Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006274

Physical Location & Seq

Genomic Coordinates Forward (+)

1464239 .. 1465875

Gene Structure 1637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G05090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGTTTGAAGGTAAAAAAGATGCTCAGAGAAATAGTTCTTCTAAAGAGGATGAGAGTTTTGGTATGTTTGAAGGTAAAGAAGATGCTCAGAGAAATAGTTCTTCTAAAGAGAATGAAAATTTTGGTTTCTTTGAGGGTGCACCATTATCAAATGCTGACCTTAAGTCTTTTGATGACAAGATTGTTGCTGCTTCTTCTGATTGGGACTCTGACTTTCAATCTGCTGATCAAAATCTTTCTCAGAAAAAGATTGATGGTGACCCATTTGTAAGTTCTCCAGTTGATTTGGCTGCTCATATGGATTCTGTCTTTGGTTCCGGAAAAGATTTACTCTATGCACAACCGGCAGATTCTTCAACTGCTTATGTTTCAAAAGCTGGCGATTGGTTGCAAGATGATTTATTTGGTAATGTCACTGGTGAGGCCCAAACCAACGACTCAGCCGTCCATGACAAGAATGAGGGACAGATTGTCGGTGGCAATGGAAATTCATCCATGGATATTGATTGGATCGGAGATGATCTATGGCAAACCAATGAAAAAAAATCCATTGAGAAGACCCCTACAGATGTTAATGATGATGATGACGATGACTGGAATGATTTTGCAAGCTCGGCTAACTCCAAGACTCCTAATAATCCACTTTCTCAAACCATGGAAAGTTCCCAATTTGAGATTTTTTATGGACATGCGCAAGATAAGAACGGTGTTAAAGAACAGAGCGTGGATGAGAAGCAGAATACTGATACAAGCGTGATGTCTGACATAGGCAAATGTCAAGAAGATGATCTCTTTGGGACTTGGGATAGTTTCACATCCTCAACCATTCTGCAGACATCTCTGCAGCCTCCCACCATTCATGCGAATCCCTCTGGTGAAAAAAATCCGGAAATGAACTTGTTTGGGGAAAATAACAATAACAGAGACCTTGATTTTGATAGCATCTCACGTTCTGATTTCTTTTCTGAAAGTAGTGGCGGCAAAACCAACTCAGAGGAAGTCAAAGTCATACCTTCTGGAACCTCAACCTTAGACAGACCGAGTGATCCTGATGGTAGTAAAGATCAAACAGTTGATCTTGTTGTAGGCACAACGACAACAGTTCCCAAGTCAATGAGTGATGTTGCGGAGGAGCTGATGTCACAGATGCATGATCTCTCATTTATGCTCGAGACCAAACTTTCAGTGCCTCCAATCTCCAAGACAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

403

Amino Acids

44.03

Weight (kDa)

4.16

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05087 AT1G05087 AT1G05090 AT4G20720 AT4G20720
fragaria_vesca	FvH4_6g42760 FvH4_6g42760
malus_domestica	MD09G1071600.v1.1 MD17G1100100.v1.1 MD17G1100200.v1.1 MD17G1100500.v1.1
prunus_persica	Prupe.3G214000_v2.0.a1 Prupe.3G214000_v2.0.a1
pyrus_communis	pycom09g03450 pycom17g09500 pycom17g09530
rosa_chinensis	RchiOBHm_Chr2g0158651
rosa_laevigata	RLG00000021103
rosa_multiflora	Rmu_co8052378.1_g000001 Rmu_sc0004188.1_g000013
rosa_roxburghii	Rroxscaffold_2G00091140
rosa_rugosa	Rorug02G0471100
rosa_samantha	Rh2AG536900 Rh2BG550100 Rh2CG520600 Rh2DG559700
rosa_wichuraiana	Rw2G044450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	443
Acc16I	TGCGCA	1 cut(s)	693
AccIII	TCCGGA	2 cut(s)	317, 886
AciI	CCGC	2 cut(s)	978, 1127
AclWI	GGATC	2 cut(s)	518, 1040
AcsI	RAATTY	2 cut(s)	118, 487
AflII	CTTAAG	1 cut(s)	161
AgsI	TTSAA	5 cut(s)	8, 71, 218, 357, 372
AhdI	GACNNNNNGTC	2 cut(s)	163, 470
AluBI	AGCT	3 cut(s)	377, 612, 1135
AluI	AGCT	3 cut(s)	377, 612, 1135
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	2 cut(s)	918, 1166
Alw44I	GTGCAC	1 cut(s)	138
AlwI	GGATC	2 cut(s)	518, 1040
Ama87I	CYCGRG	1 cut(s)	1169
Aor13HI	TCCGGA	2 cut(s)	317, 886
AoxI	GGCC	1 cut(s)	423
ApaLI	GTGCAC	1 cut(s)	138
ApeKI	GCWGC	3 cut(s)	188, 290, 844
ApoI	RAATTY	2 cut(s)	118, 487
ArsI	GACNNNNNNTTYG	2 cut(s)	917, 949
Asp700I	GAANNNNTTC	2 cut(s)	34, 97
AspLEI	GCGC	1 cut(s)	694
AspS9I	GGNCC	1 cut(s)	424
AsuHPI	GGTGA	3 cut(s)	269, 431, 887
AvaI	CYCGRG	1 cut(s)	1169
BaeGI	GKGCMC	1 cut(s)	142
BaeI	ACNNNNGTAYC	2 cut(s)	738, 771
BbsI	GAAGAC	1 cut(s)	563
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	3 cut(s)	175, 277, 856
BccI	CCATC	2 cut(s)	248, 1046
BceAI	ACGGC	1 cut(s)	428
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	918, 1166
BfmI	CTRYAG	3 cut(s)	564, 830, 842
BfrI	CTTAAG	1 cut(s)	161
BisI	GCNGC	4 cut(s)	189, 291, 845, 979
BlsI	GCNGC	4 cut(s)	190, 292, 846, 980
BmeRI	GACNNNNNGTC	2 cut(s)	163, 470
BmeT110I	CYCGRG	1 cut(s)	1169
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	2 cut(s)	316, 1021
BmsI	GCATC	4 cut(s)	10, 73, 951, 1137
BpiI	GAAGAC	1 cut(s)	563
BpmI	CTGGAG	1 cut(s)	261
BsaBI	GATNNNNATC	1 cut(s)	231
BsaI	GGTCTC	2 cut(s)	918, 1166
BsaJI	CCNNGG	2 cut(s)	495, 654
BsaWI	WCCGGW	2 cut(s)	317, 886
BsaXI	ACNNNNNCTCC	2 cut(s)	1124, 1154
Bse118I	RCCGGY	1 cut(s)	343
Bse1I	ACTGG	3 cut(s)	278, 421, 599
Bse3DI	GCAATG	1 cut(s)	487
Bse8I	GATNNNNATC	1 cut(s)	231
BseAI	TCCGGA	2 cut(s)	317, 886
BseDI	CCNNGG	2 cut(s)	495, 654
BseGI	GGATG	4 cut(s)	55, 491, 733, 815
BseJI	GATNNNNATC	1 cut(s)	231
BseMI	GCAATG	1 cut(s)	487
BseMII	CTCAG	5 cut(s)	38, 101, 254, 453, 1005
BseNI	ACTGG	3 cut(s)	278, 421, 599
BseRI	GAGGAG	1 cut(s)	1145
BseSI	GKGCMC	1 cut(s)	142
BseXI	GCAGC	3 cut(s)	175, 277, 856
BshFI	GGCC	1 cut(s)	425
BsiHKAI	GWGCWC	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	1169
BsiSI	CCGG	3 cut(s)	318, 344, 887
BslFI	GGGAC	3 cut(s)	218, 477, 811
BsmAI	GTCTC	2 cut(s)	918, 1166
BsmFI	GGGAC	3 cut(s)	218, 477, 811
BsnI	GGCC	1 cut(s)	425
Bso31I	GGTCTC	2 cut(s)	918, 1166
BsoBI	CYCGRG	1 cut(s)	1169
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp13I	TCCGGA	2 cut(s)	317, 886
Bsp143I	GATC	8 cut(s)	226, 510, 520, 787, 1045, 1063, 1075, 1153
Bsp19I	CCATGG	2 cut(s)	495, 654
BspACI	CCGC	2 cut(s)	978, 1127
BspANI	GGCC	1 cut(s)	425
BspCNI	CTCAG	5 cut(s)	37, 100, 253, 452, 1004
BspEI	TCCGGA	2 cut(s)	317, 886
BspLI	GGNNCC	2 cut(s)	316, 1021
BspMAI	CTGCAG	2 cut(s)	834, 846
BspPI	GGATC	2 cut(s)	518, 1040
BspTI	CTTAAG	1 cut(s)	161
BspTNI	GGTCTC	2 cut(s)	918, 1166
BsrDI	GCAATG	1 cut(s)	487
BsrFI	RCCGGY	1 cut(s)	343
BsrI	ACTGG	3 cut(s)	278, 421, 599
BssAI	RCCGGY	1 cut(s)	343
BssECI	CCNNGG	2 cut(s)	495, 654
BssMI	GATC	8 cut(s)	226, 510, 520, 787, 1045, 1063, 1075, 1153
BssT1I	CCWWGG	2 cut(s)	495, 654
Bst4CI	ACNGT	3 cut(s)	707, 1072, 1102
BstAFI	CTTAAG	1 cut(s)	161
BstC8I	GCNNGC	2 cut(s)	379, 610
BstDEI	CTNAG	6 cut(s)	24, 87, 240, 439, 991, 1030
BstDSI	CCRYGG	2 cut(s)	495, 654
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	4 cut(s)	55, 491, 733, 815
BstHHI	GCGC	1 cut(s)	694
BstKTI	GATC	8 cut(s)	229, 513, 523, 790, 1048, 1066, 1078, 1156
BstMAI	GTCTC	2 cut(s)	918, 1166
BstMBI	GATC	8 cut(s)	226, 510, 520, 787, 1045, 1063, 1075, 1153
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 614
BstNSI	RCATGY	1 cut(s)	692
BstPI	GGTNACC	1 cut(s)	257
BstSFI	CTRYAG	3 cut(s)	564, 830, 842
BstSLI	GKGCMC	1 cut(s)	142
BstV1I	GCAGC	3 cut(s)	175, 277, 856
BstV2I	GAAGAC	1 cut(s)	563
BsuRI	GGCC	1 cut(s)	425
BtgI	CCRYGG	2 cut(s)	495, 654
BtsCI	GGATG	4 cut(s)	55, 491, 733, 815
BtsIMutI	CAGTG	2 cut(s)	414, 1191
Cac8I	GCNNGC	2 cut(s)	379, 610
CfoI	GCGC	1 cut(s)	694
Cfr10I	RCCGGY	1 cut(s)	343
Cfr13I	GGNCC	1 cut(s)	424
CviAII	CATG	6 cut(s)	449, 496, 655, 689, 860, 1151
CviJI	RGCY	8 cut(s)	290, 377, 425, 443, 612, 617, 847, 1135
CviKI_1	RGCY	8 cut(s)	290, 377, 425, 443, 612, 617, 847, 1135
DdeI	CTNAG	6 cut(s)	24, 87, 240, 439, 991, 1030
DpnI	GATC	8 cut(s)	228, 512, 522, 789, 1047, 1065, 1077, 1155
DpnII	GATC	8 cut(s)	226, 510, 520, 787, 1045, 1063, 1075, 1153
DrdI	GACNNNNNNGTC	1 cut(s)	443
DriI	GACNNNNNGTC	2 cut(s)	163, 470
DseDI	GACNNNNNNGTC	1 cut(s)	443
Eam1105I	GACNNNNNGTC	2 cut(s)	163, 470
Eco130I	CCWWGG	2 cut(s)	495, 654
Eco31I	GGTCTC	2 cut(s)	918, 1166
Eco88I	CYCGRG	1 cut(s)	1169
Eco91I	GGTNACC	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	257
EcoT14I	CCWWGG	2 cut(s)	495, 654
EcoT22I	ATGCAT	1 cut(s)	1152
ErhI	CCWWGG	2 cut(s)	495, 654
FaeI	CATG	6 cut(s)	452, 499, 658, 692, 863, 1154
FaqI	GGGAC	3 cut(s)	218, 477, 811
FatI	CATG	6 cut(s)	448, 495, 654, 688, 859, 1150
FauNDI	CATATG	1 cut(s)	297
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	4 cut(s)	189, 291, 845, 979
FokI	GGATG	4 cut(s)	62, 478, 740, 802
Fsp4HI	GCNGC	4 cut(s)	189, 291, 845, 979
FspI	TGCGCA	1 cut(s)	693
GlaI	GCGC	1 cut(s)	693
GluI	GCNGC	4 cut(s)	189, 291, 845, 979
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	425
HapII	CCGG	3 cut(s)	318, 344, 887
HhaI	GCGC	1 cut(s)	694
Hin1II	CATG	6 cut(s)	452, 499, 658, 692, 863, 1154
Hin6I	GCGC	1 cut(s)	692
HinP1I	GCGC	1 cut(s)	692
HinfI	GANTC	6 cut(s)	206, 302, 350, 437, 628, 865
HpaII	CCGG	3 cut(s)	318, 344, 887
HphI	GGTGA	3 cut(s)	269, 431, 887
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188III	TCNNGA	6 cut(s)	318, 779, 887, 1017, 1049, 1171
Hpy8I	GTNNAC	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	65, 1023
HpyCH4III	ACNGT	3 cut(s)	707, 1072, 1102
HpyCH4IV	ACGT	1 cut(s)	949
HpyCH4V	TGCA	7 cut(s)	140, 338, 391, 608, 832, 844, 1150
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 614
HpyF3I	CTNAG	6 cut(s)	24, 87, 240, 439, 991, 1030
HpySE526I	ACGT	1 cut(s)	949
Hsp92II	CATG	6 cut(s)	452, 499, 658, 692, 863, 1154
HspAI	GCGC	1 cut(s)	692
Kpn2I	TCCGGA	2 cut(s)	317, 886
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	8 cut(s)	226, 510, 520, 787, 1045, 1063, 1075, 1153
LmnI	GCTCC	1 cut(s)	1132
Lsp1109I	GCAGC	3 cut(s)	175, 277, 856
LweI	GCATC	4 cut(s)	10, 73, 951, 1137
MaeII	ACGT	1 cut(s)	949
MaeIII	GTNAC	3 cut(s)	257, 412, 1140
MalI	GATC	8 cut(s)	228, 512, 522, 789, 1047, 1065, 1077, 1155
MboI	GATC	8 cut(s)	226, 510, 520, 787, 1045, 1063, 1075, 1153
MboII	GAAGA	7 cut(s)	30, 92, 93, 186, 345, 568, 794
MhlI	GDGCHC	1 cut(s)	142
MluCI	AATT	3 cut(s)	118, 487, 668
MlyI	GAGTC	3 cut(s)	200, 431, 622
Mph1103I	ATGCAT	1 cut(s)	1152
MroI	TCCGGA	2 cut(s)	317, 886
MroXI	GAANNNNTTC	2 cut(s)	34, 97
MseI	TTAA	3 cut(s)	162, 573, 711
MspCI	CTTAAG	1 cut(s)	161
MspI	CCGG	3 cut(s)	318, 344, 887
MwoI	GCNNNNNNNGC	2 cut(s)	344, 614
NcoI	CCATGG	2 cut(s)	495, 654
NdeI	CATATG	1 cut(s)	297
NdeII	GATC	8 cut(s)	226, 510, 520, 787, 1045, 1063, 1075, 1153
NlaIII	CATG	6 cut(s)	452, 499, 658, 692, 863, 1154
NlaIV	GGNNCC	2 cut(s)	316, 1021
NmeAIII	GCCGAG	1 cut(s)	593
NmuCI	GTSAC	3 cut(s)	257, 412, 1140
NsbI	TGCGCA	1 cut(s)	693
NsiI	ATGCAT	1 cut(s)	1152
NspI	RCATGY	1 cut(s)	692
PaeR7I	CTCGAG	1 cut(s)	1169
PcsI	WCGNNNNNNNCGW	1 cut(s)	441
PdmI	GAANNNNTTC	2 cut(s)	34, 97
PfeI	GAWTC	3 cut(s)	302, 350, 865
PkrI	GCNGC	4 cut(s)	190, 292, 846, 980
PleI	GAGTC	3 cut(s)	200, 431, 622
PpsI	GAGTC	3 cut(s)	200, 431, 622
PspEI	GGTNACC	1 cut(s)	257
PspN4I	GGNNCC	2 cut(s)	316, 1021
PspPI	GGNCC	1 cut(s)	424
PstI	CTGCAG	2 cut(s)	834, 846
SaqAI	TTAA	3 cut(s)	162, 573, 711
SatI	GCNGC	4 cut(s)	189, 291, 845, 979
Sau3AI	GATC	8 cut(s)	226, 510, 520, 787, 1045, 1063, 1075, 1153
Sau96I	GGNCC	1 cut(s)	424
SchI	GAGTC	3 cut(s)	200, 431, 622
SduI	GDGCHC	1 cut(s)	142
SfaNI	GCATC	4 cut(s)	10, 73, 951, 1137
SfcI	CTRYAG	3 cut(s)	564, 830, 842
Sfr274I	CTCGAG	1 cut(s)	1169
SlaI	CTCGAG	1 cut(s)	1169
SmlI	CTYRAG	2 cut(s)	161, 1169
SmoI	CTYRAG	2 cut(s)	161, 1169
Sse9I	AATT	3 cut(s)	118, 487, 668
SsiI	CCGC	2 cut(s)	978, 1127
StyI	CCWWGG	2 cut(s)	495, 654
TaaI	ACNGT	3 cut(s)	707, 1072, 1102
TaiI	ACGT	1 cut(s)	952
TaqI	TCGA	1 cut(s)	1170
TaqII	GACCGA	1 cut(s)	1054
TasI	AATT	3 cut(s)	118, 487, 668
TauI	GCSGC	1 cut(s)	981
TfiI	GAWTC	3 cut(s)	302, 350, 865
Tru1I	TTAA	3 cut(s)	162, 573, 711
Tru9I	TTAA	3 cut(s)	162, 573, 711
TscAI	CASTG	2 cut(s)	421, 1191
TseFI	GTSAC	3 cut(s)	257, 412, 1140
TseI	GCWGC	3 cut(s)	188, 290, 844
Tsp45I	GTSAC	3 cut(s)	257, 412, 1140
TspDTI	ATGAA	5 cut(s)	129, 480, 552, 848, 908
TspRI	CASTG	2 cut(s)	421, 1191
Vha464I	CTTAAG	1 cut(s)	161
VneI	GTGCAC	1 cut(s)	138
XapI	RAATTY	2 cut(s)	118, 487
XceI	RCATGY	1 cut(s)	692
XhoI	CTCGAG	1 cut(s)	1169
XmnI	GAANNNNTTC	2 cut(s)	34, 97
Zsp2I	ATGCAT	1 cut(s)	1152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.