Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006619

Physical Location & Seq

Genomic Coordinates Forward (+)

86522652 .. 86523671

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036918

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCGCTAGAGTCGATTTCACTGATGGATAGCTTAATGAAGGTGGGGATGTTTGTGGTTGTTCAAGCTTTGGTTTATGTAGTCCTTTCCAGTTCATCCAATCTCTTCTCTGAGAACAAACTCAGGTCGTTCAACAATAGCTTTAAACTTGCTCGTTCTGCTAGCATCAACTGTATACTCGCCGCCATCTCTGACTTACCCACTGGATCTACTACTACCGATCAGGACTCACCATTCAAAAAATGGGTTTTCATCTTCGAATCAATAGCAGCTTGCATAGAAAACTCTTCTCAAGGTTTTCATCTCCGTATGTCTCGAATCGTCTTCCGCTCTCTCGCCTCCAAGGGCATGCTCAACGGTGTCAAGCAAGGGTCTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

13.84

Weight (kDa)

9.39

Isoelectric Point (pI)

55.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05575 AT2G31945
fragaria_vesca	FvH4_3g44500 FvH4_7g00010
malus_domestica	MD00G1055400.v1.1 MD02G1319500.v1.1 MD03G1011900.v1.1 MD11G1015000.v1.1
prunus_persica	Prupe.2G002500_v2.0.a1 Prupe.6G012500_v2.0.a1
pyrus_communis	pycom11g01030
rosa_chinensis	RchiOBHm_Chr1g0313231 RchiOBHm_Chr5g0081201
rosa_laevigata	RLG00000036918
rosa_multiflora	Rmu_sc0003219.1_g000019
rosa_roxburghii	Rroxscaffold_1G00002270 Rroxscaffold_4G00332320
rosa_rugosa	Rorug05G0474400 RorugPtG0001900.1
rosa_samantha	Rh1AG001900 Rh1CG006400 Rh1DG001800 Rh1DG050200 Rh5DG560600
rosa_wichuraiana	Rw1G000100 Rw5G048930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	330
AccI	GTMKAC	1 cut(s)	175
AciI	CCGC	2 cut(s)	183, 328
AclWI	GGATC	1 cut(s)	214
AgsI	TTSAA	3 cut(s)	65, 133, 238
AluBI	AGCT	4 cut(s)	33, 68, 141, 272
AluI	AGCT	4 cut(s)	33, 68, 141, 272
Alw26I	GTCTC	1 cut(s)	318
AlwI	GGATC	1 cut(s)	214
ApeKI	GCWGC	1 cut(s)	269
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	222
AsuII	TTCGAA	1 cut(s)	258
AsuNHI	GCTAGC	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	316
BbvI	GCAGC	1 cut(s)	281
BccI	CCATC	2 cut(s)	19, 194
BcoDI	GTCTC	1 cut(s)	318
BfaI	CTAG	2 cut(s)	8, 162
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	2 cut(s)	183, 270
BlsI	GCNGC	2 cut(s)	184, 271
BmsI	GCATC	1 cut(s)	174
BmtI	GCTAGC	1 cut(s)	165
BpiI	GAAGAC	1 cut(s)	316
Bpu14I	TTCGAA	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	342
Bse1I	ACTGG	2 cut(s)	90, 208
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	2 cut(s)	54, 95
BseMII	CTCAG	2 cut(s)	102, 136
BseNI	ACTGG	2 cut(s)	90, 208
BseXI	GCAGC	1 cut(s)	281
BsmAI	GTCTC	1 cut(s)	318
Bsp119I	TTCGAA	1 cut(s)	258
Bsp143I	GATC	2 cut(s)	206, 220
BspACI	CCGC	2 cut(s)	183, 328
BspCNI	CTCAG	2 cut(s)	103, 135
BspOI	GCTAGC	1 cut(s)	165
BspPI	GGATC	1 cut(s)	214
BspT104I	TTCGAA	1 cut(s)	258
BsrBI	CCGCTC	1 cut(s)	330
BsrI	ACTGG	2 cut(s)	90, 208
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	2 cut(s)	206, 220
BssNAI	GTATAC	1 cut(s)	176
BssT1I	CCWWGG	1 cut(s)	342
Bst1107I	GTATAC	1 cut(s)	176
Bst4CI	ACNGT	2 cut(s)	173, 359
Bst6I	CTCTTC	2 cut(s)	110, 292
BstBI	TTCGAA	1 cut(s)	258
BstC8I	GCNNGC	3 cut(s)	163, 274, 350
BstDEI	CTNAG	2 cut(s)	111, 122
BstF5I	GGATG	2 cut(s)	54, 95
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	209, 223
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	2 cut(s)	206, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	352
BstV1I	GCAGC	1 cut(s)	281
BstV2I	GAAGAC	1 cut(s)	316
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BstZ17I	GTATAC	1 cut(s)	176
BtsCI	GGATG	2 cut(s)	54, 95
BtsIMutI	CAGTG	2 cut(s)	20, 201
Cac8I	GCNNGC	3 cut(s)	163, 274, 350
CfoI	GCGC	1 cut(s)	7
CviAII	CATG	1 cut(s)	349
CviJI	RGCY	4 cut(s)	33, 68, 141, 272
CviKI_1	RGCY	4 cut(s)	33, 68, 141, 272
DdeI	CTNAG	2 cut(s)	111, 122
DpnI	GATC	2 cut(s)	208, 222
DpnII	GATC	2 cut(s)	206, 220
DraI	TTTAAA	1 cut(s)	145
Eam1104I	CTCTTC	2 cut(s)	110, 292
EarI	CTCTTC	2 cut(s)	110, 292
Eco130I	CCWWGG	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	1 cut(s)	352
FaiI	YATR	5 cut(s)	78, 176, 278, 311, 350
FatI	CATG	1 cut(s)	348
FblI	GTMKAC	1 cut(s)	175
Fnu4HI	GCNGC	2 cut(s)	183, 270
FokI	GGATG	2 cut(s)	61, 82
Fsp4HI	GCNGC	2 cut(s)	183, 270
FspBI	CTAG	2 cut(s)	8, 162
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	183, 270
HaeII	RGCGCY	1 cut(s)	8
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	1 cut(s)	352
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	66
HinfI	GANTC	4 cut(s)	11, 227, 260, 318
HphI	GGTGA	1 cut(s)	222
Hpy166II	GTNNAC	1 cut(s)	176
Hpy188I	TCNGA	2 cut(s)	112, 193
Hpy188III	TCNNGA	2 cut(s)	224, 315
Hpy8I	GTNNAC	1 cut(s)	176
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	2 cut(s)	173, 359
HpyCH4V	TGCA	1 cut(s)	276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	2 cut(s)	111, 122
Hsp92II	CATG	1 cut(s)	352
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	2 cut(s)	206, 220
LpnPI	CCDG	4 cut(s)	103, 109, 189, 209
Lsp1109I	GCAGC	1 cut(s)	281
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	2 cut(s)	8, 162
MalI	GATC	2 cut(s)	208, 222
MbiI	CCGCTC	1 cut(s)	330
MboI	GATC	2 cut(s)	206, 220
MboII	GAAGA	4 cut(s)	97, 247, 279, 316
MflI	RGATCY	1 cut(s)	206
MlyI	GAGTC	2 cut(s)	20, 221
MnlI	CCTC	1 cut(s)	349
MseI	TTAA	2 cut(s)	35, 144
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	2 cut(s)	206, 220
NheI	GCTAGC	1 cut(s)	161
NlaIII	CATG	1 cut(s)	352
NspI	RCATGY	1 cut(s)	352
NspV	TTCGAA	1 cut(s)	258
PaeI	GCATGC	1 cut(s)	352
PfeI	GAWTC	2 cut(s)	260, 318
PkrI	GCNGC	2 cut(s)	184, 271
PleI	GAGTC	2 cut(s)	19, 221
PpsI	GAGTC	2 cut(s)	19, 221
PsuI	RGATCY	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	35, 144
SatI	GCNGC	2 cut(s)	183, 270
Sau3AI	GATC	2 cut(s)	206, 220
SchI	GAGTC	2 cut(s)	20, 221
SetI	ASST	7 cut(s)	35, 45, 70, 128, 143, 274, 298
SfaNI	GCATC	1 cut(s)	174
SfuI	TTCGAA	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	291
SmoI	CTYRAG	1 cut(s)	291
SphI	GCATGC	1 cut(s)	352
SsiI	CCGC	2 cut(s)	183, 328
SspMI	CTAG	2 cut(s)	8, 162
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	173, 359
TaqI	TCGA	3 cut(s)	14, 258, 316
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	2 cut(s)	260, 318
Tru1I	TTAA	2 cut(s)	35, 144
Tru9I	TTAA	2 cut(s)	35, 144
TscAI	CASTG	2 cut(s)	27, 208
TseI	GCWGC	1 cut(s)	269
TspDTI	ATGAA	4 cut(s)	53, 84, 241, 290
TspGWI	ACGGA	1 cut(s)	296
TspRI	CASTG	2 cut(s)	27, 208
XceI	RCATGY	1 cut(s)	352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	240
XmiI	GTMKAC	1 cut(s)	175
XspI	CTAG	2 cut(s)	8, 162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.