Rmu_sc0003219.1_g000019

Leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003219.1
OG0006619
Physical Location & Seq
Reverse (-)
89522 .. 92607
3086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003219.1_g000019.1.cds

Sequence Viewer

Length: 600 bp
atggaaggctgggattgcatgacctttacccagctttttactgttcatctgacgcctcctactgtgcagccacgttctgctttcttctccattccttctttctggcagcatctctacccggtcaagaatttagtcagcagctggcctttttttcagccctctgtcatcaaaattcaaaagccaacttatggctgggcaaactttcaccagtggaagttgttttttctccatggctggtcaccacatcatcattctccccttttgcccgggcaaagcaagaccggtgcacttgctcttagagttggatatgagtatattatgtgtcagaactcagaagttcctgattggttttcaatcttgcagttcttgaagacaataatgatggaaagcacacggcttcagggacaagtttttcaagccctatttggcttttacaattcgcagacggtacggtcaaaaaaatcggttttcatcttcaaatcaatagcagcttgcatagaaaactcttctcaaggttttcatctcagtatgtctcaaatcgtcttccgcactctcgcctccaagggcatgctcaacggcgtcaagcaagggtcttggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

199

Amino Acids

22.94

Weight (kDa)

9.71

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 451
AccB7I CCANNNNNTGG 1 cut(s) 188
AciI CCGC 1 cut(s) 547
AcsI RAATTY 2 cut(s) 127, 171
AcuI CTGAAG 1 cut(s) 383
AcyI GRCGYC 2 cut(s) 53, 579
AfaI GTAC 1 cut(s) 450
AfiI CCNNNNNNNGG 1 cut(s) 188
AgeI ACCGGT 1 cut(s) 281
AgsI TTSAA 5 cut(s) 176, 354, 370, 416, 478
AluBI AGCT 3 cut(s) 34, 141, 491
AluI AGCT 3 cut(s) 34, 141, 491
Alw21I GWGCWC 1 cut(s) 289
Alw26I GTCTC 1 cut(s) 537
Alw44I GTGCAC 1 cut(s) 285
AlwNI CAGNNNCTG 1 cut(s) 141
Ama87I CYCGRG 1 cut(s) 266
AoxI GGCC 1 cut(s) 143
ApaLI GTGCAC 1 cut(s) 285
ApeKI GCWGC 4 cut(s) 67, 106, 138, 488
ApoI RAATTY 2 cut(s) 127, 171
AsiGI ACCGGT 1 cut(s) 281
AsuC2I CCSGG 3 cut(s) 119, 267, 268
AsuHPI GGTGA 2 cut(s) 197, 231
AvaI CYCGRG 1 cut(s) 266
BaeGI GKGCMC 1 cut(s) 289
BbsI GAAGAC 2 cut(s) 377, 535
Bbv12I GWGCWC 1 cut(s) 289
BbvI GCAGC 4 cut(s) 79, 118, 150, 500
BccI CCATC 1 cut(s) 376
BceAI ACGGC 2 cut(s) 410, 592
BcnI CCSGG 3 cut(s) 119, 267, 268
BcoDI GTCTC 1 cut(s) 537
BisI GCNGC 4 cut(s) 68, 107, 139, 489
BlsI GCNGC 4 cut(s) 69, 108, 140, 490
Bme1390I CCNGG 3 cut(s) 119, 267, 268
BmeT110I CYCGRG 1 cut(s) 266
BmrFI CCNGG 3 cut(s) 119, 267, 268
BmsI GCATC 1 cut(s) 118
BpiI GAAGAC 2 cut(s) 377, 535
BpuEI CTTGAG 1 cut(s) 495
BpuMI CCSGG 3 cut(s) 119, 267, 268
BsaHI GRCGYC 2 cut(s) 53, 579
BsaJI CCNNGG 3 cut(s) 229, 266, 561
BsaWI WCCGGW 1 cut(s) 281
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 208
BseDI CCNNGG 3 cut(s) 229, 266, 561
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMII CTCAG 2 cut(s) 345, 538
BseNI ACTGG 1 cut(s) 208
BseSI GKGCMC 1 cut(s) 289
BseXI GCAGC 4 cut(s) 79, 118, 150, 500
BseYI CCCAGC 3 cut(s) 9, 30, 192
BsgI GTGCAG 1 cut(s) 86
BshFI GGCC 1 cut(s) 145
BshTI ACCGGT 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 289
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 3 cut(s) 119, 267, 282
BslFI GGGAC 1 cut(s) 417
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 537
BsmFI GGGAC 1 cut(s) 417
BsnI GGCC 1 cut(s) 145
BsoBI CYCGRG 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 289
Bsp19I CCATGG 1 cut(s) 229
BspACI CCGC 1 cut(s) 547
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 2 cut(s) 344, 537
BsrFI RCCGGY 1 cut(s) 281
BsrI ACTGG 1 cut(s) 208
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 3 cut(s) 229, 266, 561
BssNI GRCGYC 2 cut(s) 53, 579
BssT1I CCWWGG 2 cut(s) 229, 561
Bst4CI ACNGT 4 cut(s) 43, 64, 448, 453
Bst6I CTCTTC 1 cut(s) 511
BstACI GRCGYC 2 cut(s) 53, 579
BstC8I GCNNGC 3 cut(s) 143, 493, 569
BstDEI CTNAG 3 cut(s) 296, 331, 524
BstDSI CCRYGG 1 cut(s) 229
BstEII GGTNACC 1 cut(s) 237
BstMAI GTCTC 1 cut(s) 537
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstNSI RCATGY 1 cut(s) 571
BstPI GGTNACC 1 cut(s) 237
BstSCI CCNGG 3 cut(s) 117, 265, 266
BstSLI GKGCMC 1 cut(s) 289
BstV1I GCAGC 4 cut(s) 79, 118, 150, 500
BstV2I GAAGAC 2 cut(s) 377, 535
BsuRI GGCC 1 cut(s) 145
BtgI CCRYGG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 215
Cac8I GCNNGC 3 cut(s) 143, 493, 569
CaiI CAGNNNCTG 1 cut(s) 141
Cfr10I RCCGGY 1 cut(s) 281
Cfr9I CCCGGG 1 cut(s) 266
CseI GACGC 2 cut(s) 61, 568
Csp6I GTAC 1 cut(s) 449
CspAI ACCGGT 1 cut(s) 281
CviAII CATG 3 cut(s) 19, 230, 568
CviQI GTAC 1 cut(s) 449
DdeI CTNAG 3 cut(s) 296, 331, 524
DrdI GACNNNNNNGTC 1 cut(s) 451
DseDI GACNNNNNNGTC 1 cut(s) 451
Eam1104I CTCTTC 1 cut(s) 511
EarI CTCTTC 1 cut(s) 511
Eco130I CCWWGG 2 cut(s) 229, 561
Eco57I CTGAAG 1 cut(s) 383
Eco88I CYCGRG 1 cut(s) 266
Eco91I GGTNACC 1 cut(s) 237
EcoO65I GGTNACC 1 cut(s) 237
EcoT14I CCWWGG 2 cut(s) 229, 561
ErhI CCWWGG 2 cut(s) 229, 561
FaeI CATG 3 cut(s) 22, 233, 571
FaiI YATR 9 cut(s) 20, 189, 231, 309, 315, 320, 497, 530, 569
FaqI GGGAC 1 cut(s) 417
FatI CATG 3 cut(s) 18, 229, 567
Fnu4HI GCNGC 4 cut(s) 68, 107, 139, 489
Fsp4HI GCNGC 4 cut(s) 68, 107, 139, 489
GluI GCNGC 4 cut(s) 68, 107, 139, 489
GsaI CCCAGC 3 cut(s) 13, 34, 196
HaeIII GGCC 1 cut(s) 145
HapII CCGG 3 cut(s) 119, 267, 282
HgaI GACGC 2 cut(s) 61, 568
Hin1I GRCGYC 2 cut(s) 53, 579
Hin1II CATG 3 cut(s) 22, 233, 571
HpaII CCGG 3 cut(s) 119, 267, 282
HphI GGTGA 2 cut(s) 197, 231
Hpy166II GTNNAC 1 cut(s) 287
Hpy188I TCNGA 3 cut(s) 51, 327, 334
Hpy188III TCNNGA 3 cut(s) 124, 341, 367
Hpy8I GTNNAC 1 cut(s) 287
HpyAV CCTTC 1 cut(s) 105
HpyCH4III ACNGT 4 cut(s) 43, 64, 448, 453
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 5 cut(s) 18, 67, 287, 361, 495
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpyF3I CTNAG 3 cut(s) 296, 331, 524
HpySE526I ACGT 1 cut(s) 73
Hsp92I GRCGYC 2 cut(s) 53, 579
Hsp92II CATG 3 cut(s) 22, 233, 571
Lsp1109I GCAGC 4 cut(s) 79, 118, 150, 500
LweI GCATC 1 cut(s) 118
MaeII ACGT 1 cut(s) 73
MaeIII GTNAC 1 cut(s) 237
MboII GAAGA 5 cut(s) 76, 382, 466, 498, 535
MhlI GDGCHC 1 cut(s) 289
MluCI AATT 3 cut(s) 127, 171, 436
MmeI TCCRAC 1 cut(s) 283
MnlI CCTC 3 cut(s) 66, 169, 568
MspA1I CMGCKG 1 cut(s) 141
MspI CCGG 3 cut(s) 119, 267, 282
MspR9I CCNGG 3 cut(s) 119, 267, 268
MwoI GCNNNNNNNGC 1 cut(s) 15
NciI CCSGG 3 cut(s) 119, 267, 268
NcoI CCATGG 1 cut(s) 229
NlaIII CATG 3 cut(s) 22, 233, 571
NmuCI GTSAC 1 cut(s) 237
NspI RCATGY 1 cut(s) 571
PaeI GCATGC 1 cut(s) 571
PflMI CCANNNNNTGG 1 cut(s) 188
PinAI ACCGGT 1 cut(s) 281
PkrI GCNGC 4 cut(s) 69, 108, 140, 490
PspEI GGTNACC 1 cut(s) 237
PspFI CCCAGC 3 cut(s) 9, 30, 192
PstNI CAGNNNCTG 1 cut(s) 141
PvuII CAGCTG 1 cut(s) 141
RsaI GTAC 1 cut(s) 450
RsaNI GTAC 1 cut(s) 449
SatI GCNGC 4 cut(s) 68, 107, 139, 489
ScrFI CCNGG 3 cut(s) 119, 267, 268
SduI GDGCHC 1 cut(s) 289
SetI ASST 6 cut(s) 26, 36, 76, 143, 493, 517
SfaNI GCATC 1 cut(s) 118
SmaI CCCGGG 1 cut(s) 268
SmlI CTYRAG 1 cut(s) 510
SmoI CTYRAG 1 cut(s) 510
SphI GCATGC 1 cut(s) 571
SrfI GCCCGGGC 1 cut(s) 268
Sse9I AATT 3 cut(s) 127, 171, 436
SsiI CCGC 1 cut(s) 547
StyD4I CCNGG 3 cut(s) 117, 265, 266
StyI CCWWGG 2 cut(s) 229, 561
TaaI ACNGT 4 cut(s) 43, 64, 448, 453
TaiI ACGT 1 cut(s) 76
TasI AATT 3 cut(s) 127, 171, 436
TscAI CASTG 1 cut(s) 215
TseFI GTSAC 1 cut(s) 237
TseI GCWGC 4 cut(s) 67, 106, 138, 488
Tsp45I GTSAC 1 cut(s) 237
TspDTI ATGAA 3 cut(s) 35, 460, 509
TspMI CCCGGG 1 cut(s) 266
TspRI CASTG 1 cut(s) 215
Van91I CCANNNNNTGG 1 cut(s) 188
VneI GTGCAC 1 cut(s) 285
XapI RAATTY 2 cut(s) 127, 171
XceI RCATGY 1 cut(s) 571
XcmI CCANNNNNNNNNTGG 1 cut(s) 189
XmaI CCCGGG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.