AT1G05575

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006619
Physical Location & Seq
Reverse (-)
1661550 .. 1662259
710 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G05575.1

Sequence Viewer

Length: 270 bp
ATGGAAGGAAGCTTTGAAGGCATGTTAATGAAAGTGAGCATTTTTGCTCTGATTCAAGGGCTTGTGTATCTCATACTCAGCAAATCTTCGAGCGTTTTCTCTACGTCAAAGACGATGAAGAGAGCTTACAGTTTCCGGTCAGCGAGATCCATCAGTATCCGCAGGATTCTAGCTGTTCTTCAAGACATGCCAGCAGGCGGCGAGATGTCTCCTTCTGCCATGGGACCTTCTCTTGCTTCTTCTCTATCCTCACCATCGGAAATCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.53

Weight (kDa)

9.99

Isoelectric Point (pI)

80.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 160, 198
AclWI GGATC 1 cut(s) 141
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 3 cut(s) 17, 56, 182
AluBI AGCT 3 cut(s) 12, 125, 173
AluI AGCT 3 cut(s) 12, 125, 173
Alw26I GTCTC 1 cut(s) 213
AlwI GGATC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 243
AvaII GGWCC 1 cut(s) 224
BarI GAAGNNNNNNTAC 2 cut(s) 110, 142
BccI CCATC 2 cut(s) 158, 262
BciVI GTATCC 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 213
BfaI CTAG 1 cut(s) 170
BfuI GTATCC 1 cut(s) 167
BisI GCNGC 1 cut(s) 199
BlsI GCNGC 1 cut(s) 200
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 219
BsaWI WCCGGW 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMII CTCAG 1 cut(s) 91
BsiSI CCGG 1 cut(s) 136
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 237
Bsp143I GATC 1 cut(s) 146
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 2 cut(s) 160, 198
BspCNI CTCAG 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 225
BspPI GGATC 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 131
Bst6I CTCTTC 1 cut(s) 113
BstC8I GCNNGC 2 cut(s) 192, 196
BstDEI CTNAG 1 cut(s) 77
BstDSI CCRYGG 1 cut(s) 219
BstKTI GATC 1 cut(s) 149
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 1 cut(s) 146
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstNSI RCATGY 2 cut(s) 25, 190
BstX2I RGATCY 1 cut(s) 146
BstYI RGATCY 1 cut(s) 146
BsuI GTATCC 1 cut(s) 167
BtgI CCRYGG 1 cut(s) 219
Cac8I GCNNGC 2 cut(s) 192, 196
Cfr13I GGNCC 1 cut(s) 224
CviAII CATG 3 cut(s) 22, 187, 220
CviJI RGCY 4 cut(s) 12, 61, 125, 173
CviKI_1 RGCY 4 cut(s) 12, 61, 125, 173
DdeI CTNAG 1 cut(s) 77
DpnI GATC 1 cut(s) 148
DpnII GATC 1 cut(s) 146
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco130I CCWWGG 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 3 cut(s) 25, 190, 223
FaiI YATR 4 cut(s) 23, 74, 188, 221
FaqI GGGAC 1 cut(s) 237
FatI CATG 3 cut(s) 21, 186, 219
Fnu4HI GCNGC 1 cut(s) 199
Fsp4HI GCNGC 1 cut(s) 199
FspBI CTAG 1 cut(s) 170
GluI GCNGC 1 cut(s) 199
HapII CCGG 1 cut(s) 136
Hin1II CATG 3 cut(s) 25, 190, 223
HindIII AAGCTT 1 cut(s) 10
HinfI GANTC 2 cut(s) 52, 166
HpaII CCGG 1 cut(s) 136
HphI GGTGA 1 cut(s) 243
Hpy188I TCNGA 2 cut(s) 51, 259
Hpy188III TCNNGA 1 cut(s) 182
HpyAV CCTTC 3 cut(s) 11, 222, 237
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 1 cut(s) 104
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpyF3I CTNAG 1 cut(s) 77
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 3 cut(s) 25, 190, 223
Kzo9I GATC 1 cut(s) 146
LpnPI CCDG 4 cut(s) 148, 149, 180, 204
MaeI CTAG 1 cut(s) 170
MaeII ACGT 1 cut(s) 104
MalI GATC 1 cut(s) 148
MboI GATC 1 cut(s) 146
MboII GAAGA 4 cut(s) 78, 130, 170, 231
MflI RGATCY 1 cut(s) 146
MnlI CCTC 1 cut(s) 259
MseI TTAA 1 cut(s) 26
MslI CAYNNNNRTG 1 cut(s) 26
MspI CCGG 1 cut(s) 136
MwoI GCNNNNNNNGC 1 cut(s) 18
NcoI CCATGG 1 cut(s) 219
NdeII GATC 1 cut(s) 146
NlaIII CATG 3 cut(s) 25, 190, 223
NlaIV GGNNCC 1 cut(s) 225
NspI RCATGY 2 cut(s) 25, 190
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PfeI GAWTC 2 cut(s) 52, 166
PkrI GCNGC 1 cut(s) 200
PpuMI RGGWCCY 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 1 cut(s) 224
PspPPI RGGWCCY 1 cut(s) 224
PsuI RGATCY 1 cut(s) 146
RseI CAYNNNNRTG 1 cut(s) 26
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 1 cut(s) 199
Sau3AI GATC 1 cut(s) 146
Sau96I GGNCC 1 cut(s) 224
SetI ASST 5 cut(s) 14, 107, 127, 175, 229
SinI GGWCC 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 26
SsiI CCGC 2 cut(s) 160, 198
SspMI CTAG 1 cut(s) 170
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 1 cut(s) 107
TaqI TCGA 1 cut(s) 89
TauI GCSGC 1 cut(s) 201
TfiI GAWTC 2 cut(s) 52, 166
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TspDTI ATGAA 2 cut(s) 44, 131
VpaK11BI GGWCC 1 cut(s) 224
XceI RCATGY 2 cut(s) 25, 190
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.