Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0006274

Physical Location & Seq

Genomic Coordinates Reverse (-)

8514493 .. 8515433

Gene Structure 941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1100100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGATGATTCGTTTGATGCTTGGAATGATTTCGCAAGCTCGAGTAATGCACCAAATATTGTGGATAGTTCTGTTAAACAAAAGTGGTGTGGATTGGGTTCAAGACAACCAATTGCAGACCACTAGCAACAAGGCTCTTGATAATAAGACTACTGACGCGGATGGTGATTCATTTGATGCTTGGAATGATTTTGCTAGCTCGAAGAATGCATCAAATCTTGCAGATAATTCTGTAAAACAAAGTATTAATCAGACGACATCTGTTGACCATACTTCAGAAACAAATTTGTTCGGCACTAGCAGCTCCAGTGACTTGGATTTTGGTAGCTTTTTGCAACCAGATTTCTCACCAGGAGCATTGAACAGTTCCAACAGTTCAACTGTAGTGGATAGAGTGCACCTAGAGCCTTCTGTATTAGACAGGTTGGCTGATGCAAGCACTAACGATGGCAAAAAATCTGAAGATGTGGTGGAGGGCGGAGATGTTTCCAGCGTAAGAGCAGGGTCAAAATCTGACGATGTGGAGAGAATAATGTCAGAGATGCATGATCTCTCGTTTATGCTCGAAAGCACTCTTTCAATCCCTCCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

21.39

Weight (kDa)

4.43

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05087 AT1G05087 AT1G05090 AT4G20720 AT4G20720
fragaria_vesca	FvH4_6g42760 FvH4_6g42760
malus_domestica	MD09G1071600.v1.1 MD17G1100100.v1.1 MD17G1100200.v1.1 MD17G1100500.v1.1
prunus_persica	Prupe.3G214000_v2.0.a1 Prupe.3G214000_v2.0.a1
pyrus_communis	pycom09g03450 pycom17g09500 pycom17g09530
rosa_chinensis	RchiOBHm_Chr2g0158651
rosa_laevigata	RLG00000021103
rosa_multiflora	Rmu_co8052378.1_g000001 Rmu_sc0004188.1_g000013
rosa_roxburghii	Rroxscaffold_2G00091140
rosa_rugosa	Rorug02G0471100
rosa_samantha	Rh2AG536900 Rh2BG550100 Rh2CG520600 Rh2DG559700
rosa_wichuraiana	Rw2G044450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	158
AciI	CCGC	2 cut(s)	158, 477
AcsI	RAATTY	1 cut(s)	283
AcuI	CTGAAG	2 cut(s)	258, 480
AgsI	TTSAA	4 cut(s)	101, 361, 378, 579
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	4 cut(s)	38, 198, 303, 327
AluI	AGCT	4 cut(s)	38, 198, 303, 327
Alw21I	GWGCWC	1 cut(s)	399
Alw44I	GTGCAC	1 cut(s)	395
Ama87I	CYCGRG	1 cut(s)	39
ApaLI	GTGCAC	1 cut(s)	395
ApeKI	GCWGC	1 cut(s)	300
ApoI	RAATTY	1 cut(s)	283
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AseI	ATTAAT	1 cut(s)	246
Asp700I	GAANNNNTTC	1 cut(s)	28
AsuHPI	GGTGA	2 cut(s)	176, 339
AsuNHI	GCTAGC	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	39
BaeGI	GKGCMC	1 cut(s)	399
Bbv12I	GWGCWC	1 cut(s)	399
BbvI	GCAGC	1 cut(s)	312
BccI	CCATC	2 cut(s)	155, 440
BciT130I	CCWGG	1 cut(s)	351
BfaI	CTAG	4 cut(s)	123, 195, 297, 401
BfmI	CTRYAG	1 cut(s)	381
BisI	GCNGC	1 cut(s)	301
BlsI	GCNGC	1 cut(s)	302
Bme1390I	CCNGG	1 cut(s)	351
BmeT110I	CYCGRG	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	5 cut(s)	6, 166, 218, 421, 531
BmtI	GCTAGC	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	289
Bse1I	ACTGG	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	351
BseGI	GGATG	1 cut(s)	166
BseNI	ACTGG	1 cut(s)	306
BseSI	GKGCMC	1 cut(s)	399
BseXI	GCAGC	1 cut(s)	312
Bsh1236I	CGCG	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	399
BsiHKCI	CYCGRG	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	211
BsoBI	CYCGRG	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp143I	GATC	1 cut(s)	547
BspACI	CCGC	2 cut(s)	158, 477
BspFNI	CGCG	1 cut(s)	158
BspOI	GCTAGC	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	306
BssMI	GATC	1 cut(s)	547
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	3 cut(s)	365, 374, 382
BstC8I	GCNNGC	3 cut(s)	36, 196, 436
BstF5I	GGATG	1 cut(s)	166
BstFNI	CGCG	1 cut(s)	158
BstKTI	GATC	1 cut(s)	550
BstMBI	GATC	1 cut(s)	547
BstMWI	GCNNNNNNNGC	2 cut(s)	300, 403
BstNI	CCWGG	1 cut(s)	351
BstSCI	CCNGG	1 cut(s)	349
BstSFI	CTRYAG	1 cut(s)	381
BstSLI	GKGCMC	1 cut(s)	399
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	312
BstXI	CCANNNNNNTGG	1 cut(s)	313
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	313
Cac8I	GCNNGC	3 cut(s)	36, 196, 436
CseI	GACGC	1 cut(s)	164
CspCI	CAANNNNNGTGG	4 cut(s)	41, 76, 366, 401
CviAII	CATG	1 cut(s)	545
CviJI	RGCY	7 cut(s)	38, 134, 198, 303, 327, 406, 428
CviKI_1	RGCY	7 cut(s)	38, 134, 198, 303, 327, 406, 428
DpnI	GATC	1 cut(s)	549
DpnII	GATC	1 cut(s)	547
EciI	GGCGGA	1 cut(s)	492
Eco57I	CTGAAG	2 cut(s)	258, 480
Eco88I	CYCGRG	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	349
EcoT22I	ATGCAT	2 cut(s)	211, 546
FaeI	CATG	1 cut(s)	548
FaiI	YATR	3 cut(s)	270, 546, 560
FatI	CATG	1 cut(s)	544
Fnu4HI	GCNGC	1 cut(s)	301
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	1 cut(s)	301
FspBI	CTAG	4 cut(s)	123, 195, 297, 401
GluI	GCNGC	1 cut(s)	301
GsuI	CTGGAG	1 cut(s)	289
HgaI	GACGC	1 cut(s)	164
Hin1II	CATG	1 cut(s)	548
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	2 cut(s)	7, 167
HphI	GGTGA	2 cut(s)	176, 339
Hpy166II	GTNNAC	2 cut(s)	265, 397
Hpy188I	TCNGA	5 cut(s)	252, 277, 460, 514, 538
Hpy188III	TCNNGA	2 cut(s)	101, 137
Hpy8I	GTNNAC	2 cut(s)	265, 397
HpyAV	CCTTC	1 cut(s)	417
HpyCH4III	ACNGT	3 cut(s)	365, 374, 382
HpyCH4V	TGCA	8 cut(s)	49, 115, 209, 221, 334, 397, 434, 544
HpyF10VI	GCNNNNNNNGC	2 cut(s)	300, 403
Hsp92II	CATG	1 cut(s)	548
Kzo9I	GATC	1 cut(s)	547
LmnI	GCTCC	2 cut(s)	308, 353
LpnPI	CCDG	7 cut(s)	319, 336, 351, 363, 406, 486, 502
Lsp1109I	GCAGC	1 cut(s)	312
LweI	GCATC	5 cut(s)	6, 166, 218, 421, 531
MaeI	CTAG	4 cut(s)	123, 195, 297, 401
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	1 cut(s)	549
MboI	GATC	1 cut(s)	547
MboII	GAAGA	2 cut(s)	214, 473
MfeI	CAATTG	1 cut(s)	110
MhlI	GDGCHC	1 cut(s)	399
MluCI	AATT	3 cut(s)	110, 226, 283
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	2 cut(s)	466, 594
Mph1103I	ATGCAT	2 cut(s)	211, 546
MroXI	GAANNNNTTC	1 cut(s)	28
MseI	TTAA	2 cut(s)	74, 246
MspR9I	CCNGG	1 cut(s)	351
MunI	CAATTG	1 cut(s)	110
Mva1269I	GAATGC	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	351
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	300, 403
NdeII	GATC	1 cut(s)	547
NheI	GCTAGC	1 cut(s)	194
NlaIII	CATG	1 cut(s)	548
NmuCI	GTSAC	1 cut(s)	308
NsiI	ATGCAT	2 cut(s)	211, 546
PaeR7I	CTCGAG	1 cut(s)	39
PctI	GAATGC	1 cut(s)	211
PdmI	GAANNNNTTC	1 cut(s)	28
PfeI	GAWTC	2 cut(s)	7, 167
PkrI	GCNGC	1 cut(s)	302
PshBI	ATTAAT	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PspXI	VCTCGAGB	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	74, 246
SatI	GCNGC	1 cut(s)	301
Sau3AI	GATC	1 cut(s)	547
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	1 cut(s)	399
SetI	ASST	6 cut(s)	40, 200, 305, 329, 402, 425
SfaNI	GCATC	5 cut(s)	6, 166, 218, 421, 531
SfcI	CTRYAG	1 cut(s)	381
Sfr274I	CTCGAG	1 cut(s)	39
SlaI	CTCGAG	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	3 cut(s)	110, 226, 283
SsiI	CCGC	2 cut(s)	158, 477
SspI	AATATT	1 cut(s)	57
SspMI	CTAG	4 cut(s)	123, 195, 297, 401
StyD4I	CCNGG	1 cut(s)	349
TaaI	ACNGT	3 cut(s)	365, 374, 382
TaqI	TCGA	3 cut(s)	40, 200, 564
TasI	AATT	3 cut(s)	110, 226, 283
TfiI	GAWTC	2 cut(s)	7, 167
Tru1I	TTAA	2 cut(s)	74, 246
Tru9I	TTAA	2 cut(s)	74, 246
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	1 cut(s)	300
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	313
VneI	GTGCAC	1 cut(s)	395
VspI	ATTAAT	1 cut(s)	246
XapI	RAATTY	1 cut(s)	283
XhoI	CTCGAG	1 cut(s)	39
XmnI	GAANNNNTTC	1 cut(s)	28
XspI	CTAG	4 cut(s)	123, 195, 297, 401
Zsp2I	ATGCAT	2 cut(s)	211, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.