Prupe.2G002500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0006619
Physical Location & Seq
Forward (+)
321445 .. 322004
560 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G002500.1

Sequence Viewer

Length: 291 bp
ATGATGACGATTATGGAAAGCAGCATAGCAGATGTCTTGGTGAAGGTAGCCATGTTCATACTGATTCAGGGTTTGGTATATCTCATCCTTTCCAACTCATCAAACATCTTCTCCAAAACCACCAGGAGATCACATAGCTTCAAACCAGCTCGCTCTGTAAGCATCCGTCGGATACTTGCTGCTCTTGCCGACTTACCCGCCGGCGGTGAGCTCTCTCCTTCATCAAATTATTCAAGGGATAATTTGCAGTCTCCTCCTAGCCAGGAAAATGCAACGCCTCGATACTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.52

Weight (kDa)

9.98

Isoelectric Point (pI)

77.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 198, 204
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 2 cut(s) 142, 234
AjnI CCWGG 2 cut(s) 122, 261
AluBI AGCT 3 cut(s) 138, 149, 211
AluI AGCT 3 cut(s) 138, 149, 211
Alw21I GWGCWC 1 cut(s) 213
Alw26I GTCTC 1 cut(s) 255
ApeKI GCWGC 2 cut(s) 21, 179
AsuHPI GGTGA 2 cut(s) 52, 218
BanII GRGCYC 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 33, 166
BciT130I CCWGG 2 cut(s) 124, 263
BciVI GTATCC 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 1 cut(s) 258
BfuI GTATCC 1 cut(s) 165
BisI GCNGC 2 cut(s) 22, 180
BlsI GCNGC 2 cut(s) 23, 181
Bme1390I CCNGG 2 cut(s) 124, 263
BmrFI CCNGG 2 cut(s) 124, 263
BmsI GCATC 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse118I RCCGGY 1 cut(s) 200
BseBI CCWGG 2 cut(s) 124, 263
BseGI GGATG 2 cut(s) 84, 162
BseLI CCNNNNNNNGG 1 cut(s) 203
BseRI GAGGAG 1 cut(s) 243
BseXI GCAGC 2 cut(s) 33, 166
BsiHKAI GWGCWC 1 cut(s) 213
BsiSI CCGG 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 1 cut(s) 128
BspACI CCGC 2 cut(s) 198, 204
BsrFI RCCGGY 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 200
BssMI GATC 1 cut(s) 128
Bst2UI CCWGG 2 cut(s) 124, 263
BstC8I GCNNGC 2 cut(s) 151, 202
BstF5I GGATG 2 cut(s) 84, 162
BstKTI GATC 1 cut(s) 131
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 1 cut(s) 128
BstMWI GCNNNNNNNGC 2 cut(s) 159, 185
BstNI CCWGG 2 cut(s) 124, 263
BstSCI CCNGG 2 cut(s) 122, 261
BstV1I GCAGC 2 cut(s) 33, 166
BsuI GTATCC 1 cut(s) 165
BtsCI GGATG 2 cut(s) 84, 162
Cac8I GCNNGC 2 cut(s) 151, 202
Cfr10I RCCGGY 1 cut(s) 200
CviAII CATG 1 cut(s) 52
CviJI RGCY 5 cut(s) 50, 138, 149, 211, 261
CviKI_1 RGCY 5 cut(s) 50, 138, 149, 211, 261
DpnI GATC 1 cut(s) 130
DpnII GATC 1 cut(s) 128
Ecl136II GAGCTC 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 213
Eco53kI GAGCTC 1 cut(s) 211
EcoICRI GAGCTC 1 cut(s) 211
EcoRII CCWGG 2 cut(s) 122, 261
EcoT38I GRGCYC 1 cut(s) 213
FaeI CATG 1 cut(s) 55
FaiI YATR 6 cut(s) 14, 26, 53, 59, 79, 135
FatI CATG 1 cut(s) 51
FauI CCCGC 1 cut(s) 205
Fnu4HI GCNGC 2 cut(s) 22, 180
FokI GGATG 2 cut(s) 71, 149
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 2 cut(s) 22, 180
FspBI CTAG 1 cut(s) 258
GluI GCNGC 2 cut(s) 22, 180
HapII CCGG 1 cut(s) 201
Hin1II CATG 1 cut(s) 55
HinfI GANTC 1 cut(s) 64
HpaII CCGG 1 cut(s) 201
HphI GGTGA 2 cut(s) 52, 218
Hpy188I TCNGA 1 cut(s) 171
Hpy99I CGWCG 1 cut(s) 171
HpyAV CCTTC 2 cut(s) 37, 228
HpyCH4V TGCA 2 cut(s) 247, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 185
Hsp92II CATG 1 cut(s) 55
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
Kzo9I GATC 1 cut(s) 128
LpnPI CCDG 7 cut(s) 53, 109, 136, 159, 214, 248, 275
Lsp1109I GCAGC 2 cut(s) 33, 166
LweI GCATC 1 cut(s) 171
MaeI CTAG 1 cut(s) 258
MalI GATC 1 cut(s) 130
MboI GATC 1 cut(s) 128
MboII GAAGA 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 2 cut(s) 226, 241
MmeI TCCRAC 2 cut(s) 117, 149
MnlI CCTC 2 cut(s) 264, 288
MreI CGCCGGCG 1 cut(s) 200
MroNI GCCGGC 1 cut(s) 200
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 2 cut(s) 124, 263
MvaI CCWGG 2 cut(s) 124, 263
MwoI GCNNNNNNNGC 2 cut(s) 159, 185
NaeI GCCGGC 1 cut(s) 202
NdeII GATC 1 cut(s) 128
NgoMIV GCCGGC 1 cut(s) 200
NlaIII CATG 1 cut(s) 55
PdiI GCCGGC 1 cut(s) 202
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 2 cut(s) 23, 181
Psp124BI GAGCTC 1 cut(s) 213
Psp6I CCWGG 2 cut(s) 122, 261
PspGI CCWGG 2 cut(s) 122, 261
SacI GAGCTC 1 cut(s) 213
SatI GCNGC 2 cut(s) 22, 180
Sau3AI GATC 1 cut(s) 128
ScrFI CCNGG 2 cut(s) 124, 263
SduI GDGCHC 1 cut(s) 213
SetI ASST 4 cut(s) 48, 140, 151, 213
SfaNI GCATC 1 cut(s) 171
SgrAI CRCCGGYG 1 cut(s) 200
Sse9I AATT 2 cut(s) 226, 241
SsiI CCGC 2 cut(s) 198, 204
SspMI CTAG 1 cut(s) 258
SstI GAGCTC 1 cut(s) 213
StyD4I CCNGG 2 cut(s) 122, 261
TaqI TCGA 1 cut(s) 280
TasI AATT 2 cut(s) 226, 241
TfiI GAWTC 1 cut(s) 64
TseI GCWGC 2 cut(s) 21, 179
TspDTI ATGAA 2 cut(s) 46, 210
TspGWI ACGGA 1 cut(s) 155
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.