Rorug02G0471100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006274
Physical Location & Seq
Forward (+)
60273882 .. 60277486
3605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0471100.1

Sequence Viewer

Length: 840 bp
ATGAGGAAGAAGTGTGAAAGCCAAGATTGGGAAGCTACTGTTCACTGTTGTCAGCAAGCTCTTATTGTTTGCACTTTGAGTTTTGACACCTCCACATTTGGTTGGGTTTATGTCACGTTTCTTTCTAACATTGGCAAGTTTTTATGCCCACAATGTCATTTGAAGAACTATGTATTGCTGGAGCTATCATTGTCAAGTTTCCTGTTTTGGGGAGCTCATCTCCGGGACCTTCCAATACCAAAGTTTTTGGCCATTTTGTCAGCATGGGATTTTCCAATAATGGGGGCAAACTACTTTGAAGCTACTGTCAAATGGTTGCCAAAGCTATTCAGGAACATGGCGAGGAAAGCGCCGATTCAATCCGTCACATCATTGTTTTCAGCAATAGTACTATCTTCAACTGTCGAGATCTCAGCCTCATTCTACAATAAAAACAAATGTGAGGGCAAGCGTGTTGCTGAGACCTTGATGTTTGACTATCATCGGCAACATGGGATAGGCCGTTTCCTTGCTGAGCTGACAAAGCAAGTGTTTTCTGATCTTTCTGCCAGTAAATATCAGATGGCTGAGCACAGAATATCAAAATATGGCAAGAAGCAAAGTGAGTGGGACCAAATGGCTAGTTGGATAGTGAACAATGAATTGTACAGTGAGAATGTTGTATGGTTGATACAGCTGCCACGGCTGTACAATATATACCAGGAAATGGGATATATTGTTCAAGATGCATCTAGTGGCCATGAAATTAGAAGGGAGTCCATAGGAGAAGGAGTTCATCCAGATTCAACTAGTGATCAAGAAATTGAGCACGCTCCAGTACTCACCAAGCCCTCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

279

Amino Acids

32.03

Weight (kDa)

7.1

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP_deaminase PF19326 167 - 240 3.5e-32 AMP deaminase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 706
AcoI YGGCCR 2 cut(s) 249, 736
AfaI GTAC 4 cut(s) 390, 647, 689, 819
AfiI CCNNNNNNNGG 4 cut(s) 28, 208, 281, 706
AgsI TTSAA 6 cut(s) 163, 299, 359, 399, 722, 786
AhlI ACTAGT 1 cut(s) 788
AjnI CCWGG 1 cut(s) 699
AloI GAACNNNNNNTCC 4 cut(s) 702, 734, 756, 788
AluBI AGCT 8 cut(s) 35, 59, 184, 215, 302, 325, 517, 676
AluI AGCT 8 cut(s) 35, 59, 184, 215, 302, 325, 517, 676
Alw21I GWGCWC 3 cut(s) 217, 573, 810
Alw26I GTCTC 1 cut(s) 455
AoxI GGCC 3 cut(s) 249, 499, 736
ApeKI GCWGC 1 cut(s) 676
Asp700I GAANNNNTTC 1 cut(s) 771
AspLEI GCGC 1 cut(s) 352
AspS9I GGNCC 2 cut(s) 226, 610
AsuC2I CCSGG 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 814
AvaII GGWCC 2 cut(s) 226, 610
BalI TGGCCA 2 cut(s) 251, 738
BanII GRGCYC 1 cut(s) 217
Bbv12I GWGCWC 3 cut(s) 217, 573, 810
BbvI GCAGC 1 cut(s) 663
BccI CCATC 1 cut(s) 556
BceAI ACGGC 2 cut(s) 486, 698
BciT130I CCWGG 1 cut(s) 701
BclI TGATCA 1 cut(s) 793
BcnI CCSGG 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 455
BcuI ACTAGT 1 cut(s) 788
BfaI CTAG 4 cut(s) 621, 732, 789, 834
BfoI RGCGCY 1 cut(s) 353
BglII AGATCT 1 cut(s) 408
BisI GCNGC 1 cut(s) 677
BlpI GCTNAGC 2 cut(s) 513, 567
BlsI GCNGC 1 cut(s) 678
BmcAI AGTACT 2 cut(s) 390, 819
Bme1390I CCNGG 2 cut(s) 224, 701
Bme18I GGWCC 2 cut(s) 226, 610
BmgT120I GGNCC 2 cut(s) 226, 610
BmiI GGNNCC 2 cut(s) 227, 611
BmrFI CCNGG 2 cut(s) 224, 701
BmsI GCATC 2 cut(s) 715, 737
BplI GAGNNNNNCTC 2 cut(s) 204, 236
BpmI CTGGAG 2 cut(s) 200, 798
Bpu1102I GCTNAGC 2 cut(s) 513, 567
BpuMI CCSGG 1 cut(s) 224
BsaI GGTCTC 1 cut(s) 455
BsaJI CCNNGG 1 cut(s) 680
BsaXI ACNNNNNCTCC 2 cut(s) 756, 786
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 208, 281, 706
Bse1I ACTGG 2 cut(s) 549, 815
BseBI CCWGG 1 cut(s) 701
BseDI CCNNGG 1 cut(s) 680
BseGI GGATG 1 cut(s) 775
BseLI CCNNNNNNNGG 4 cut(s) 28, 208, 281, 706
BseMII CTCAG 4 cut(s) 426, 450, 504, 558
BseNI ACTGG 2 cut(s) 549, 815
BseXI GCAGC 1 cut(s) 663
BshFI GGCC 3 cut(s) 251, 501, 738
BsiHKAI GWGCWC 3 cut(s) 217, 573, 810
BsiSI CCGG 1 cut(s) 223
BslFI GGGAC 2 cut(s) 239, 623
BslI CCNNNNNNNGG 4 cut(s) 28, 208, 281, 706
BsmAI GTCTC 1 cut(s) 455
BsmFI GGGAC 2 cut(s) 239, 623
BsnI GGCC 3 cut(s) 251, 501, 738
Bso31I GGTCTC 1 cut(s) 455
Bsp1286I GDGCHC 3 cut(s) 217, 573, 810
Bsp1407I TGTACA 2 cut(s) 645, 687
Bsp143I GATC 3 cut(s) 408, 538, 793
Bsp1720I GCTNAGC 2 cut(s) 513, 567
BspANI GGCC 3 cut(s) 251, 501, 738
BspCNI CTCAG 4 cut(s) 425, 451, 505, 559
BspLI GGNNCC 2 cut(s) 227, 611
BspTNI GGTCTC 1 cut(s) 455
BsrGI TGTACA 2 cut(s) 645, 687
BsrI ACTGG 2 cut(s) 549, 815
BssECI CCNNGG 1 cut(s) 680
BssMI GATC 3 cut(s) 408, 538, 793
Bst2UI CCWGG 1 cut(s) 701
Bst4CI ACNGT 5 cut(s) 40, 47, 307, 403, 650
BstAUI TGTACA 2 cut(s) 645, 687
BstC8I GCNNGC 3 cut(s) 57, 449, 810
BstDEI CTNAG 4 cut(s) 412, 459, 513, 567
BstDSI CCRYGG 1 cut(s) 680
BstF5I GGATG 1 cut(s) 775
BstH2I RGCGCY 1 cut(s) 353
BstHHI GCGC 1 cut(s) 352
BstKTI GATC 3 cut(s) 411, 541, 796
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 3 cut(s) 408, 538, 793
BstMWI GCNNNNNNNGC 3 cut(s) 347, 523, 682
BstNI CCWGG 1 cut(s) 701
BstSCI CCNGG 2 cut(s) 222, 699
BstV1I GCAGC 1 cut(s) 663
BstX2I RGATCY 1 cut(s) 408
BstYI RGATCY 1 cut(s) 408
BsuRI GGCC 3 cut(s) 251, 501, 738
BtgI CCRYGG 1 cut(s) 680
BtsCI GGATG 1 cut(s) 775
BtsIMutI CAGTG 2 cut(s) 43, 655
Cac8I GCNNGC 3 cut(s) 57, 449, 810
CfoI GCGC 1 cut(s) 352
Cfr13I GGNCC 2 cut(s) 226, 610
Csp6I GTAC 4 cut(s) 389, 646, 688, 818
CspCI CAANNNNNGTGG 2 cut(s) 587, 622
CviAII CATG 4 cut(s) 264, 337, 491, 740
CviQI GTAC 4 cut(s) 389, 646, 688, 818
DdeI CTNAG 4 cut(s) 412, 459, 513, 567
DpnI GATC 3 cut(s) 410, 540, 795
DpnII GATC 3 cut(s) 408, 538, 793
EaeI YGGCCR 2 cut(s) 249, 736
Ecl136II GAGCTC 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 217
Eco31I GGTCTC 1 cut(s) 455
Eco47I GGWCC 2 cut(s) 226, 610
Eco53kI GAGCTC 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 699
EcoT22I ATGCAT 1 cut(s) 730
EcoT38I GRGCYC 1 cut(s) 217
FaeI CATG 4 cut(s) 267, 340, 494, 743
FaqI GGGAC 2 cut(s) 239, 623
FatI CATG 4 cut(s) 263, 336, 490, 739
FbaI TGATCA 1 cut(s) 793
Fnu4HI GCNGC 1 cut(s) 677
FokI GGATG 1 cut(s) 762
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 1 cut(s) 677
FspBI CTAG 4 cut(s) 621, 732, 789, 834
GlaI GCGC 1 cut(s) 351
GluI GCNGC 1 cut(s) 677
GsuI CTGGAG 2 cut(s) 200, 798
HaeII RGCGCY 1 cut(s) 353
HaeIII GGCC 3 cut(s) 251, 501, 738
HapII CCGG 1 cut(s) 223
HhaI GCGC 1 cut(s) 352
Hin1II CATG 4 cut(s) 267, 340, 494, 743
Hin6I GCGC 1 cut(s) 350
HinP1I GCGC 1 cut(s) 350
HinfI GANTC 3 cut(s) 355, 755, 782
HpaII CCGG 1 cut(s) 223
HphI GGTGA 1 cut(s) 814
Hpy166II GTNNAC 2 cut(s) 43, 634
Hpy188I TCNGA 2 cut(s) 538, 561
Hpy188III TCNNGA 5 cut(s) 331, 406, 722, 779, 797
Hpy8I GTNNAC 2 cut(s) 43, 634
HpyAV CCTTC 3 cut(s) 239, 744, 761
HpyCH4III ACNGT 5 cut(s) 40, 47, 307, 403, 650
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 72, 728
HpyF10VI GCNNNNNNNGC 3 cut(s) 347, 523, 682
HpyF3I CTNAG 4 cut(s) 412, 459, 513, 567
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 4 cut(s) 267, 340, 494, 743
HspAI GCGC 1 cut(s) 350
Ksp22I TGATCA 1 cut(s) 793
Kzo9I GATC 3 cut(s) 408, 538, 793
LmnI GCTCC 3 cut(s) 181, 212, 817
LpnPI CCDG 9 cut(s) 164, 215, 236, 316, 562, 686, 713, 792, 828
Lsp1109I GCAGC 1 cut(s) 663
LweI GCATC 2 cut(s) 715, 737
MaeI CTAG 4 cut(s) 621, 732, 789, 834
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 2 cut(s) 112, 364
MalI GATC 3 cut(s) 410, 540, 795
MboI GATC 3 cut(s) 408, 538, 793
MboII GAAGA 3 cut(s) 19, 175, 387
MflI RGATCY 1 cut(s) 408
MhlI GDGCHC 3 cut(s) 217, 573, 810
MlsI TGGCCA 2 cut(s) 251, 738
MluCI AATT 3 cut(s) 641, 744, 801
MluNI TGGCCA 2 cut(s) 251, 738
MlyI GAGTC 1 cut(s) 764
MmeI TCCRAC 1 cut(s) 605
MnlI CCTC 4 cut(s) 100, 336, 427, 436
Mox20I TGGCCA 2 cut(s) 251, 738
Mph1103I ATGCAT 1 cut(s) 730
MroXI GAANNNNTTC 1 cut(s) 771
MscI TGGCCA 2 cut(s) 251, 738
MseI TTAA 1 cut(s) 838
Msp20I TGGCCA 2 cut(s) 251, 738
MspA1I CMGCKG 1 cut(s) 676
MspI CCGG 1 cut(s) 223
MspR9I CCNGG 2 cut(s) 224, 701
MvaI CCWGG 1 cut(s) 701
MwoI GCNNNNNNNGC 3 cut(s) 347, 523, 682
NciI CCSGG 1 cut(s) 224
NdeII GATC 3 cut(s) 408, 538, 793
NlaIII CATG 4 cut(s) 267, 340, 494, 743
NlaIV GGNNCC 2 cut(s) 227, 611
NmuCI GTSAC 2 cut(s) 112, 364
NsiI ATGCAT 1 cut(s) 730
PdmI GAANNNNTTC 1 cut(s) 771
PfeI GAWTC 2 cut(s) 355, 782
PflMI CCANNNNNTGG 1 cut(s) 706
PfoI TCCNGGA 1 cut(s) 222
PkrI GCNGC 1 cut(s) 678
PleI GAGTC 1 cut(s) 763
PpsI GAGTC 1 cut(s) 763
PpuMI RGGWCCY 1 cut(s) 226
Psp124BI GAGCTC 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 699
PspGI CCWGG 1 cut(s) 699
PspN4I GGNNCC 2 cut(s) 227, 611
PspPI GGNCC 2 cut(s) 226, 610
PspPPI RGGWCCY 1 cut(s) 226
PsuI RGATCY 1 cut(s) 408
PvuII CAGCTG 1 cut(s) 676
RsaI GTAC 4 cut(s) 390, 647, 689, 819
RsaNI GTAC 4 cut(s) 389, 646, 688, 818
SacI GAGCTC 1 cut(s) 217
SaqAI TTAA 1 cut(s) 838
SatI GCNGC 1 cut(s) 677
Sau3AI GATC 3 cut(s) 408, 538, 793
Sau96I GGNCC 2 cut(s) 226, 610
ScaI AGTACT 2 cut(s) 390, 819
SchI GAGTC 1 cut(s) 764
ScrFI CCNGG 2 cut(s) 224, 701
SduI GDGCHC 3 cut(s) 217, 573, 810
SfaNI GCATC 2 cut(s) 715, 737
SinI GGWCC 2 cut(s) 226, 610
SpeI ACTAGT 1 cut(s) 788
Sse9I AATT 3 cut(s) 641, 744, 801
SspMI CTAG 4 cut(s) 621, 732, 789, 834
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 2 cut(s) 222, 699
TaaI ACNGT 5 cut(s) 40, 47, 307, 403, 650
TaiI ACGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 405
TasI AATT 3 cut(s) 641, 744, 801
TatI WGTACW 4 cut(s) 388, 645, 687, 817
TfiI GAWTC 2 cut(s) 355, 782
Tru1I TTAA 1 cut(s) 838
Tru9I TTAA 1 cut(s) 838
TscAI CASTG 2 cut(s) 50, 655
TseFI GTSAC 2 cut(s) 112, 364
TseI GCWGC 1 cut(s) 676
Tsp45I GTSAC 2 cut(s) 112, 364
TspDTI ATGAA 3 cut(s) 654, 756, 764
TspGWI ACGGA 1 cut(s) 352
TspRI CASTG 2 cut(s) 50, 655
Van91I CCANNNNNTGG 1 cut(s) 706
VpaK11BI GGWCC 2 cut(s) 226, 610
XmnI GAANNNNTTC 1 cut(s) 771
XspI CTAG 4 cut(s) 621, 732, 789, 834
ZrmI AGTACT 2 cut(s) 390, 819
Zsp2I ATGCAT 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.