Rroxscaffold_4G00332320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0006619
Physical Location & Seq
Reverse (-)
66454415 .. 66455317
903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00332320.1

Sequence Viewer

Length: 294 bp
ATGGAATTGAGCTTAGCAGATGCGTTGGTGAAGGTAGCCCTGTTTTTCTTGGTTCAGGGTTTGGTGTATCTCATCCTTTCCAAGTCATCAAACATCTTCTCCTCCAAATCCAACATGACGAGATCCCATAGCTTCAAACCAGCTCGCTCTGTAAGTATTCGTCGGATGTTTGCCACTCTTGCCGACTTACCCGCCGGTGGTGAGCTCTCTCCTTCATCCAGGGACCTTCGTTCGCCCGATTACCAACAAAATTCAAACTCCAGCCTACATCTCAACGGAACAACTCCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.59

Weight (kDa)

9.98

Isoelectric Point (pI)

57.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 192
AclWI GGATC 1 cut(s) 117
AcsI RAATTY 1 cut(s) 250
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 2 cut(s) 136, 255
AjnI CCWGG 1 cut(s) 218
AluBI AGCT 4 cut(s) 12, 132, 143, 205
AluI AGCT 4 cut(s) 12, 132, 143, 205
Alw21I GWGCWC 1 cut(s) 207
AlwI GGATC 1 cut(s) 117
ApoI RAATTY 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 223
AsuHPI GGTGA 2 cut(s) 40, 212
AvaII GGWCC 1 cut(s) 223
BanII GRGCYC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 207
BciT130I CCWGG 1 cut(s) 220
BlpI GCTNAGC 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 220
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 224
BmrFI CCNGG 1 cut(s) 220
BmsI GCATC 1 cut(s) 10
BpmI CTGGAG 1 cut(s) 244
Bpu1102I GCTNAGC 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 219
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse118I RCCGGY 1 cut(s) 194
BseBI CCWGG 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 3 cut(s) 72, 171, 215
BseLI CCNNNNNNNGG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 1 cut(s) 195
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 122
Bsp1720I GCTNAGC 1 cut(s) 13
BspACI CCGC 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 224
BspPI GGATC 1 cut(s) 117
BsrFI RCCGGY 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 1 cut(s) 122
Bst2UI CCWGG 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 13
BstF5I GGATG 3 cut(s) 72, 171, 215
BstKTI GATC 1 cut(s) 125
BstMBI GATC 1 cut(s) 122
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 122
BstYI RGATCY 1 cut(s) 122
BtsCI GGATG 3 cut(s) 72, 171, 215
Cac8I GCNNGC 1 cut(s) 145
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 1 cut(s) 223
CviAII CATG 1 cut(s) 115
CviJI RGCY 6 cut(s) 12, 38, 132, 143, 205, 264
CviKI_1 RGCY 6 cut(s) 12, 38, 132, 143, 205, 264
DdeI CTNAG 1 cut(s) 13
DpnI GATC 1 cut(s) 124
DpnII GATC 1 cut(s) 122
Ecl136II GAGCTC 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 223
Eco53kI GAGCTC 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 218
EcoT38I GRGCYC 1 cut(s) 207
FaeI CATG 1 cut(s) 118
FaiI YATR 2 cut(s) 116, 129
FaqI GGGAC 1 cut(s) 236
FatI CATG 1 cut(s) 114
FauI CCCGC 1 cut(s) 199
FokI GGATG 3 cut(s) 59, 178, 202
FriOI GRGCYC 1 cut(s) 207
GsuI CTGGAG 1 cut(s) 244
HapII CCGG 1 cut(s) 195
Hin1II CATG 1 cut(s) 118
HpaII CCGG 1 cut(s) 195
HphI GGTGA 2 cut(s) 40, 212
Hpy188I TCNGA 1 cut(s) 165
Hpy99I CGWCG 1 cut(s) 165
HpyAV CCTTC 3 cut(s) 25, 222, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 13
Hsp92II CATG 1 cut(s) 118
Kzo9I GATC 1 cut(s) 122
LpnPI CCDG 7 cut(s) 41, 53, 153, 205, 208, 232, 274
LweI GCATC 1 cut(s) 10
MalI GATC 1 cut(s) 124
MboI GATC 1 cut(s) 122
MboII GAAGA 1 cut(s) 88
MflI RGATCY 1 cut(s) 122
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 3 cut(s) 5, 250, 289
MmeI TCCRAC 2 cut(s) 135, 143
MnlI CCTC 1 cut(s) 112
MseI TTAA 1 cut(s) 292
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 220
MvaI CCWGG 1 cut(s) 220
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 1 cut(s) 122
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 1 cut(s) 224
PpuMI RGGWCCY 1 cut(s) 223
Psp124BI GAGCTC 1 cut(s) 207
Psp5II RGGWCCY 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 218
PspGI CCWGG 1 cut(s) 218
PspN4I GGNNCC 1 cut(s) 224
PspPI GGNCC 1 cut(s) 223
PspPPI RGGWCCY 1 cut(s) 223
PsuI RGATCY 1 cut(s) 122
SacI GAGCTC 1 cut(s) 207
SaqAI TTAA 1 cut(s) 292
Sau3AI GATC 1 cut(s) 122
Sau96I GGNCC 1 cut(s) 223
ScrFI CCNGG 1 cut(s) 220
SduI GDGCHC 1 cut(s) 207
SetI ASST 6 cut(s) 14, 36, 134, 145, 207, 228
SfaNI GCATC 1 cut(s) 10
SgrAI CRCCGGYG 1 cut(s) 194
SinI GGWCC 1 cut(s) 223
Sse9I AATT 3 cut(s) 5, 250, 289
SsiI CCGC 1 cut(s) 192
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 218
TasI AATT 3 cut(s) 5, 250, 289
Tru1I TTAA 1 cut(s) 292
Tru9I TTAA 1 cut(s) 292
TspDTI ATGAA 1 cut(s) 204
TspGWI ACGGA 1 cut(s) 291
VpaK11BI GGWCC 1 cut(s) 223
XapI RAATTY 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.