Rroxscaffold_1G00002270

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
2711622 .. 2711861
240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00002270.1

Sequence Viewer

Length: 240 bp
ATGGCGCTAGAGTCGATTTCGCTGATGGATAGCTTAATGAAGGTGGCGATGTTTGTGGTTGTTCAAGCTTTGGTTTATGTAATCCTTTCCAGTTCATCCAATCTCTTCTCTGAGAACAAACTCAGGTCATTCAACAACAGCTTCAAACTTGCTCGTTCTGCTAGCATCAACGGTATTCTCGCCGCCATCTCTGACTTACCGACTGGATCTACTGCTACCGAGCAGGACTCACCATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.44

Weight (kDa)

4.99

Isoelectric Point (pI)

55.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 183
AclWI GGATC 1 cut(s) 214
AgsI TTSAA 3 cut(s) 65, 133, 145
AluBI AGCT 3 cut(s) 33, 68, 141
AluI AGCT 3 cut(s) 33, 68, 141
AlwI GGATC 1 cut(s) 214
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 222
AsuNHI GCTAGC 1 cut(s) 161
BccI CCATC 2 cut(s) 19, 194
BfaI CTAG 2 cut(s) 8, 162
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
BmsI GCATC 1 cut(s) 174
BmtI GCTAGC 1 cut(s) 165
BplI GAGNNNNNCTC 1 cut(s) 212
Bse1I ACTGG 2 cut(s) 90, 208
BseGI GGATG 1 cut(s) 95
BseMII CTCAG 2 cut(s) 102, 136
BseNI ACTGG 2 cut(s) 90, 208
Bsp143I GATC 1 cut(s) 206
BspACI CCGC 1 cut(s) 183
BspCNI CTCAG 2 cut(s) 103, 135
BspOI GCTAGC 1 cut(s) 165
BspPI GGATC 1 cut(s) 214
BsrI ACTGG 2 cut(s) 90, 208
BssMI GATC 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 163
BstDEI CTNAG 2 cut(s) 111, 122
BstF5I GGATG 1 cut(s) 95
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 209
BstMBI GATC 1 cut(s) 206
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
BtgZI GCGATG 1 cut(s) 62
BtsCI GGATG 1 cut(s) 95
Cac8I GCNNGC 1 cut(s) 163
CfoI GCGC 1 cut(s) 7
CviJI RGCY 3 cut(s) 33, 68, 141
CviKI_1 RGCY 3 cut(s) 33, 68, 141
DdeI CTNAG 2 cut(s) 111, 122
DpnI GATC 1 cut(s) 208
DpnII GATC 1 cut(s) 206
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
FaiI YATR 2 cut(s) 78, 238
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 1 cut(s) 82
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 2 cut(s) 8, 162
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 183
HaeII RGCGCY 1 cut(s) 8
HhaI GCGC 1 cut(s) 7
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 66
HinfI GANTC 2 cut(s) 11, 227
HphI GGTGA 1 cut(s) 222
Hpy188I TCNGA 2 cut(s) 112, 193
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 2 cut(s) 111, 122
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 1 cut(s) 206
LpnPI CCDG 4 cut(s) 103, 109, 189, 209
LweI GCATC 1 cut(s) 174
MaeI CTAG 2 cut(s) 8, 162
MalI GATC 1 cut(s) 208
MboI GATC 1 cut(s) 206
MboII GAAGA 1 cut(s) 97
MflI RGATCY 1 cut(s) 206
MlyI GAGTC 2 cut(s) 20, 221
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 235
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 1 cut(s) 206
NheI GCTAGC 1 cut(s) 161
PkrI GCNGC 1 cut(s) 184
PleI GAGTC 2 cut(s) 19, 221
PpsI GAGTC 2 cut(s) 19, 221
PsuI RGATCY 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 235
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 1 cut(s) 206
SchI GAGTC 2 cut(s) 20, 221
SetI ASST 5 cut(s) 35, 45, 70, 128, 143
SfaNI GCATC 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 235
SsiI CCGC 1 cut(s) 183
SspMI CTAG 2 cut(s) 8, 162
TaaI ACNGT 1 cut(s) 173
TaqI TCGA 1 cut(s) 14
TauI GCSGC 1 cut(s) 185
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TspDTI ATGAA 2 cut(s) 53, 84
XspI CTAG 2 cut(s) 8, 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.