Rorug05G0474400

phosphatase 2c

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
65187612 .. 65190162
2551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0474400.1

Sequence Viewer

Length: 963 bp
ATGGCTCATGAATACCCTCGCAGTTCAGGCTTTGAGCAGAGTTATCGTTGTTACCCTGTCTCGTTCATCGACAAGCAACATCTGGAAAAGGGTGATAAAATTATAATGCCTCCCTCAGCTCTCGATCGCCTCGCATCTATGCACGTGGACTACCCTATGTTGTTTGAACTTAACAATGCTACTGCTGGACGAGTTACTCATTGTGGGGTCTTGGAATTTGTTGCTGATGAGGGCCTCATATACGTACCATACTGGATGATGGAGAACATGCTCCTACAAGAGGGAGACATTGTTCAAGTGAAGAACAAAAGCCTGGTAAAGGGAACCTATGTGAAGTTGCAGCCCCACACCAAGGACTTCCTTGATATTTCAAACCCCAAAGCCATTTTGGAGACTACATTGAGGAGCTACTCTTGTTTGACCACTGGTGACACTATCATGGTTCCTTATAACAATAAGAAGTATTACATTAACATAGTTGAAGCAAAACCCTCATCTGCAATCAGTATCATTGAGACAGACTGTGAGGTTGATTTTGCCCCTCCTCTTGATTACGTGGAACCTGCAAAACCAGCTCCATCGACGTCATCTACTTTGCCAAAGAAGAGACCACAAGAAGCTGAAGAAGAACCAGTTCAAAAGGTTGCAAGGTTCAATCCATTTACAGGTTCAGCAAGGCGATTGGATGGAAAGCCTTCGACGGAATCAGTTGCACCAGTTTCCTCTCCCATACTTAAGCAGCACCAACGGGAGAGTGAAAACGGAGCCAAGGATTCCAAGCCATCAACTTCTGCTTCACGCCAACGTTCTGGAAAGCTTGTGTTTGGTTCAAATTCCAACCAGCCCACAAAGGAAGCCCCAAAAGCTGCTCCAAACAAACAAGAGTCATCTGAGAAGGCAGAAGAGGAAAAAGAGACAAAGTTCCAAGCATTCACAGGGAAGAAGTATTCTCTGAAAGGGTGA

Protein Analysis

320

Amino Acids

35.66

Weight (kDa)

7.63

Isoelectric Point (pI)

56.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UFD1_N1 PF03152 11 - 105 3.7e-40 Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 1
UFD1_N2 PF24842 107 - 182 2.7e-37 Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000546)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica MD14G1049300.v1.1
rosa_chinensis RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata RLG00000001164 RLG00000013941
rosa_multiflora Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 104, 450
AatII GACGTC 1 cut(s) 587
Acc36I ACCTGC 1 cut(s) 571
AclI AACGTT 1 cut(s) 805
AcsI RAATTY 2 cut(s) 215, 832
AcuI CTGAAG 1 cut(s) 642
AcvI CACGTG 1 cut(s) 145
AcyI GRCGYC 1 cut(s) 584
AfaI GTAC 1 cut(s) 246
AfiI CCNNNNNNNGG 4 cut(s) 280, 319, 352, 665
AflII CTTAAG 1 cut(s) 734
AgsI TTSAA 7 cut(s) 167, 296, 372, 482, 638, 655, 831
AjnI CCWGG 1 cut(s) 312
AloI GAACNNNNNNTCC 2 cut(s) 276, 308
AluBI AGCT 6 cut(s) 119, 408, 575, 620, 817, 866
AluI AGCT 6 cut(s) 119, 408, 575, 620, 817, 866
Alw26I GTCTC 6 cut(s) 64, 279, 386, 509, 601, 908
AoxI GGCC 1 cut(s) 232
ApeKI GCWGC 3 cut(s) 340, 739, 866
ApoI RAATTY 2 cut(s) 215, 832
Asp700I GAANNNNTTC 2 cut(s) 633, 694
AspS9I GGNCC 1 cut(s) 232
AsuHPI GGTGA 2 cut(s) 104, 440
BbrPI CACGTG 1 cut(s) 145
BbvCI CCTCAGC 1 cut(s) 115
BbvI GCAGC 3 cut(s) 352, 751, 853
BccI CCATC 4 cut(s) 253, 586, 680, 790
BcgI CGANNNNNNTGC 2 cut(s) 26, 60
BciT130I CCWGG 1 cut(s) 314
BcoDI GTCTC 6 cut(s) 64, 279, 386, 509, 601, 908
BfrI CTTAAG 1 cut(s) 734
BfuAI ACCTGC 1 cut(s) 571
BisI GCNGC 3 cut(s) 341, 740, 867
BlsI GCNGC 3 cut(s) 342, 741, 868
Bme1390I CCNGG 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 4 cut(s) 325, 444, 561, 766
BmrFI CCNGG 1 cut(s) 314
BmsI GCATC 1 cut(s) 143
Bpu10I CCTNAGC 1 cut(s) 115
BsaAI YACGTR 3 cut(s) 145, 244, 556
BsaHI GRCGYC 1 cut(s) 584
BsaI GGTCTC 1 cut(s) 601
BsaJI CCNNGG 2 cut(s) 351, 768
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 4 cut(s) 280, 319, 352, 665
Bse1I ACTGG 4 cut(s) 257, 430, 632, 716
BseBI CCWGG 1 cut(s) 314
BseDI CCNNGG 2 cut(s) 351, 768
BseGI GGATG 2 cut(s) 261, 691
BseLI CCNNNNNNNGG 4 cut(s) 280, 319, 352, 665
BseMII CTCAG 2 cut(s) 129, 882
BseNI ACTGG 4 cut(s) 257, 430, 632, 716
BseRI GAGGAG 2 cut(s) 418, 534
BseXI GCAGC 3 cut(s) 352, 751, 853
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 1 cut(s) 234
BsiEI CGRYCG 1 cut(s) 127
BslI CCNNNNNNNGG 4 cut(s) 280, 319, 352, 665
BsmAI GTCTC 6 cut(s) 64, 279, 386, 509, 601, 908
BsmI GAATGC 1 cut(s) 929
BsnI GGCC 1 cut(s) 234
Bso31I GGTCTC 1 cut(s) 601
Bsp143I GATC 1 cut(s) 124
BspANI GGCC 1 cut(s) 234
BspCNI CTCAG 2 cut(s) 128, 883
BspHI TCATGA 1 cut(s) 7
BspLI GGNNCC 4 cut(s) 325, 444, 561, 766
BspMI ACCTGC 1 cut(s) 571
BspTI CTTAAG 1 cut(s) 734
BspTNI GGTCTC 1 cut(s) 601
BsrI ACTGG 4 cut(s) 257, 430, 632, 716
BssECI CCNNGG 2 cut(s) 351, 768
BssMI GATC 1 cut(s) 124
BssNI GRCGYC 1 cut(s) 584
BssT1I CCWWGG 2 cut(s) 351, 768
Bst2UI CCWGG 1 cut(s) 314
Bst4CI ACNGT 1 cut(s) 524
Bst6I CTCTTC 2 cut(s) 599, 897
BstACI GRCGYC 1 cut(s) 584
BstAFI CTTAAG 1 cut(s) 734
BstBAI YACGTR 3 cut(s) 145, 244, 556
BstDEI CTNAG 2 cut(s) 115, 891
BstENI CCTNNNNNAGG 2 cut(s) 278, 317
BstF5I GGATG 2 cut(s) 261, 691
BstKTI GATC 1 cut(s) 127
BstMAI GTCTC 6 cut(s) 64, 279, 386, 509, 601, 908
BstMBI GATC 1 cut(s) 124
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 3 cut(s) 27, 572, 863
BstNI CCWGG 1 cut(s) 314
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 312
BstSNI TACGTA 1 cut(s) 244
BstV1I GCAGC 3 cut(s) 352, 751, 853
BstXI CCANNNNNNTGG 1 cut(s) 809
BsuRI GGCC 1 cut(s) 234
BtsCI GGATG 2 cut(s) 261, 691
BtsIMutI CAGTG 1 cut(s) 423
BveI ACCTGC 1 cut(s) 571
CciI TCATGA 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 232
Csp6I GTAC 1 cut(s) 245
CviAII CATG 3 cut(s) 8, 268, 439
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 2 cut(s) 115, 891
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
Eam1104I CTCTTC 2 cut(s) 599, 897
EarI CTCTTC 2 cut(s) 599, 897
Eco105I TACGTA 1 cut(s) 244
Eco130I CCWWGG 2 cut(s) 351, 768
Eco31I GGTCTC 1 cut(s) 601
Eco57I CTGAAG 1 cut(s) 642
Eco72I CACGTG 1 cut(s) 145
EcoNI CCTNNNNNAGG 2 cut(s) 278, 317
EcoO109I RGGNCCY 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 312
EcoT14I CCWWGG 2 cut(s) 351, 768
ErhI CCWWGG 2 cut(s) 351, 768
FaeI CATG 3 cut(s) 11, 271, 442
FatI CATG 3 cut(s) 7, 267, 438
Fnu4HI GCNGC 3 cut(s) 341, 740, 867
FokI GGATG 2 cut(s) 268, 698
Fsp4HI GCNGC 3 cut(s) 341, 740, 867
GluI GCNGC 3 cut(s) 341, 740, 867
HaeIII GGCC 1 cut(s) 234
Hin1I GRCGYC 1 cut(s) 584
Hin1II CATG 3 cut(s) 11, 271, 442
HindIII AAGCTT 1 cut(s) 815
HinfI GANTC 3 cut(s) 704, 773, 884
HphI GGTGA 2 cut(s) 104, 440
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 2 cut(s) 892, 954
Hpy188III TCNNGA 5 cut(s) 8, 83, 122, 548, 810
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 2 cut(s) 586, 703
HpyAV CCTTC 2 cut(s) 705, 889
HpyCH4III ACNGT 1 cut(s) 524
HpyCH4IV ACGT 5 cut(s) 144, 243, 555, 584, 805
HpyCH4V TGCA 6 cut(s) 142, 340, 500, 566, 647, 713
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 572, 863
HpyF3I CTNAG 2 cut(s) 115, 891
HpySE526I ACGT 5 cut(s) 144, 243, 555, 584, 805
Hsp92I GRCGYC 1 cut(s) 584
Hsp92II CATG 3 cut(s) 11, 271, 442
Kzo9I GATC 1 cut(s) 124
LmnI GCTCC 5 cut(s) 276, 405, 580, 764, 874
Lsp1109I GCAGC 3 cut(s) 352, 751, 853
LweI GCATC 1 cut(s) 143
MaeII ACGT 5 cut(s) 144, 243, 555, 584, 805
MaeIII GTNAC 3 cut(s) 50, 193, 428
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 6 cut(s) 313, 616, 635, 638, 914, 952
MluCI AATT 3 cut(s) 99, 215, 832
MlyI GAGTC 1 cut(s) 893
MmeI TCCRAC 1 cut(s) 861
MroXI GAANNNNTTC 2 cut(s) 633, 694
MseI TTAA 3 cut(s) 171, 471, 735
MslI CAYNNNNRTG 1 cut(s) 437
MspCI CTTAAG 1 cut(s) 734
MspR9I CCNGG 1 cut(s) 314
Mva1269I GAATGC 1 cut(s) 929
MvaI CCWGG 1 cut(s) 314
MwoI GCNNNNNNNGC 3 cut(s) 27, 572, 863
NdeII GATC 1 cut(s) 124
NlaIII CATG 3 cut(s) 11, 271, 442
NlaIV GGNNCC 4 cut(s) 325, 444, 561, 766
NmuCI GTSAC 1 cut(s) 428
NspI RCATGY 1 cut(s) 271
PagI TCATGA 1 cut(s) 7
PctI GAATGC 1 cut(s) 929
PdmI GAANNNNTTC 2 cut(s) 633, 694
PfeI GAWTC 2 cut(s) 704, 773
PkrI GCNGC 3 cut(s) 342, 741, 868
Ple19I CGATCG 1 cut(s) 127
PleI GAGTC 1 cut(s) 892
PmaCI CACGTG 1 cut(s) 145
PmlI CACGTG 1 cut(s) 145
PpsI GAGTC 1 cut(s) 892
Ppu21I YACGTR 3 cut(s) 145, 244, 556
PsiI TTATAA 2 cut(s) 104, 450
Psp1406I AACGTT 1 cut(s) 805
Psp6I CCWGG 1 cut(s) 312
PspCI CACGTG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 312
PspN4I GGNNCC 4 cut(s) 325, 444, 561, 766
PspPI GGNCC 1 cut(s) 232
PvuI CGATCG 1 cut(s) 127
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
RseI CAYNNNNRTG 1 cut(s) 437
SaqAI TTAA 3 cut(s) 171, 471, 735
SatI GCNGC 3 cut(s) 341, 740, 867
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 1 cut(s) 893
ScrFI CCNGG 1 cut(s) 314
SfaNI GCATC 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 734
SmoI CTYRAG 1 cut(s) 734
SnaBI TACGTA 1 cut(s) 244
Sse9I AATT 3 cut(s) 99, 215, 832
StyD4I CCNGG 1 cut(s) 312
StyI CCWWGG 2 cut(s) 351, 768
TaaI ACNGT 1 cut(s) 524
TaiI ACGT 5 cut(s) 147, 246, 558, 587, 808
TaqI TCGA 4 cut(s) 69, 123, 581, 698
TasI AATT 3 cut(s) 99, 215, 832
TfiI GAWTC 2 cut(s) 704, 773
Tru1I TTAA 3 cut(s) 171, 471, 735
Tru9I TTAA 3 cut(s) 171, 471, 735
TscAI CASTG 1 cut(s) 430
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 3 cut(s) 340, 739, 866
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 2 cut(s) 24, 55
TspGWI ACGGA 2 cut(s) 716, 777
TspRI CASTG 1 cut(s) 430
Vha464I CTTAAG 1 cut(s) 734
XagI CCTNNNNNAGG 2 cut(s) 278, 317
XapI RAATTY 2 cut(s) 215, 832
XceI RCATGY 1 cut(s) 271
XcmI CCANNNNNNNNNTGG 1 cut(s) 385
XmnI GAANNNNTTC 2 cut(s) 633, 694
ZraI GACGTC 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.