GAGCTC	1 cut(s)	323
EcoT22I	ATGCAT	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	325
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
Fnu4HI	GCNGC	2 cut(s)	110, 287
FokI	GGATG	2 cut(s)	130, 211
FriOI	GRGCYC	1 cut(s)	325
Fsp4HI	GCNGC	2 cut(s)	110, 287
FspBI	CTAG	3 cut(s)	347, 362, 434
GluI	GCNGC	2 cut(s)	110, 287
GsaI	CCCAGC	1 cut(s)	191
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	2 cut(s)	101, 219
HapII	CCGG	1 cut(s)	182
HincII	GTYRAC	1 cut(s)	125
HindII	GTYRAC	1 cut(s)	125
HinfI	GANTC	2 cut(s)	88, 249
HpaI	GTTAAC	1 cut(s)	125
HpaII	CCGG	1 cut(s)	182
Hpy166II	GTNNAC	3 cut(s)	6, 66, 125
Hpy188I	TCNGA	7 cut(s)	135, 174, 198, 270, 303, 329, 390
Hpy188III	TCNNGA	2 cut(s)	232, 253
Hpy8I	GTNNAC	3 cut(s)	6, 66, 125
HpyAV	CCTTC	3 cut(s)	108, 198, 265
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4V	TGCA	5 cut(s)	54, 109, 298, 334, 385
HpyF10VI	GCNNNNNNNGC	3 cut(s)	295, 315, 402
HpyF3I	CTNAG	5 cut(s)	134, 154, 167, 326, 373
KspAI	GTTAAC	1 cut(s)	125
LguI	GCTCTTC	2 cut(s)	299, 386
LmnI	GCTCC	1 cut(s)	213
LpnPI	CCDG	8 cut(s)	40, 105, 115, 173, 195, 217, 227, 238
Lsp1109I	GCAGC	2 cut(s)	121, 273
LweI	GCATC	3 cut(s)	273, 307, 394
MaeI	CTAG	3 cut(s)	347, 362, 434
MboII	GAAGA	2 cut(s)	316, 403
MfeI	CAATTG	1 cut(s)	416
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	1 cut(s)	416
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	2 cut(s)	10, 91
Mph1103I	ATGCAT	1 cut(s)	300
MseI	TTAA	2 cut(s)	124, 142
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	183
MunI	CAATTG	1 cut(s)	416
Mva1269I	GAATGC	2 cut(s)	111, 300
MwoI	GCNNNNNNNGC	3 cut(s)	295, 315, 402
NciI	CCSGG	1 cut(s)	183
NlaIV	GGNNCC	1 cut(s)	209
NmeAIII	GCCGAG	2 cut(s)	195, 344
NsiI	ATGCAT	1 cut(s)	300
PciSI	GCTCTTC	2 cut(s)	299, 386
PctI	GAATGC	2 cut(s)	111, 300
PfeI	GAWTC	2 cut(s)	88, 249
PkrI	GCNGC	2 cut(s)	111, 288
Psp124BI	GAGCTC	1 cut(s)	325
PspFI	CCCAGC	1 cut(s)	187
PspN4I	GGNNCC	1 cut(s)	209
PspPI	GGNCC	1 cut(s)	66
SacI	GAGCTC	1 cut(s)	325
SapI	GCTCTTC	2 cut(s)	299, 386
SaqAI	TTAA	2 cut(s)	124, 142
SatI	GCNGC	2 cut(s)	110, 287
Sau96I	GGNCC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	4 cut(s)	71, 140, 325, 363
SfaNI	GCATC	3 cut(s)	273, 307, 394
SfcI	CTRYAG	2 cut(s)	338, 425
SinI	GGWCC	1 cut(s)	66
SpeI	ACTAGT	2 cut(s)	346, 433
Sse9I	AATT	1 cut(s)	416
SspMI	CTAG	3 cut(s)	347, 362, 434
SstI	GAGCTC	1 cut(s)	325
StyD4I	CCNGG	1 cut(s)	181
TaaI	ACNGT	1 cut(s)	129
TasI	AATT	1 cut(s)	416
TfiI	GAWTC	2 cut(s)	88, 249
Tru1I	TTAA	2 cut(s)	124, 142
Tru9I	TTAA	2 cut(s)	124, 142
TseI	GCWGC	2 cut(s)	109, 286
TspDTI	ATGAA	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	66
XspI	CTAG	3 cut(s)	347, 362, 434
Zsp2I	ATGCAT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.