Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8369635.1

Orthogroup ID

OG0000546

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 938

Gene Structure 937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8369635.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 937 bp

atggaaagtccgcctgaggttgccgcagattccttctctgctggcaccagagagggagtaaaggatccaagtttggagcaaaagcttaggcaggttacagatgagcatgggattttgcctcaccatttgaaaaggttatttctgtattgttcactctttccttttggttatgaatttagaaaagatgagttggttcagttatggatagctgaaggctttattagagagaggcatggggagagaatggaagatattgctggcgagcattttaattccttggagaaggaagtcttctttgtgttttcaagatgtgatttcactatggattttgattcggtgctctcggatccgtcggataatcccagcaacttcttgtacaaagtaaatcctagcaagtattcattattggaagacaccatttcttcaggtaattatttcaaagcagtggatggtaaggtagacggagcctctgaaatgacgagacatttgtctttgattggtgaggatattgatgggatggcttttgggatccttcaaaactttaagcatttgcgcacactgcatatgctatcttgtcgtggatcttctatgaaacacgtccctcgtgatttgtgtttcaccttaacgttcttgaaaaccttaaatttgagtgggacattgatttctgagctgccgagttccattggaaatgtaaaatcattacgttatgtggatgcctcacatacacctatttcacggttacccgaatcaatagattctctttacaatttacaaaccattaagctcagaggctgctttcactttgttcagttgccaaaaggaatgaagaagctaaaaaagctccggcatattgatcttgacatcattcggcaattggattccatgcctgcacacctggggagcttgagtaatcttcaaactttgccagcatttcttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

PP2C

Protein Analysis

312

Amino Acids

35.42

Weight (kDa)

6.35

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica	MD14G1049300.v1.1
rosa_chinensis	RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata	RLG00000001164 RLG00000013941
rosa_multiflora	Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii	Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa	Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha	Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana	Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	554
Acc36I	ACCTGC	1 cut(s)	82
AccB1I	GGYRCC	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	459
AciI	CCGC	2 cut(s)	11, 24
AclI	AACGTT	1 cut(s)	626
AclWI	GGATC	7 cut(s)	59, 72, 341, 354, 523, 536, 589
AcsI	RAATTY	2 cut(s)	173, 643
AcuI	CTGAAG	2 cut(s)	231, 408
AfaI	GTAC	1 cut(s)	377
AflIII	ACRYGT	1 cut(s)	595
AgsI	TTSAA	6 cut(s)	130, 306, 439, 536, 634, 917
AjiI	CACGTC	1 cut(s)	598
AjnI	CCWGG	1 cut(s)	894
AluBI	AGCT	7 cut(s)	85, 209, 670, 784, 832, 841, 903
AluI	AGCT	7 cut(s)	85, 209, 670, 784, 832, 841, 903
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	1 cut(s)	475
AlwI	GGATC	7 cut(s)	59, 72, 341, 354, 523, 536, 589
AlwNI	CAGNNNCTG	1 cut(s)	792
ApeKI	GCWGC	2 cut(s)	670, 792
ApoI	RAATTY	2 cut(s)	173, 643
ArsI	GACNNNNNNTTYG	2 cut(s)	469, 501
AspLEI	GCGC	1 cut(s)	555
AsuHPI	GGTGA	3 cut(s)	113, 512, 610
AxyI	CCTNAGG	1 cut(s)	15
BamHI	GGATCC	3 cut(s)	64, 346, 528
BanI	GGYRCC	1 cut(s)	44
BauI	CACGAG	1 cut(s)	603
BbsI	GAAGAC	2 cut(s)	283, 417
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	657, 779
BccI	CCATC	3 cut(s)	443, 506, 511
BciT130I	CCWGG	1 cut(s)	896
BcoDI	GTCTC	1 cut(s)	475
BfaI	CTAG	1 cut(s)	390
BfuAI	ACCTGC	1 cut(s)	82
BisI	GCNGC	3 cut(s)	24, 671, 793
BlsI	GCNGC	3 cut(s)	25, 672, 794
Bme1390I	CCNGG	1 cut(s)	896
BmgBI	CACGTC	1 cut(s)	598
BmiI	GGNNCC	5 cut(s)	46, 66, 348, 466, 530
BmrFI	CCNGG	1 cut(s)	896
BmsI	GCATC	1 cut(s)	703
BoxI	GACNNNNGTC	1 cut(s)	487
BpiI	GAAGAC	2 cut(s)	283, 417
Bpu10I	CCTNAGC	1 cut(s)	86
BpuEI	CTTGAG	1 cut(s)	925
BsaJI	CCNNGG	2 cut(s)	276, 895
BsaXI	ACNNNNNCTCC	2 cut(s)	892, 922
Bse21I	CCTNAGG	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	896
BseDI	CCNNGG	2 cut(s)	276, 895
BseGI	GGATG	3 cut(s)	454, 522, 718
BseMII	CTCAG	3 cut(s)	6, 657, 799
BseXI	GCAGC	2 cut(s)	657, 779
BseYI	CCCAGC	1 cut(s)	362
BsgI	GTGCAG	1 cut(s)	873
BshNI	GGYRCC	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	342
BsiSI	CCGG	1 cut(s)	844
BslFI	GGGAC	2 cut(s)	584, 667
BsmAI	GTCTC	1 cut(s)	475
BsmFI	GGGAC	2 cut(s)	584, 667
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp1407I	TGTACA	1 cut(s)	375
Bsp143I	GATC	5 cut(s)	64, 346, 528, 581, 853
BspACI	CCGC	2 cut(s)	11, 24
BspCNI	CTCAG	3 cut(s)	7, 658, 798
BspLI	GGNNCC	5 cut(s)	46, 66, 348, 466, 530
BspMI	ACCTGC	1 cut(s)	82
BspPI	GGATC	7 cut(s)	59, 72, 341, 354, 523, 536, 589
BspT107I	GGYRCC	1 cut(s)	44
BsrGI	TGTACA	1 cut(s)	375
BssECI	CCNNGG	2 cut(s)	276, 895
BssMI	GATC	5 cut(s)	64, 346, 528, 581, 853
BssSI	CACGAG	1 cut(s)	603
BssT1I	CCWWGG	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	603
Bst2UI	CCWGG	1 cut(s)	896
Bst4CI	ACNGT	1 cut(s)	738
BstAUI	TGTACA	1 cut(s)	375
BstC8I	GCNNGC	5 cut(s)	43, 259, 263, 888, 927
BstDEI	CTNAG	4 cut(s)	15, 86, 666, 785
BstEII	GGTNACC	1 cut(s)	738
BstF5I	GGATG	3 cut(s)	454, 522, 718
BstHHI	GCGC	1 cut(s)	555
BstKTI	GATC	5 cut(s)	67, 349, 531, 584, 856
BstMAI	GTCTC	1 cut(s)	475
BstMBI	GATC	5 cut(s)	64, 346, 528, 581, 853
BstMWI	GCNNNNNNNGC	2 cut(s)	559, 838
BstNI	CCWGG	1 cut(s)	896
BstPAI	GACNNNNGTC	1 cut(s)	487
BstPI	GGTNACC	1 cut(s)	738
BstSCI	CCNGG	1 cut(s)	894
BstV1I	GCAGC	2 cut(s)	657, 779
BstV2I	GAAGAC	2 cut(s)	283, 417
BstX2I	RGATCY	4 cut(s)	64, 346, 528, 581
BstYI	RGATCY	4 cut(s)	64, 346, 528, 581
Bsu36I	CCTNAGG	1 cut(s)	15
BtrI	CACGTC	1 cut(s)	598
BtsCI	GGATG	3 cut(s)	454, 522, 718
BtsI	GCAGTG	2 cut(s)	450, 557
BtsIMutI	CAGTG	2 cut(s)	450, 557
BveI	ACCTGC	1 cut(s)	82
Cac8I	GCNNGC	5 cut(s)	43, 259, 263, 888, 927
CaiI	CAGNNNCTG	1 cut(s)	792
CfoI	GCGC	1 cut(s)	555
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	3 cut(s)	107, 233, 883
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	4 cut(s)	15, 86, 666, 785
DpnI	GATC	5 cut(s)	66, 348, 530, 583, 855
DpnII	GATC	5 cut(s)	64, 346, 528, 581, 853
Eco130I	CCWWGG	1 cut(s)	276
Eco57I	CTGAAG	2 cut(s)	231, 408
Eco81I	CCTNAGG	1 cut(s)	15
Eco91I	GGTNACC	1 cut(s)	738
EcoO65I	GGTNACC	1 cut(s)	738
EcoRII	CCWGG	1 cut(s)	894
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	3 cut(s)	110, 236, 886
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FaqI	GGGAC	2 cut(s)	584, 667
FatI	CATG	3 cut(s)	106, 232, 882
FauNDI	CATATG	1 cut(s)	564
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	3 cut(s)	24, 671, 793
FokI	GGATG	3 cut(s)	461, 529, 725
Fsp4HI	GCNGC	3 cut(s)	24, 671, 793
FspBI	CTAG	1 cut(s)	390
FspI	TGCGCA	1 cut(s)	554
GlaI	GCGC	1 cut(s)	554
GluI	GCNGC	3 cut(s)	24, 671, 793
GsaI	CCCAGC	1 cut(s)	366
HapII	CCGG	1 cut(s)	844
HhaI	GCGC	1 cut(s)	555
Hin1II	CATG	3 cut(s)	110, 236, 886
Hin6I	GCGC	1 cut(s)	553
HinP1I	GCGC	1 cut(s)	553
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	5 cut(s)	29, 332, 746, 755, 878
HpaII	CCGG	1 cut(s)	844
HphI	GGTGA	3 cut(s)	113, 512, 610
Hpy166II	GTNNAC	2 cut(s)	152, 460
Hpy188I	TCNGA	5 cut(s)	346, 355, 472, 667, 788
Hpy188III	TCNNGA	4 cut(s)	306, 605, 631, 857
Hpy8I	GTNNAC	2 cut(s)	152, 460
Hpy99I	CGWCG	1 cut(s)	355
HpyAV	CCTTC	4 cut(s)	43, 206, 277, 542
HpyCH4III	ACNGT	1 cut(s)	738
HpyCH4IV	ACGT	3 cut(s)	597, 626, 703
HpyCH4V	TGCA	2 cut(s)	562, 890
HpyF10VI	GCNNNNNNNGC	2 cut(s)	559, 838
HpyF3I	CTNAG	4 cut(s)	15, 86, 666, 785
HpySE526I	ACGT	3 cut(s)	597, 626, 703
Hsp92II	CATG	3 cut(s)	110, 236, 886
HspAI	GCGC	1 cut(s)	553
Kzo9I	GATC	5 cut(s)	64, 346, 528, 581, 853
LmnI	GCTCC	4 cut(s)	76, 464, 846, 900
Lsp1109I	GCAGC	2 cut(s)	657, 779
LweI	GCATC	1 cut(s)	703
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	3 cut(s)	597, 626, 703
MaeIII	GTNAC	2 cut(s)	94, 738
MalI	GATC	5 cut(s)	66, 348, 530, 583, 855
MboI	GATC	5 cut(s)	64, 346, 528, 581, 853
MboII	GAAGA	7 cut(s)	260, 283, 414, 422, 576, 838, 905
MfeI	CAATTG	1 cut(s)	872
MflI	RGATCY	4 cut(s)	64, 346, 528, 581
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	6 cut(s)	173, 271, 430, 643, 766, 872
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	9 cut(s)	10, 46, 129, 222, 478, 496, 612, 727, 782
MseI	TTAA	5 cut(s)	270, 543, 623, 641, 780
MspI	CCGG	1 cut(s)	844
MspR9I	CCNGG	1 cut(s)	896
MunI	CAATTG	1 cut(s)	872
MvaI	CCWGG	1 cut(s)	896
MwoI	GCNNNNNNNGC	2 cut(s)	559, 838
NdeI	CATATG	1 cut(s)	564
NdeII	GATC	5 cut(s)	64, 346, 528, 581, 853
NlaIII	CATG	3 cut(s)	110, 236, 886
NlaIV	GGNNCC	5 cut(s)	46, 66, 348, 466, 530
NmeAIII	GCCGAG	1 cut(s)	699
NsbI	TGCGCA	1 cut(s)	554
PfeI	GAWTC	5 cut(s)	29, 332, 746, 755, 878
PkrI	GCNGC	3 cut(s)	25, 672, 794
PshAI	GACNNNNGTC	1 cut(s)	487
Psp1406I	AACGTT	1 cut(s)	626
Psp6I	CCWGG	1 cut(s)	894
PspEI	GGTNACC	1 cut(s)	738
PspFI	CCCAGC	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	894
PspN4I	GGNNCC	5 cut(s)	46, 66, 348, 466, 530
PstNI	CAGNNNCTG	1 cut(s)	792
PsuI	RGATCY	4 cut(s)	64, 346, 528, 581
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SaqAI	TTAA	5 cut(s)	270, 543, 623, 641, 780
SatI	GCNGC	3 cut(s)	24, 671, 793
Sau3AI	GATC	5 cut(s)	64, 346, 528, 581, 853
ScrFI	CCNGG	1 cut(s)	896
SduI	GDGCHC	1 cut(s)	342
SfaNI	GCATC	1 cut(s)	703
SmlI	CTYRAG	1 cut(s)	904
SmoI	CTYRAG	1 cut(s)	904
Sse9I	AATT	6 cut(s)	173, 271, 430, 643, 766, 872
SsiI	CCGC	2 cut(s)	11, 24
SspMI	CTAG	1 cut(s)	390
StyD4I	CCNGG	1 cut(s)	894
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	738
TaiI	ACGT	3 cut(s)	600, 629, 706
TasI	AATT	6 cut(s)	173, 271, 430, 643, 766, 872
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	5 cut(s)	29, 332, 746, 755, 878
Tru1I	TTAA	5 cut(s)	270, 543, 623, 641, 780
Tru9I	TTAA	5 cut(s)	270, 543, 623, 641, 780
TscAI	CASTG	2 cut(s)	450, 564
TseI	GCWGC	2 cut(s)	670, 792
TspDTI	ATGAA	4 cut(s)	186, 390, 605, 839
TspGWI	ACGGA	2 cut(s)	339, 477
TspRI	CASTG	2 cut(s)	450, 564
XapI	RAATTY	2 cut(s)	173, 643
XmiI	GTMKAC	1 cut(s)	459
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.