Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006274

Physical Location & Seq

Genomic Coordinates Reverse (-)

2558681 .. 2560325

Gene Structure 1645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g03450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGAAATCCCGATGGATGTGATAAAGCAGGTGCAGATCTCGCTTCGGAAAGAAGCGAACATGTCGTCCTACGACCCAGACGACACGCCGTTGCCCAATCTGCCTTCGGTCGAAGAAACCCTGGCGGAGTTGGATCCATCACCGCCGTACCTGAGGTGCAAGCATTGCAAAGGGCGGCTGCTGAGGGGCGTTCAGACGCTGACCTGCGTCTTTTGCGGCAGAGAACTCTGCAAGGACCTGCCTCCTGACCCCGTCAATTTCCGGGATACTTTTGGGTACCGGTGGCTGCTCCAGTCCCTGAGCTTAAGTGGATCGGAGATAGTGGATTTACCTATTGGAGCAAATGAATTAAACAGAGGACAGACTGCACGGAAGGATGAGTTAAGTCTGTCTGATCTCTTAAATCTTGAAATAAAATGGACCTCTAGGCCAGAGAAAATTGAGACTGATCTCTCAAATGAGAACCCCAATCTACCCAAATTACCAGATTTGGCTGGAGTCAATCTCGACAACTTTTTCTTTGAAGGAAACAAAGACCGTGCTTTGGGTAGTTCTGAAGGGCTGTTCGGGTCTAACACACAGATTGTCAGTAAAGAGAGTTTCCAAGTTCATGAAACTCTTAGTTTGTTTCAGAATGTAAAGCCTTTTGAGACAGTTGTGCAGACTACTGAAGGAGAGGGTGGTGATTCTGGTTGGGCCGCAAGTTTTCAGTTTGCTCTTCTGAAACCCTTCCTCGAGCTTCTGAAAACCTTCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

253

Amino Acids

28.18

Weight (kDa)

4.73

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05087 AT1G05087 AT1G05090 AT4G20720 AT4G20720
fragaria_vesca	FvH4_6g42760 FvH4_6g42760
malus_domestica	MD09G1071600.v1.1 MD17G1100100.v1.1 MD17G1100200.v1.1 MD17G1100500.v1.1
prunus_persica	Prupe.3G214000_v2.0.a1 Prupe.3G214000_v2.0.a1
pyrus_communis	pycom09g03450 pycom17g09500 pycom17g09530
rosa_chinensis	RchiOBHm_Chr2g0158651
rosa_laevigata	RLG00000021103
rosa_multiflora	Rmu_co8052378.1_g000001 Rmu_sc0004188.1_g000013
rosa_roxburghii	Rroxscaffold_2G00091140
rosa_rugosa	Rorug02G0471100
rosa_samantha	Rh2AG536900 Rh2BG550100 Rh2CG520600 Rh2DG559700
rosa_wichuraiana	Rw2G044450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	19
Acc36I	ACCTGC	3 cut(s)	19, 212, 246
Acc65I	GGTACC	1 cut(s)	276
AccB1I	GGYRCC	1 cut(s)	276
AciI	CCGC	5 cut(s)	125, 143, 175, 216, 699
AclWI	GGATC	3 cut(s)	128, 141, 319
AcuI	CTGAAG	2 cut(s)	576, 690
AfaI	GTAC	2 cut(s)	149, 278
AfiI	CCNNNNNNNGG	1 cut(s)	544
AflII	CTTAAG	1 cut(s)	304
AflIII	ACRYGT	1 cut(s)	60
AgeI	ACCGGT	1 cut(s)	279
AgsI	TTSAA	2 cut(s)	410, 524
AjnI	CCWGG	1 cut(s)	120
AloI	GAACNNNNNNTCC	2 cut(s)	50, 82
AluBI	AGCT	2 cut(s)	303, 739
AluI	AGCT	2 cut(s)	303, 739
Alw26I	GTCTC	2 cut(s)	437, 644
AlwI	GGATC	3 cut(s)	128, 141, 319
AlwNI	CAGNNNCTG	2 cut(s)	199, 298
Ama87I	CYCGRG	1 cut(s)	734
AoxI	GGCC	2 cut(s)	428, 696
ApeKI	GCWGC	2 cut(s)	178, 286
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AsiGI	ACCGGT	1 cut(s)	279
Asp700I	GAANNNNTTC	2 cut(s)	728, 749
Asp718I	GGTACC	1 cut(s)	276
AspS9I	GGNCC	3 cut(s)	235, 420, 696
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	2 cut(s)	132, 695
AvaI	CYCGRG	1 cut(s)	734
AvaII	GGWCC	2 cut(s)	235, 420
AxyI	CCTNAGG	1 cut(s)	152
BaeI	ACNNNNGTAYC	2 cut(s)	131, 164
BamHI	GGATCC	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	276
BbvCI	CCTCAGC	1 cut(s)	182
BbvI	GCAGC	2 cut(s)	165, 273
BccI	CCATC	2 cut(s)	7, 145
BceAI	ACGGC	2 cut(s)	73, 130
BciT130I	CCWGG	1 cut(s)	122
BciVI	GTATCC	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	2 cut(s)	437, 644
BfaI	CTAG	1 cut(s)	426
BfrI	CTTAAG	1 cut(s)	304
BfuAI	ACCTGC	3 cut(s)	19, 212, 246
BfuI	GTATCC	1 cut(s)	259
BglII	AGATCT	1 cut(s)	36
BisI	GCNGC	5 cut(s)	176, 179, 217, 287, 699
BlsI	GCNGC	5 cut(s)	177, 180, 218, 288, 700
Bme1390I	CCNGG	2 cut(s)	122, 263
Bme18I	GGWCC	2 cut(s)	235, 420
BmeT110I	CYCGRG	1 cut(s)	734
BmgT120I	GGNCC	3 cut(s)	235, 420, 696
BmiI	GGNNCC	2 cut(s)	135, 278
BmrFI	CCNGG	2 cut(s)	122, 263
BoxI	GACNNNNGTC	1 cut(s)	206
BplI	GAGNNNNNCTC	2 cut(s)	489, 521
BpmI	CTGGAG	2 cut(s)	275, 516
Bpu10I	CCTNAGC	2 cut(s)	182, 299
BpuMI	CCSGG	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	544
Bse118I	RCCGGY	1 cut(s)	279
Bse1I	ACTGG	1 cut(s)	292
Bse21I	CCTNAGG	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	2 cut(s)	22, 382
BseLI	CCNNNNNNNGG	1 cut(s)	544
BseMI	GCAATG	1 cut(s)	163
BseMII	CTCAG	3 cut(s)	143, 173, 290
BseNI	ACTGG	1 cut(s)	292
BseXI	GCAGC	2 cut(s)	165, 273
BsgI	GTGCAG	3 cut(s)	53, 351, 680
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	430, 698
BshNI	GGYRCC	1 cut(s)	276
BshTI	ACCGGT	1 cut(s)	279
BsiEI	CGRYCG	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	734
BsiSI	CCGG	2 cut(s)	262, 280
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	544
BsmAI	GTCTC	2 cut(s)	437, 644
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	2 cut(s)	430, 698
BsoBI	CYCGRG	1 cut(s)	734
Bsp143I	GATC	5 cut(s)	36, 133, 311, 394, 448
BspACI	CCGC	5 cut(s)	125, 143, 175, 216, 699
BspANI	GGCC	2 cut(s)	430, 698
BspCNI	CTCAG	3 cut(s)	144, 174, 291
BspHI	TCATGA	1 cut(s)	610
BspLI	GGNNCC	2 cut(s)	135, 278
BspMI	ACCTGC	3 cut(s)	19, 212, 246
BspPI	GGATC	3 cut(s)	128, 141, 319
BspQI	GCTCTTC	1 cut(s)	723
BspT107I	GGYRCC	1 cut(s)	276
BspTI	CTTAAG	1 cut(s)	304
BsrDI	GCAATG	1 cut(s)	163
BsrFI	RCCGGY	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	292
BssAI	RCCGGY	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	5 cut(s)	36, 133, 311, 394, 448
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	2 cut(s)	539, 655
Bst6I	CTCTTC	1 cut(s)	723
BstAFI	CTTAAG	1 cut(s)	304
BstAPI	GCANNNNNTGC	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	4 cut(s)	152, 182, 299, 620
BstF5I	GGATG	2 cut(s)	22, 382
BstKTI	GATC	5 cut(s)	39, 136, 314, 397, 451
BstMAI	GTCTC	2 cut(s)	437, 644
BstMBI	GATC	5 cut(s)	36, 133, 311, 394, 448
BstMCI	CGRYCG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 100, 165, 213
BstNI	CCWGG	1 cut(s)	122
BstNSI	RCATGY	1 cut(s)	64
BstPAI	GACNNNNGTC	1 cut(s)	206
BstSCI	CCNGG	2 cut(s)	120, 261
BstV1I	GCAGC	2 cut(s)	165, 273
BstX2I	RGATCY	2 cut(s)	36, 133
BstYI	RGATCY	2 cut(s)	36, 133
Bsu36I	CCTNAGG	1 cut(s)	152
BsuI	GTATCC	1 cut(s)	259
BsuRI	GGCC	2 cut(s)	430, 698
BtsCI	GGATG	2 cut(s)	22, 382
BveI	ACCTGC	3 cut(s)	19, 212, 246
Cac8I	GCNNGC	1 cut(s)	161
CaiI	CAGNNNCTG	2 cut(s)	199, 298
CciI	TCATGA	1 cut(s)	610
Cfr10I	RCCGGY	1 cut(s)	279
Cfr13I	GGNCC	3 cut(s)	235, 420, 696
CseI	GACGC	2 cut(s)	196, 205
Csp6I	GTAC	2 cut(s)	148, 277
CspAI	ACCGGT	1 cut(s)	279
CviAII	CATG	2 cut(s)	61, 611
CviJI	RGCY	9 cut(s)	178, 286, 303, 430, 494, 562, 643, 698, 739
CviKI_1	RGCY	9 cut(s)	178, 286, 303, 430, 494, 562, 643, 698, 739
CviQI	GTAC	2 cut(s)	148, 277
DdeI	CTNAG	4 cut(s)	152, 182, 299, 620
DpnI	GATC	5 cut(s)	38, 135, 313, 396, 450
DpnII	GATC	5 cut(s)	36, 133, 311, 394, 448
Eam1104I	CTCTTC	1 cut(s)	723
EarI	CTCTTC	1 cut(s)	723
EciI	GGCGGA	1 cut(s)	140
Eco47I	GGWCC	2 cut(s)	235, 420
Eco57I	CTGAAG	2 cut(s)	576, 690
Eco81I	CCTNAGG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	734
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	120
FaeI	CATG	2 cut(s)	64, 614
FaiI	YATR	2 cut(s)	62, 612
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	2 cut(s)	60, 610
Fnu4HI	GCNGC	5 cut(s)	176, 179, 217, 287, 699
FokI	GGATG	2 cut(s)	29, 389
Fsp4HI	GCNGC	5 cut(s)	176, 179, 217, 287, 699
FspBI	CTAG	1 cut(s)	426
GluI	GCNGC	5 cut(s)	176, 179, 217, 287, 699
GsuI	CTGGAG	2 cut(s)	275, 516
HaeIII	GGCC	2 cut(s)	430, 698
HapII	CCGG	2 cut(s)	262, 280
HgaI	GACGC	2 cut(s)	196, 205
Hin1II	CATG	2 cut(s)	64, 614
HinfI	GANTC	2 cut(s)	498, 686
HpaII	CCGG	2 cut(s)	262, 280
HphI	GGTGA	2 cut(s)	132, 695
Hpy188I	TCNGA	8 cut(s)	48, 195, 316, 394, 556, 633, 723, 744
Hpy188III	TCNNGA	5 cut(s)	10, 245, 407, 506, 611
HpyAV	CCTTC	6 cut(s)	114, 367, 518, 551, 665, 739
HpyCH4III	ACNGT	2 cut(s)	539, 655
HpyCH4V	TGCA	6 cut(s)	34, 159, 168, 231, 368, 661
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 100, 165, 213
HpyF3I	CTNAG	4 cut(s)	152, 182, 299, 620
Hsp92II	CATG	2 cut(s)	64, 614
KpnI	GGTACC	1 cut(s)	280
Kzo9I	GATC	5 cut(s)	36, 133, 311, 394, 448
LguI	GCTCTTC	1 cut(s)	723
LmnI	GCTCC	2 cut(s)	294, 338
Lsp1109I	GCAGC	2 cut(s)	165, 273
MaeI	CTAG	1 cut(s)	426
MalI	GATC	5 cut(s)	38, 135, 313, 396, 450
MboI	GATC	5 cut(s)	36, 133, 311, 394, 448
MboII	GAAGA	2 cut(s)	125, 710
MflI	RGATCY	2 cut(s)	36, 133
MluCI	AATT	4 cut(s)	256, 347, 438, 479
MlyI	GAGTC	1 cut(s)	507
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	7 cut(s)	147, 177, 252, 350, 433, 670, 743
MroXI	GAANNNNTTC	2 cut(s)	728, 749
MseI	TTAA	4 cut(s)	305, 350, 383, 401
MspCI	CTTAAG	1 cut(s)	304
MspI	CCGG	2 cut(s)	262, 280
MspR9I	CCNGG	2 cut(s)	122, 263
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	4 cut(s)	40, 100, 165, 213
NciI	CCSGG	1 cut(s)	263
NdeII	GATC	5 cut(s)	36, 133, 311, 394, 448
NlaIII	CATG	2 cut(s)	64, 614
NlaIV	GGNNCC	2 cut(s)	135, 278
NspI	RCATGY	1 cut(s)	64
PaeR7I	CTCGAG	1 cut(s)	734
PagI	TCATGA	1 cut(s)	610
PaqCI	CACCTGC	1 cut(s)	19
PciI	ACATGT	1 cut(s)	60
PciSI	GCTCTTC	1 cut(s)	723
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PdmI	GAANNNNTTC	2 cut(s)	728, 749
PfeI	GAWTC	1 cut(s)	686
PflFI	GACNNNGTC	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	261
PinAI	ACCGGT	1 cut(s)	279
PkrI	GCNGC	5 cut(s)	177, 180, 218, 288, 700
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
PpuMI	RGGWCCY	1 cut(s)	235
PscI	ACATGT	1 cut(s)	60
PshAI	GACNNNNGTC	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	135, 278
PspPI	GGNCC	3 cut(s)	235, 420, 696
PspPPI	RGGWCCY	1 cut(s)	235
PspXI	VCTCGAGB	1 cut(s)	734
PstNI	CAGNNNCTG	2 cut(s)	199, 298
PsuI	RGATCY	2 cut(s)	36, 133
PsyI	GACNNNGTC	1 cut(s)	251
RsaI	GTAC	2 cut(s)	149, 278
RsaNI	GTAC	2 cut(s)	148, 277
SapI	GCTCTTC	1 cut(s)	723
SaqAI	TTAA	4 cut(s)	305, 350, 383, 401
SatI	GCNGC	5 cut(s)	176, 179, 217, 287, 699
Sau3AI	GATC	5 cut(s)	36, 133, 311, 394, 448
Sau96I	GGNCC	3 cut(s)	235, 420, 696
SchI	GAGTC	1 cut(s)	507
ScrFI	CCNGG	2 cut(s)	122, 263
Sfr274I	CTCGAG	1 cut(s)	734
SinI	GGWCC	2 cut(s)	235, 420
SlaI	CTCGAG	1 cut(s)	734
SmlI	CTYRAG	2 cut(s)	304, 734
SmoI	CTYRAG	2 cut(s)	304, 734
Sse9I	AATT	4 cut(s)	256, 347, 438, 479
SsiI	CCGC	5 cut(s)	125, 143, 175, 216, 699
SspMI	CTAG	1 cut(s)	426
StyD4I	CCNGG	2 cut(s)	120, 261
TaaI	ACNGT	2 cut(s)	539, 655
TaqI	TCGA	3 cut(s)	111, 507, 735
TaqII	GACCGA	1 cut(s)	97
TasI	AATT	4 cut(s)	256, 347, 438, 479
TauI	GCSGC	3 cut(s)	178, 219, 701
TfiI	GAWTC	1 cut(s)	686
Tru1I	TTAA	4 cut(s)	305, 350, 383, 401
Tru9I	TTAA	4 cut(s)	305, 350, 383, 401
TseI	GCWGC	2 cut(s)	178, 286
TspDTI	ATGAA	3 cut(s)	360, 599, 627
TspGWI	ACGGA	1 cut(s)	385
Tth111I	GACNNNGTC	1 cut(s)	251
Vha464I	CTTAAG	1 cut(s)	304
VpaK11BI	GGWCC	2 cut(s)	235, 420
XceI	RCATGY	1 cut(s)	64
XhoI	CTCGAG	1 cut(s)	734
XmnI	GAANNNNTTC	2 cut(s)	728, 749
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.