Prupe.3G214000_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
21759152 .. 21761988
2837 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G214000.2

Sequence Viewer

Length: 1629 bp
ATGGCGATGGAAATCCCGACGGATATGATAAAGGAGGTGCAGATCTCGCTTCGGAGAGAAGCGAAGATGTCGTCGTATGACCCAGACGACACGCCGTTGCCAAATCTACCATCCGTCGAAGAAACCATAGCGGATTTGGATCCATCCCCGCCGTACCTACGGTGCAAGCATTGCAAGGGCAGATTGCTGAGGGGCGTTCAGTCACTTATTTGCGCCTTCTGTGGCAGAGAACATTGCAAGGACCTCCCTCCTGACCCCATCAATTTTCGCGACACTTTTGGCTACCGGTGGTTGCTCAAGTCCCTGAGCTTGGATGGATCGGAGATAGTAGAATTACCCACTGGAGCAGATGAGTTCAACAGAGGACAGACTGCTCGGAAGGATGATTTAAGTCTCTCTGATCTTTTGAATCTTGAAATAAAATGGACCTCTAAGCCAGAGAAAGTTGAGACTGATTTCTCAAATGAGACACCTACTCAGCCCAAAAGCTTACCAGATTTGGCCGGAGTCAATCTCGACAACTTTTTTTCTGAAGGAAAAAAAGATGCCGCAGTTAATATTTCTGAAGAGCAGCTGTTTGAGTCTAGCACACAGACTACCGGTGAAGAAATTAATGCTTTCGAAGTTCGTGAAACTCTTAGTTTGTTTGAGAATGTACAGCCTTTTGAGACAGTTGTGGAGTCTACTGAAGGAGAGAGTGGTGATTCCTTTTCAGGTTGGGCGGCAAATTTTCAGTCTGCTGCTTCTGAAACCCTTCCTCATGCTTCTGAAACTCTTCCTCATGCTTCTGAAAACCTTCATCAAGCTTCTGAAAACATTCCCCAAGAGTCAAAAGTAATTGACCCCTTTGTGGGTTCCACGGTGGATCTTTCAGCCCACATAGACACAGTATTCGGATCTGCAGTACACTCAACTGATGAAAAATCAAACCATAGTATGACTGGGTCTGCACCCTTGACTACCGACTGGTTTCGAGGTGATCTATTGGGTGTTTCCAACTCTGGGTTTGCTGGAGGTCCTGAACAGTTTGAAACGCTTGCTGAGGTGAAGGGTATAACTGAGAATGTGAATAACTCTTTTCCTGCTGATGTTGATAGGGTTCAAGACAATCAATTACAGACCACTAGCAACAATGCCCCTGATAATAAGACTACTGATGAGGATGAGGATTCATTTGATGCTTGGAATGATTTTGCGACCTCAAATAGTGCACCAAATCTTGTTGATAGTTCTTTAAAACAAAGTACTAATCAGACGACACCTGTTGACCAGACTTCTGTAGTGGATTTGTTCGGCACAGCTAGCAACTCCGGGGACTTGAATTTTGGTAGCTTATCCCAACCGGATTTCTCAGCAGGAGCATTTAACAGTTCCAATGGTTCAACTGTAGTGGATATGAAGCAGGCAGACTCCTCTGTTTTAGACAGTTTGGCTGATCTGAGCACAAAAGATGAAAAAAAATCTGAAGATGTTGCGGAGGGTGGAGATGTTTCTGGTGCAAGAGCAGGGTCAAAATCTGAAGATGCGGAGAGAATAATGTCACAGATGCATGATCTCTCTTTTATGCTTGAAAGCAGTCTTTCAATTCCTCCCAAGCGAGATGAATTACATTCGCATTCCCAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

543

Amino Acids

58.89

Weight (kDa)

4.31

Isoelectric Point (pI)

40.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 683
AccII CGCG 1 cut(s) 270
AciI CCGC 6 cut(s) 131, 149, 549, 722, 1475, 1526
AclWI GGATC 5 cut(s) 134, 147, 325, 873, 904
AcoI YGGCCR 1 cut(s) 501
AcsI RAATTY 2 cut(s) 727, 1321
AcuI CTGAAG 5 cut(s) 552, 585, 708, 1485, 1539
AfaI GTAC 4 cut(s) 155, 657, 906, 1246
AfiI CCNNNNNNNGG 4 cut(s) 310, 850, 851, 1002
AgeI ACCGGT 2 cut(s) 285, 599
AgsI TTSAA 9 cut(s) 358, 409, 416, 1031, 1103, 1321, 1383, 1571, 1584
AluBI AGCT 6 cut(s) 309, 489, 574, 806, 1301, 1332
AluI AGCT 6 cut(s) 309, 489, 574, 806, 1301, 1332
Alw21I GWGCWC 2 cut(s) 1213, 1445
Alw26I GTCTC 4 cut(s) 398, 443, 461, 662
Alw44I GTGCAC 1 cut(s) 1209
AlwI GGATC 5 cut(s) 134, 147, 325, 873, 904
AoxI GGCC 1 cut(s) 501
ApaLI GTGCAC 1 cut(s) 1209
ApeKI GCWGC 2 cut(s) 571, 740
ApoI RAATTY 2 cut(s) 727, 1321
ArsI GACNNNNNNTTYG 8 cut(s) 56, 88, 719, 751, 875, 907, 1307, 1339
AseI ATTAAT 1 cut(s) 612
AsiGI ACCGGT 2 cut(s) 285, 599
Asp700I GAANNNNTTC 4 cut(s) 753, 774, 795, 816
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 3 cut(s) 241, 426, 1016
AsuC2I CCSGG 1 cut(s) 1312
AsuHPI GGTGA 4 cut(s) 614, 713, 989, 1057
AsuII TTCGAA 1 cut(s) 621
AsuNHI GCTAGC 1 cut(s) 1301
AvaII GGWCC 3 cut(s) 241, 426, 1016
BaeGI GKGCMC 1 cut(s) 1213
BamHI GGATCC 1 cut(s) 139
Bbv12I GWGCWC 2 cut(s) 1213, 1445
BbvCI CCTCAGC 2 cut(s) 188, 1041
BbvI GCAGC 2 cut(s) 583, 727
BccI CCATC 4 cut(s) 118, 151, 266, 308
BceAI ACGGC 2 cut(s) 79, 136
BcnI CCSGG 1 cut(s) 1312
BcoDI GTCTC 4 cut(s) 398, 443, 461, 662
BfaI CTAG 3 cut(s) 585, 1125, 1302
BfmI CTRYAG 3 cut(s) 900, 1278, 1386
BglII AGATCT 1 cut(s) 42
BisI GCNGC 4 cut(s) 549, 572, 723, 741
BlsI GCNGC 4 cut(s) 550, 573, 724, 742
BmcAI AGTACT 1 cut(s) 1246
Bme1390I CCNGG 1 cut(s) 1312
Bme18I GGWCC 3 cut(s) 241, 426, 1016
BmgT120I GGNCC 3 cut(s) 241, 426, 1016
BmiI GGNNCC 2 cut(s) 141, 856
BmrFI CCNGG 1 cut(s) 1312
BmrI ACTGGG 1 cut(s) 951
BmsI GCATC 4 cut(s) 535, 1168, 1513, 1536
BmtI GCTAGC 1 cut(s) 1305
BmuI ACTGGG 1 cut(s) 951
BplI GAGNNNNNCTC 2 cut(s) 498, 530
BpmI CTGGAG 2 cut(s) 363, 1032
Bpu10I CCTNAGC 3 cut(s) 188, 305, 1041
Bpu14I TTCGAA 1 cut(s) 621
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 1312
BsaBI GATNNNNATC 2 cut(s) 11, 138
BsaJI CCNNGG 2 cut(s) 858, 1311
BsaWI WCCGGW 3 cut(s) 285, 599, 1342
Bsc4I CCNNNNNNNGG 4 cut(s) 310, 850, 851, 1002
Bse118I RCCGGY 2 cut(s) 285, 599
Bse1I ACTGG 3 cut(s) 346, 946, 971
Bse3DI GCAATG 2 cut(s) 169, 232
Bse8I GATNNNNATC 2 cut(s) 11, 138
BseDI CCNNGG 2 cut(s) 858, 1311
BseGI GGATG 5 cut(s) 110, 143, 319, 388, 1168
BseJI GATNNNNATC 2 cut(s) 11, 138
BseLI CCNNNNNNNGG 4 cut(s) 310, 850, 851, 1002
BseMI GCAATG 2 cut(s) 169, 232
BseMII CTCAG 7 cut(s) 179, 296, 491, 1032, 1050, 1365, 1430
BseNI ACTGG 3 cut(s) 346, 946, 971
BseRI GAGGAG 1 cut(s) 1402
BseSI GKGCMC 1 cut(s) 1213
BseXI GCAGC 2 cut(s) 583, 727
BsgI GTGCAG 2 cut(s) 59, 933
Bsh1236I CGCG 1 cut(s) 270
BshFI GGCC 1 cut(s) 503
BshTI ACCGGT 2 cut(s) 285, 599
BsiHKAI GWGCWC 2 cut(s) 1213, 1445
BsiSI CCGG 5 cut(s) 286, 504, 600, 1311, 1343
BslFI GGGAC 2 cut(s) 286, 1328
BslI CCNNNNNNNGG 4 cut(s) 310, 850, 851, 1002
BsmAI GTCTC 4 cut(s) 398, 443, 461, 662
BsmFI GGGAC 2 cut(s) 286, 1328
BsmI GAATGC 1 cut(s) 1615
BsnI GGCC 1 cut(s) 503
Bsp119I TTCGAA 1 cut(s) 621
Bsp1286I GDGCHC 2 cut(s) 1213, 1445
Bsp1407I TGTACA 1 cut(s) 655
Bsp143I GATC 9 cut(s) 42, 139, 317, 400, 865, 896, 979, 1435, 1552
Bsp68I TCGCGA 1 cut(s) 270
BspACI CCGC 6 cut(s) 131, 149, 549, 722, 1475, 1526
BspANI GGCC 1 cut(s) 503
BspCNI CTCAG 7 cut(s) 180, 297, 490, 1033, 1051, 1364, 1431
BspFNI CGCG 1 cut(s) 270
BspLI GGNNCC 2 cut(s) 141, 856
BspMAI CTGCAG 1 cut(s) 904
BspOI GCTAGC 1 cut(s) 1305
BspPI GGATC 5 cut(s) 134, 147, 325, 873, 904
BspQI GCTCTTC 1 cut(s) 561
BspT104I TTCGAA 1 cut(s) 621
BsrDI GCAATG 2 cut(s) 169, 232
BsrFI RCCGGY 2 cut(s) 285, 599
BsrGI TGTACA 1 cut(s) 655
BsrI ACTGG 3 cut(s) 346, 946, 971
BssAI RCCGGY 2 cut(s) 285, 599
BssECI CCNNGG 2 cut(s) 858, 1311
BssMI GATC 9 cut(s) 42, 139, 317, 400, 865, 896, 979, 1435, 1552
Bst4CI ACNGT 8 cut(s) 162, 673, 862, 889, 1026, 1370, 1387, 1427
Bst6I CTCTTC 2 cut(s) 561, 780
BstAPI GCANNNNNTGC 1 cut(s) 171
BstAUI TGTACA 1 cut(s) 655
BstBI TTCGAA 1 cut(s) 621
BstC8I GCNNGC 4 cut(s) 167, 1038, 1303, 1404
BstDEI CTNAG 9 cut(s) 188, 305, 432, 477, 638, 1041, 1059, 1351, 1439
BstDSI CCRYGG 1 cut(s) 858
BstF5I GGATG 5 cut(s) 110, 143, 319, 388, 1168
BstFNI CGCG 1 cut(s) 270
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 9 cut(s) 45, 142, 320, 403, 868, 899, 982, 1438, 1555
BstMAI GTCTC 4 cut(s) 398, 443, 461, 662
BstMBI GATC 9 cut(s) 42, 139, 317, 400, 865, 896, 979, 1435, 1552
BstMWI GCNNNNNNNGC 3 cut(s) 46, 171, 1302
BstSCI CCNGG 1 cut(s) 1310
BstSFI CTRYAG 3 cut(s) 900, 1278, 1386
BstSLI GKGCMC 1 cut(s) 1213
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 2 cut(s) 583, 727
BstX2I RGATCY 4 cut(s) 42, 139, 865, 896
BstYI RGATCY 4 cut(s) 42, 139, 865, 896
BsuRI GGCC 1 cut(s) 503
BtgI CCRYGG 1 cut(s) 858
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 5 cut(s) 110, 143, 319, 388, 1168
BtsIMutI CAGTG 1 cut(s) 339
BtuMI TCGCGA 1 cut(s) 270
Cac8I GCNNGC 4 cut(s) 167, 1038, 1303, 1404
CfoI GCGC 1 cut(s) 215
Cfr10I RCCGGY 2 cut(s) 285, 599
Cfr13I GGNCC 3 cut(s) 241, 426, 1016
Csp6I GTAC 4 cut(s) 154, 656, 905, 1245
CspAI ACCGGT 2 cut(s) 285, 599
CspCI CAANNNNNGTGG 2 cut(s) 1371, 1406
CviAII CATG 3 cut(s) 761, 782, 1550
CviQI GTAC 4 cut(s) 154, 656, 905, 1245
DdeI CTNAG 9 cut(s) 188, 305, 432, 477, 638, 1041, 1059, 1351, 1439
DpnI GATC 9 cut(s) 44, 141, 319, 402, 867, 898, 981, 1437, 1554
DpnII GATC 9 cut(s) 42, 139, 317, 400, 865, 896, 979, 1435, 1552
DraI TTTAAA 1 cut(s) 1236
EaeI YGGCCR 1 cut(s) 501
Eam1104I CTCTTC 2 cut(s) 561, 780
EarI CTCTTC 2 cut(s) 561, 780
Eco47I GGWCC 3 cut(s) 241, 426, 1016
Eco57I CTGAAG 5 cut(s) 552, 585, 708, 1485, 1539
EcoO109I RGGNCCY 2 cut(s) 241, 1016
EcoT22I ATGCAT 1 cut(s) 1551
FaeI CATG 3 cut(s) 764, 785, 1553
FaqI GGGAC 2 cut(s) 286, 1328
FatI CATG 3 cut(s) 760, 781, 1549
FauI CCCGC 1 cut(s) 156
FblI GTMKAC 1 cut(s) 683
Fnu4HI GCNGC 4 cut(s) 549, 572, 723, 741
FokI GGATG 5 cut(s) 97, 130, 326, 395, 1175
Fsp4HI GCNGC 4 cut(s) 549, 572, 723, 741
FspBI CTAG 3 cut(s) 585, 1125, 1302
GlaI GCGC 1 cut(s) 214
GluI GCNGC 4 cut(s) 549, 572, 723, 741
GsuI CTGGAG 2 cut(s) 363, 1032
HaeIII GGCC 1 cut(s) 503
HapII CCGG 5 cut(s) 286, 504, 600, 1311, 1343
HhaI GCGC 1 cut(s) 215
Hin1II CATG 3 cut(s) 764, 785, 1553
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HincII GTYRAC 1 cut(s) 1267
HindII GTYRAC 1 cut(s) 1267
HindIII AAGCTT 2 cut(s) 487, 804
HinfI GANTC 8 cut(s) 409, 507, 581, 680, 704, 827, 1169, 1409
HpaII CCGG 5 cut(s) 286, 504, 600, 1311, 1343
HphI GGTGA 4 cut(s) 614, 713, 989, 1057
Hpy166II GTNNAC 4 cut(s) 684, 907, 1211, 1267
Hpy188III TCNNGA 8 cut(s) 16, 251, 269, 413, 515, 629, 1019, 1103
Hpy8I GTNNAC 4 cut(s) 684, 907, 1211, 1267
Hpy99I CGWCG 3 cut(s) 22, 76, 119
HpyAV CCTTC 7 cut(s) 226, 373, 527, 683, 764, 806, 1042
HpyCH4III ACNGT 8 cut(s) 162, 673, 862, 889, 1026, 1370, 1387, 1427
HpyCH4V TGCA 9 cut(s) 40, 165, 174, 237, 902, 950, 1211, 1499, 1549
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 171, 1302
HpyF3I CTNAG 9 cut(s) 188, 305, 432, 477, 638, 1041, 1059, 1351, 1439
Hsp92II CATG 3 cut(s) 764, 785, 1553
HspAI GCGC 1 cut(s) 213
Kzo9I GATC 9 cut(s) 42, 139, 317, 400, 865, 896, 979, 1435, 1552
LguI GCTCTTC 1 cut(s) 561
LmnI GCTCC 2 cut(s) 344, 1358
Lsp1109I GCAGC 2 cut(s) 583, 727
LweI GCATC 4 cut(s) 535, 1168, 1513, 1536
MaeI CTAG 3 cut(s) 585, 1125, 1302
MaeIII GTNAC 2 cut(s) 201, 1539
MalI GATC 9 cut(s) 44, 141, 319, 402, 867, 898, 981, 1437, 1554
MboI GATC 9 cut(s) 42, 139, 317, 400, 865, 896, 979, 1435, 1552
MboII GAAGA 7 cut(s) 76, 131, 578, 617, 767, 1478, 1532
MflI RGATCY 4 cut(s) 42, 139, 865, 896
MhlI GDGCHC 2 cut(s) 1213, 1445
MluCI AATT 9 cut(s) 262, 332, 609, 727, 837, 1112, 1321, 1584, 1604
MlyI GAGTC 5 cut(s) 516, 590, 689, 836, 1403
MmeI TCCRAC 1 cut(s) 1020
Mph1103I ATGCAT 1 cut(s) 1551
MroXI GAANNNNTTC 4 cut(s) 753, 774, 795, 816
MseI TTAA 5 cut(s) 389, 555, 612, 1235, 1365
MspA1I CMGCKG 1 cut(s) 574
MspI CCGG 5 cut(s) 286, 504, 600, 1311, 1343
MspR9I CCNGG 1 cut(s) 1312
Mva1269I GAATGC 1 cut(s) 1615
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 3 cut(s) 46, 171, 1302
NciI CCSGG 1 cut(s) 1312
NdeII GATC 9 cut(s) 42, 139, 317, 400, 865, 896, 979, 1435, 1552
NheI GCTAGC 1 cut(s) 1301
NlaIII CATG 3 cut(s) 764, 785, 1553
NlaIV GGNNCC 2 cut(s) 141, 856
NmuCI GTSAC 2 cut(s) 201, 1539
NruI TCGCGA 1 cut(s) 270
NsiI ATGCAT 1 cut(s) 1551
NspV TTCGAA 1 cut(s) 621
PciSI GCTCTTC 1 cut(s) 561
PctI GAATGC 1 cut(s) 1615
PdmI GAANNNNTTC 4 cut(s) 753, 774, 795, 816
PfeI GAWTC 3 cut(s) 409, 704, 1169
PflFI GACNNNGTC 1 cut(s) 943
PinAI ACCGGT 2 cut(s) 285, 599
PkrI GCNGC 4 cut(s) 550, 573, 724, 742
PleI GAGTC 5 cut(s) 515, 589, 688, 835, 1403
PpsI GAGTC 5 cut(s) 515, 589, 688, 835, 1403
PpuMI RGGWCCY 2 cut(s) 241, 1016
PshBI ATTAAT 1 cut(s) 612
Psp5II RGGWCCY 2 cut(s) 241, 1016
PspN4I GGNNCC 2 cut(s) 141, 856
PspPI GGNCC 3 cut(s) 241, 426, 1016
PspPPI RGGWCCY 2 cut(s) 241, 1016
PstI CTGCAG 1 cut(s) 904
PsuI RGATCY 4 cut(s) 42, 139, 865, 896
PsyI GACNNNGTC 1 cut(s) 943
PvuII CAGCTG 1 cut(s) 574
RruI TCGCGA 1 cut(s) 270
RsaI GTAC 4 cut(s) 155, 657, 906, 1246
RsaNI GTAC 4 cut(s) 154, 656, 905, 1245
SapI GCTCTTC 1 cut(s) 561
SaqAI TTAA 5 cut(s) 389, 555, 612, 1235, 1365
SatI GCNGC 4 cut(s) 549, 572, 723, 741
Sau3AI GATC 9 cut(s) 42, 139, 317, 400, 865, 896, 979, 1435, 1552
Sau96I GGNCC 3 cut(s) 241, 426, 1016
ScaI AGTACT 1 cut(s) 1246
SchI GAGTC 5 cut(s) 516, 590, 689, 836, 1403
ScrFI CCNGG 1 cut(s) 1312
SduI GDGCHC 2 cut(s) 1213, 1445
SfaNI GCATC 4 cut(s) 535, 1168, 1513, 1536
SfcI CTRYAG 3 cut(s) 900, 1278, 1386
SfuI TTCGAA 1 cut(s) 621
SinI GGWCC 3 cut(s) 241, 426, 1016
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 9 cut(s) 262, 332, 609, 727, 837, 1112, 1321, 1584, 1604
SsiI CCGC 6 cut(s) 131, 149, 549, 722, 1475, 1526
SspI AATATT 1 cut(s) 559
SspMI CTAG 3 cut(s) 585, 1125, 1302
StyD4I CCNGG 1 cut(s) 1310
TaaI ACNGT 8 cut(s) 162, 673, 862, 889, 1026, 1370, 1387, 1427
TaqI TCGA 4 cut(s) 117, 516, 621, 973
TasI AATT 9 cut(s) 262, 332, 609, 727, 837, 1112, 1321, 1584, 1604
TatI WGTACW 3 cut(s) 655, 904, 1244
TauI GCSGC 2 cut(s) 551, 725
TfiI GAWTC 3 cut(s) 409, 704, 1169
Tru1I TTAA 5 cut(s) 389, 555, 612, 1235, 1365
Tru9I TTAA 5 cut(s) 389, 555, 612, 1235, 1365
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 2 cut(s) 201, 1539
TseI GCWGC 2 cut(s) 571, 740
Tsp45I GTSAC 2 cut(s) 201, 1539
TspDTI ATGAA 6 cut(s) 788, 933, 1161, 1412, 1467, 1617
TspGWI ACGGA 2 cut(s) 35, 103
TspRI CASTG 1 cut(s) 346
Tth111I GACNNNGTC 1 cut(s) 943
VneI GTGCAC 1 cut(s) 1209
VpaK11BI GGWCC 3 cut(s) 241, 426, 1016
VspI ATTAAT 1 cut(s) 612
XapI RAATTY 2 cut(s) 727, 1321
XcmI CCANNNNNNNNNTGG 2 cut(s) 133, 938
XmiI GTMKAC 1 cut(s) 683
XmnI GAANNNNTTC 4 cut(s) 753, 774, 795, 816
XspI CTAG 3 cut(s) 585, 1125, 1302
ZrmI AGTACT 1 cut(s) 1246
Zsp2I ATGCAT 1 cut(s) 1551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.