MD02G1319500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0006619
Physical Location & Seq
Reverse (-)
37385160 .. 37385483
324 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1319500.v1.1.491

Sequence Viewer

Length: 324 bp
ATGATGCTGATGATGATGGAAAGCTGCTTCGCAGATGTGCTGGTGAAGGTAGGCATGTTCATCCTTGTTCAGGCCTTGGTATATCTCATCCTTTCCAACTCATCCAATATCTTCTCCAAAACTACCAAGAGGTCCCACAGCTTCAAACCAGCTCGCTCTGTTAGTATTCGCCGGATGCTTGCTGCTCTTTCTGACTTACCCGCCGGCGGCGAGCTCTCTCCTTCAACAAACTCAACGGACATGAACACGATGATGATGCACTCCCCTAACAGCAAAAGTAGTAGCCAAGAAAACTCAACCGCTCGATTTTCCCAATTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.77

Weight (kDa)

9.74

Isoelectric Point (pI)

62.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 302
AciI CCGC 3 cut(s) 201, 207, 300
AfiI CCNNNNNNNGG 2 cut(s) 70, 206
AgsI TTSAA 2 cut(s) 145, 225
AluBI AGCT 4 cut(s) 24, 141, 152, 214
AluI AGCT 4 cut(s) 24, 141, 152, 214
Alw21I GWGCWC 1 cut(s) 216
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 2 cut(s) 24, 182
AspS9I GGNCC 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 55
AvaII GGWCC 1 cut(s) 132
BanII GRGCYC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 11, 169
BccI CCATC 1 cut(s) 10
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BisI GCNGC 3 cut(s) 25, 183, 208
BlsI GCNGC 3 cut(s) 26, 184, 209
Bme18I GGWCC 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 134
BmsI GCATC 2 cut(s) 165, 246
BsaJI CCNNGG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 206
Bse118I RCCGGY 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 4 cut(s) 60, 87, 101, 180
BseLI CCNNNNNNNGG 2 cut(s) 70, 206
BseXI GCAGC 2 cut(s) 11, 169
BshFI GGCC 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 216
BsiSI CCGG 2 cut(s) 172, 204
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 2 cut(s) 70, 206
BsmFI GGGAC 1 cut(s) 118
BsnI GGCC 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 216
BspACI CCGC 3 cut(s) 201, 207, 300
BspANI GGCC 1 cut(s) 74
BspLI GGNNCC 1 cut(s) 134
BsrBI CCGCTC 1 cut(s) 302
BsrFI RCCGGY 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 75
BstC8I GCNNGC 4 cut(s) 154, 180, 205, 212
BstENI CCTNNNNNAGG 1 cut(s) 68
BstF5I GGATG 4 cut(s) 60, 87, 101, 180
BstNSI RCATGY 1 cut(s) 58
BstV1I GCAGC 2 cut(s) 11, 169
BsuRI GGCC 1 cut(s) 74
BtsCI GGATG 4 cut(s) 60, 87, 101, 180
Cac8I GCNNGC 4 cut(s) 154, 180, 205, 212
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 1 cut(s) 132
CviAII CATG 2 cut(s) 55, 241
CviJI RGCY 6 cut(s) 24, 74, 141, 152, 214, 285
CviKI_1 RGCY 6 cut(s) 24, 74, 141, 152, 214, 285
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 75
Eco147I AGGCCT 1 cut(s) 74
Eco24I GRGCYC 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 132
Eco53kI GAGCTC 1 cut(s) 214
EcoICRI GAGCTC 1 cut(s) 214
EcoNI CCTNNNNNAGG 1 cut(s) 68
EcoO109I RGGNCCY 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 75
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 2 cut(s) 58, 244
FaiI YATR 3 cut(s) 56, 82, 242
FaqI GGGAC 1 cut(s) 118
FatI CATG 2 cut(s) 54, 240
FauI CCCGC 1 cut(s) 208
Fnu4HI GCNGC 3 cut(s) 25, 183, 208
FokI GGATG 4 cut(s) 47, 74, 88, 187
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 3 cut(s) 25, 183, 208
GluI GCNGC 3 cut(s) 25, 183, 208
HaeIII GGCC 1 cut(s) 74
HapII CCGG 2 cut(s) 172, 204
Hin1II CATG 2 cut(s) 58, 244
HpaII CCGG 2 cut(s) 172, 204
HphI GGTGA 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 193
HpyAV CCTTC 2 cut(s) 40, 231
HpyCH4V TGCA 1 cut(s) 259
Hsp92II CATG 2 cut(s) 58, 244
KroI GCCGGC 1 cut(s) 203
KroNI GCCGGC 1 cut(s) 205
LpnPI CCDG 5 cut(s) 26, 56, 162, 185, 217
Lsp1109I GCAGC 2 cut(s) 11, 169
LweI GCATC 2 cut(s) 165, 246
MbiI CCGCTC 1 cut(s) 302
MboII GAAGA 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 2 cut(s) 314, 319
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 1 cut(s) 123
MreI CGCCGGCG 1 cut(s) 203
MroNI GCCGGC 1 cut(s) 203
MseI TTAA 2 cut(s) 317, 322
MslI CAYNNNNRTG 1 cut(s) 251
MspI CCGG 2 cut(s) 172, 204
NaeI GCCGGC 1 cut(s) 205
NgoMIV GCCGGC 1 cut(s) 203
NlaIII CATG 2 cut(s) 58, 244
NlaIV GGNNCC 1 cut(s) 134
NspI RCATGY 1 cut(s) 58
PceI AGGCCT 1 cut(s) 74
PdiI GCCGGC 1 cut(s) 205
PkrI GCNGC 3 cut(s) 26, 184, 209
PpuMI RGGWCCY 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 134
PspPI GGNCC 1 cut(s) 132
PspPPI RGGWCCY 1 cut(s) 132
RseI CAYNNNNRTG 1 cut(s) 251
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 2 cut(s) 317, 322
SatI GCNGC 3 cut(s) 25, 183, 208
Sau96I GGNCC 1 cut(s) 132
SduI GDGCHC 1 cut(s) 216
SetI ASST 6 cut(s) 26, 51, 134, 143, 154, 216
SfaNI GCATC 2 cut(s) 165, 246
SgrAI CRCCGGYG 1 cut(s) 203
SinI GGWCC 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 251
Sse9I AATT 2 cut(s) 314, 319
SseBI AGGCCT 1 cut(s) 74
SsiI CCGC 3 cut(s) 201, 207, 300
SstI GAGCTC 1 cut(s) 216
StuI AGGCCT 1 cut(s) 74
StyI CCWWGG 1 cut(s) 75
TaqI TCGA 1 cut(s) 304
TasI AATT 2 cut(s) 314, 319
TauI GCSGC 1 cut(s) 210
Tru1I TTAA 2 cut(s) 317, 322
Tru9I TTAA 2 cut(s) 317, 322
TseI GCWGC 2 cut(s) 24, 182
TspDTI ATGAA 2 cut(s) 49, 257
TspGWI ACGGA 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 132
XagI CCTNNNNNAGG 1 cut(s) 68
XceI RCATGY 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.