Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006619

Physical Location & Seq

Genomic Coordinates Reverse (-)

1191890 .. 1192138

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1015000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGTGGTTGAGATCACTTCCTTGGCGTTGGTAAATAACACATTGATGAAGGTGGCTATGTTTGTGGTAGTTCAAGCTTTGGTTTATCTCATCCTTTCCAGTTCATCCAGACTCTTCTCCAAGAACAAATTGAGGTCATTCAACAGCTTTCAGCCCCTTCGTTCTGCTAGCATTAACCGGATTCTGGCTTTCATCTCCGACTTGCCAACAGGCAGTACTGCTGCTGATCAGCCATCACCACGTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

83

Amino Acids

8.97

Weight (kDa)

10.95

Isoelectric Point (pI)

52.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05575 AT2G31945
fragaria_vesca	FvH4_3g44500 FvH4_7g00010
malus_domestica	MD00G1055400.v1.1 MD02G1319500.v1.1 MD03G1011900.v1.1 MD11G1015000.v1.1
prunus_persica	Prupe.2G002500_v2.0.a1 Prupe.6G012500_v2.0.a1
pyrus_communis	pycom11g01030
rosa_chinensis	RchiOBHm_Chr1g0313231 RchiOBHm_Chr5g0081201
rosa_laevigata	RLG00000036918
rosa_multiflora	Rmu_sc0003219.1_g000019
rosa_roxburghii	Rroxscaffold_1G00002270 Rroxscaffold_4G00332320
rosa_rugosa	Rorug05G0474400 RorugPtG0001900.1
rosa_samantha	Rh1AG001900 Rh1CG006400 Rh1DG001800 Rh1DG050200 Rh5DG560600
rosa_wichuraiana	Rw1G000100 Rw5G048930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	217, 244
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgsI	TTSAA	2 cut(s)	74, 142
AluBI	AGCT	2 cut(s)	77, 147
AluI	AGCT	2 cut(s)	77, 147
ApeKI	GCWGC	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	228
AsuNHI	GCTAGC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	1 cut(s)	241
BclI	TGATCA	1 cut(s)	226
BfaI	CTAG	1 cut(s)	168
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
BmcAI	AGTACT	1 cut(s)	217
BmtI	GCTAGC	1 cut(s)	171
BsaAI	YACGTR	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	2 cut(s)	90, 104
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseNI	ACTGG	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	12, 226
BspOI	GCTAGC	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	2 cut(s)	12, 226
BssT1I	CCWWGG	1 cut(s)	21
Bst6I	CTCTTC	1 cut(s)	119
BstBAI	YACGTR	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	169
BstF5I	GGATG	2 cut(s)	90, 104
BstKTI	GATC	2 cut(s)	15, 229
BstMBI	GATC	2 cut(s)	12, 226
BstV1I	GCAGC	1 cut(s)	208
BtsCI	GGATG	2 cut(s)	90, 104
Cac8I	GCNNGC	1 cut(s)	169
Csp6I	GTAC	2 cut(s)	216, 243
CviAII	CATG	1 cut(s)	246
CviJI	RGCY	6 cut(s)	56, 77, 147, 154, 188, 232
CviKI_1	RGCY	6 cut(s)	56, 77, 147, 154, 188, 232
CviQI	GTAC	2 cut(s)	216, 243
DpnI	GATC	2 cut(s)	14, 228
DpnII	GATC	2 cut(s)	12, 226
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	1 cut(s)	249
FaiI	YATR	2 cut(s)	59, 247
FatI	CATG	1 cut(s)	245
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	2 cut(s)	77, 91
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	1 cut(s)	222
HapII	CCGG	1 cut(s)	178
Hin1II	CATG	1 cut(s)	249
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	2 cut(s)	111, 181
HpaII	CCGG	1 cut(s)	178
HphI	GGTGA	1 cut(s)	228
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	1 cut(s)	108
HpyAV	CCTTC	2 cut(s)	43, 167
HpyCH4IV	ACGT	1 cut(s)	241
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	1 cut(s)	249
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	12, 226
LpnPI	CCDG	5 cut(s)	112, 121, 170, 191, 195
Lsp1109I	GCAGC	1 cut(s)	208
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	1 cut(s)	241
MalI	GATC	2 cut(s)	14, 228
MboI	GATC	2 cut(s)	12, 226
MboII	GAAGA	1 cut(s)	106
MluCI	AATT	1 cut(s)	128
MlyI	GAGTC	1 cut(s)	105
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	1 cut(s)	126
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	2 cut(s)	44, 244
MspI	CCGG	1 cut(s)	178
NdeII	GATC	2 cut(s)	12, 226
NheI	GCTAGC	1 cut(s)	167
NlaIII	CATG	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
Ppu21I	YACGTR	1 cut(s)	242
RsaI	GTAC	2 cut(s)	217, 244
RsaNI	GTAC	2 cut(s)	216, 243
RseI	CAYNNNNRTG	2 cut(s)	44, 244
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	2 cut(s)	12, 226
ScaI	AGTACT	1 cut(s)	217
SchI	GAGTC	1 cut(s)	105
SetI	ASST	5 cut(s)	54, 79, 137, 149, 244
SmiMI	CAYNNNNRTG	2 cut(s)	44, 244
Sse9I	AATT	1 cut(s)	128
SspMI	CTAG	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	21
TaiI	ACGT	1 cut(s)	244
TasI	AATT	1 cut(s)	128
TatI	WGTACW	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	3 cut(s)	62, 93, 181
XspI	CTAG	1 cut(s)	168
ZrmI	AGTACT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.