Rroxscaffold_3G00226100

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000546
Physical Location & Seq
Reverse (-)
9549349 .. 9554131
4783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00226100.1

Sequence Viewer

Length: 2226 bp
ATGGATTCGCCGCCGCCGTCAACGCCTGAAAAAGAAAAGGCGTCTTCTCTCAAACTCAGCAAGGACTCCGTCAAAATCAAGCAGCGACGGACGCCTAACAAAGTGATCCACACCACAGCGGGCGACTTCAGGTCCGTGGTCCAACGCTGGACCGGCCGCCCTTCGGTCCCCGCCGATCTCCCTCCGGGTGGGAGTCAGACGAGCTCTTTATCGGATCAGATGAACAGATCAGGTGACGATGACATGATGGAAACAATTGTTGACGATATGGAAGGTGTTCAGTCTTGGTCGGCGCCGCCCACTCGAGCTGTATTATTCTCTCCGGTGACCTCTTGTGACGAATCGCAGAAATTTGATGAGTTAGATAAACTTCCGAAGAAAATCATGGAATTCTCTTCTTCTAATTCAGATTTCTTTTCATCTCCTTCGGTTTCTCAATGGTTCGAACCGTACGATGGTTTATGGCGCGGCGGTGACAGTTCCTTGTTTTCTTCTCACGTTCCGCAACAACAACAAGATATAGAACACGAGAGTTTGCCTGAACAGTTAAAGATGTATTTCTTTCTTTTTCCATCAGTTTATGAGTTTAGGAAAGATGAGTTGGTTCAAATGTGGATGGCGGAAGGCTTTATTGAAGAGAGCCAAACAGAGAGAATGGAGGACACTGGTACTGCTTATTTCAATTCTTTACACAAGATAGGCTTTCTTGTGCCCTCTAGATGTGATACCAGGGTGGATTTTGATTCGGTATTTTCGGTACCCGCCTATAATCCAGGCAACTTATTGTATAAAGTAAATCCTGTCAAGCTCTCAGAGTTGGTAAACACAACTGCGCTGGCGGATTATTTTGCAGCCGTGGATGGTAATTTAGATGGGGCCTTGGAAACGACACAGCATTTGTCTTTGAATTGTAAGGAAATTAGTGATATGACCTTTGGGATTCTCAAAAATTTTAAGCGTCTGCGCACCCTCCTACTCCTGTCTGCCCATGGGTCTTCCATCAAACATGTTCCTCGTGACTTGTTTTTGAGCTTAAAGGATTTGAGAACACTAAATTTGAGTCGAACACTTGTTTCAGAAGTGCCAAGTTCCATTCGAAATGTAAAATCATTACGATATTTGGATCTCTCCAATACTCCCATCACACAGTTGCCAGAGTCAATAGATTCTCTTCACCATGTGCAGACAATAAAACTTAGAGGTTGTGCACACTTCCTTCAGTTGCCAAAGGGCACGAAGAAGCTTGTCAATCTACGACATATTGATTTGGATATCATTAGGCAATTGCGGGCCATGCCTCCATACATTGGAAACTTAACCAACCTTCAGACTCTGTCAGCATTTCTGGTTGGTCGAGAGGAGGGGTGCCGTATTGGAGAGCTTAAGAATTTGAATAATCTCAGAGGAGTACTTCGCATTTCAAGGCTTGAAAATGTATCAGATAAGGAAGAGGCTGAGGAAGCTGCTTTGATCGACAAGAAATACGTCCAAAGGCTAGAGCTCCGGTGGAGTAATGTGTTCACTGAGAAAATAGAGGGACAAGAGAAAATCCTTGAATGTCTTCAACCCCATGCTGGCCTTAAAGAGTTACAGATACAACACTATGCTGGGTCAACACTTCCAACTTGGATAAGCCATCCATCTTTTGCTGAACTTCTTGTTCTCACTCTCTACAGATGTACTAATTGTCAACTTCTCCCATCCATTGGGCAGTTACGAATGCTCAAATCACTTTCTATTATAGAGATGAATGGGGTGAAAGAAATCAATCATCAATTTTTCAGAGATGGCTTAGTTGATCAAGCATTCCCTGCATTTCCGAAACTTGAGATATTAGAAGTTGACATCATGTTCAATTTGAAAGAGTGGAGGGAAGTAAAATTAGGTGACTTACCATCCCTACTTAAACTCACAATGGACTCTTGCCCTGAACTTGACTGTCTTCCATCACTTTCTTGGCTAAAATCCCTCAAGCATTTGGAATTCAGGCGTTGTCCAAAGCTTCTGTCCTTGCCTTCTGATGGACTACCAACTTCACTTGAGTCTTTCATAGTAATAGATTGCCCTGAACTGAAAGAATGGTGCCGCAAGGCAGAAGGTGAAGATTGGAGCAAGATAACTAGTGTTCCCAGCATATGGTTTGATTTTGAAGAAGTAAGATCCAAGTCTCATTGTACACCTGGAACATCAGTAGAGATTTATGAGAATATGGAATTGGATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 ko04016 ko04075 ko04931 map04014 map04016 map04075 map04931
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

741

Amino Acids

84.1

Weight (kDa)

5.59

Isoelectric Point (pI)

50.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 34 - 57 1e-05 VQ motif
WHD_DRP PF23559 189 - 237 8.5e-16 Disease resistance protein Winged helix domain
LRR_8 PF13855 330 - 381 4.5e-07 Leucine rich repeat
LRR_14 PF23598 365 - 640 1.1e-26 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 458 - 583 4.4e-39 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000546)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica MD14G1049300.v1.1
rosa_chinensis RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata RLG00000001164 RLG00000013941
rosa_multiflora Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 965
Acc65I GGTACC 1 cut(s) 757
AccB1I GGYRCC 4 cut(s) 292, 757, 1365, 2082
AccB7I CCANNNNNTGG 3 cut(s) 1307, 1706, 2136
AccII CGCG 1 cut(s) 468
AclWI GGATC 4 cut(s) 100, 222, 1131, 2154
AcoI YGGCCR 1 cut(s) 154
AcsI RAATTY 6 cut(s) 350, 389, 949, 1054, 1387, 1982
AcuI CTGAAG 3 cut(s) 112, 1202, 1310
AcyI GRCGYC 3 cut(s) 41, 92, 293
AdeI CACNNNGTG 1 cut(s) 1180
AfaI GTAC 6 cut(s) 452, 670, 759, 1410, 1681, 2176
AfiI CCNNNNNNNGG 8 cut(s) 163, 188, 455, 1307, 1574, 1706, 2021, 2136
AflII CTTAAG 1 cut(s) 1382
AflIII ACRYGT 1 cut(s) 1006
AhdI GACNNNNNGTC 1 cut(s) 130
AhlI ACTAGT 1 cut(s) 2120
AjnI CCWGG 3 cut(s) 728, 772, 2179
AjuI GAANNNNNNNTTGG 3 cut(s) 584, 616, 2198
AluBI AGCT 9 cut(s) 204, 308, 808, 1032, 1243, 1381, 1463, 1501, 2002
AluI AGCT 9 cut(s) 204, 308, 808, 1032, 1243, 1381, 1463, 1501, 2002
Alw21I GWGCWC 3 cut(s) 206, 1210, 1503
Alw26I GTCTC 1 cut(s) 2172
Alw44I GTGCAC 1 cut(s) 1206
AlwI GGATC 4 cut(s) 100, 222, 1131, 2154
AlwNI CAGNNNCTG 1 cut(s) 1333
Ama87I CYCGRG 1 cut(s) 303
AoxI GGCC 4 cut(s) 154, 876, 1290, 1576
ApaLI GTGCAC 1 cut(s) 1206
ApeKI GCWGC 3 cut(s) 82, 851, 1463
ApoI RAATTY 6 cut(s) 350, 389, 949, 1054, 1387, 1982
ArsI GACNNNNNNTTYG 4 cut(s) 880, 912, 1991, 2023
Asp700I GAANNNNTTC 2 cut(s) 276, 1560
Asp718I GGTACC 1 cut(s) 757
AspLEI GCGC 4 cut(s) 295, 468, 835, 966
AspS9I GGNCC 6 cut(s) 132, 139, 150, 166, 876, 1290
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 7 cut(s) 245, 337, 485, 1166, 1768, 1898, 2111
AsuII TTCGAA 2 cut(s) 444, 1096
AvaI CYCGRG 1 cut(s) 303
AvaII GGWCC 4 cut(s) 132, 139, 150, 166
BaeGI GKGCMC 3 cut(s) 714, 1210, 1235
BaeI ACNNNNGTAYC 2 cut(s) 717, 750
BanI GGYRCC 4 cut(s) 292, 757, 1365, 2082
BanII GRGCYC 2 cut(s) 206, 1503
BauI CACGAG 2 cut(s) 527, 1014
BbsI GAAGAC 4 cut(s) 36, 987, 1553, 1934
Bbv12I GWGCWC 3 cut(s) 206, 1210, 1503
BbvCI CCTCAGC 1 cut(s) 1455
BbvI GCAGC 3 cut(s) 94, 863, 1450
BceAI ACGGC 2 cut(s) 839, 1353
BciT130I CCWGG 3 cut(s) 730, 774, 2181
BclI TGATCA 1 cut(s) 1798
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 2172
BcuI ACTAGT 1 cut(s) 2120
BfaI CTAG 3 cut(s) 717, 1496, 2121
BfmI CTRYAG 1 cut(s) 1672
BfoI RGCGCY 1 cut(s) 296
BfrI CTTAAG 1 cut(s) 1382
BisI GCNGC 9 cut(s) 11, 14, 83, 157, 296, 469, 852, 1464, 2086
BlsI GCNGC 9 cut(s) 12, 15, 84, 158, 297, 470, 853, 1465, 2087
BmcAI AGTACT 1 cut(s) 1410
Bme1390I CCNGG 4 cut(s) 186, 730, 774, 2181
Bme18I GGWCC 4 cut(s) 132, 139, 150, 166
BmeRI GACNNNNNGTC 1 cut(s) 130
BmeT110I CYCGRG 1 cut(s) 303
BmgT120I GGNCC 6 cut(s) 132, 139, 150, 166, 876, 1290
BmiI GGNNCC 6 cut(s) 168, 294, 759, 877, 1367, 2084
BmrFI CCNGG 4 cut(s) 186, 730, 774, 2181
BpiI GAAGAC 4 cut(s) 36, 987, 1553, 1934
Bpu10I CCTNAGC 1 cut(s) 1455
Bpu14I TTCGAA 2 cut(s) 444, 1096
BpuEI CTTGAG 3 cut(s) 1847, 1955, 2060
BpuMI CCSGG 1 cut(s) 186
BsaHI GRCGYC 3 cut(s) 41, 92, 293
BsaJI CCNNGG 5 cut(s) 135, 729, 855, 879, 988
BsaWI WCCGGW 2 cut(s) 322, 1503
Bsc4I CCNNNNNNNGG 8 cut(s) 163, 188, 455, 1307, 1574, 1706, 2021, 2136
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 670
BseBI CCWGG 3 cut(s) 730, 774, 2181
BseDI CCNNGG 5 cut(s) 135, 729, 855, 879, 988
BseGI GGATG 6 cut(s) 621, 865, 1636, 1700, 1895, 2224
BseLI CCNNNNNNNGG 8 cut(s) 163, 188, 455, 1307, 1574, 1706, 2021, 2136
BseMII CTCAG 5 cut(s) 70, 825, 1414, 1446, 1515
BseNI ACTGG 1 cut(s) 670
BseRI GAGGAG 2 cut(s) 1373, 1419
BseSI GKGCMC 3 cut(s) 714, 1210, 1235
BseX3I CGGCCG 1 cut(s) 154
BseXI GCAGC 3 cut(s) 94, 863, 1450
BseYI CCCAGC 2 cut(s) 1607, 2129
BsgI GTGCAG 1 cut(s) 1202
Bsh1236I CGCG 1 cut(s) 468
Bsh1285I CGRYCG 1 cut(s) 157
BshFI GGCC 4 cut(s) 156, 878, 1292, 1578
BshNI GGYRCC 4 cut(s) 292, 757, 1365, 2082
BsiEI CGRYCG 1 cut(s) 157
BsiHKAI GWGCWC 3 cut(s) 206, 1210, 1503
BsiHKCI CYCGRG 1 cut(s) 303
BsiSI CCGG 4 cut(s) 153, 185, 323, 1504
BsiWI CGTACG 1 cut(s) 450
BslFI GGGAC 2 cut(s) 152, 1551
BslI CCNNNNNNNGG 8 cut(s) 163, 188, 455, 1307, 1574, 1706, 2021, 2136
BsmAI GTCTC 1 cut(s) 2172
BsmFI GGGAC 2 cut(s) 152, 1551
BsmI GAATGC 2 cut(s) 1725, 1805
BsnI GGCC 4 cut(s) 156, 878, 1292, 1578
BsoBI CYCGRG 1 cut(s) 303
Bsp119I TTCGAA 2 cut(s) 444, 1096
Bsp1286I GDGCHC 5 cut(s) 206, 714, 1210, 1235, 1503
Bsp1407I TGTACA 1 cut(s) 2174
Bsp143I GATC 8 cut(s) 105, 175, 214, 227, 1123, 1470, 1798, 2159
Bsp19I CCATGG 1 cut(s) 988
BspANI GGCC 4 cut(s) 156, 878, 1292, 1578
BspCNI CTCAG 5 cut(s) 69, 824, 1413, 1447, 1516
BspFNI CGCG 1 cut(s) 468
BspLI GGNNCC 6 cut(s) 168, 294, 759, 877, 1367, 2084
BspPI GGATC 4 cut(s) 100, 222, 1131, 2154
BspT104I TTCGAA 2 cut(s) 444, 1096
BspT107I GGYRCC 4 cut(s) 292, 757, 1365, 2082
BspTI CTTAAG 1 cut(s) 1382
BsrFI RCCGGY 1 cut(s) 152
BsrGI TGTACA 1 cut(s) 2174
BsrI ACTGG 1 cut(s) 670
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 5 cut(s) 135, 729, 855, 879, 988
BssMI GATC 8 cut(s) 105, 175, 214, 227, 1123, 1470, 1798, 2159
BssNI GRCGYC 3 cut(s) 41, 92, 293
BssSI CACGAG 2 cut(s) 527, 1014
BssT1I CCWWGG 2 cut(s) 879, 988
Bst2BI CACGAG 2 cut(s) 527, 1014
Bst2UI CCWGG 3 cut(s) 730, 774, 2181
Bst4CI ACNGT 5 cut(s) 450, 479, 546, 1149, 1940
Bst6I CTCTTC 4 cut(s) 400, 630, 1176, 1443
BstACI GRCGYC 3 cut(s) 41, 92, 293
BstAFI CTTAAG 1 cut(s) 1382
BstAPI GCANNNNNTGC 1 cut(s) 1811
BstAUI TGTACA 1 cut(s) 2174
BstBI TTCGAA 2 cut(s) 444, 1096
BstC8I GCNNGC 4 cut(s) 121, 837, 1290, 1576
BstDEI CTNAG 7 cut(s) 56, 811, 1196, 1400, 1455, 1524, 1792
BstDSI CCRYGG 3 cut(s) 135, 855, 988
BstEII GGTNACC 1 cut(s) 325
BstF5I GGATG 6 cut(s) 621, 865, 1636, 1700, 1895, 2224
BstFNI CGCG 1 cut(s) 468
BstH2I RGCGCY 1 cut(s) 296
BstHHI GCGC 4 cut(s) 295, 468, 835, 966
BstKTI GATC 8 cut(s) 108, 178, 217, 230, 1126, 1473, 1801, 2162
BstMAI GTCTC 1 cut(s) 2172
BstMBI GATC 8 cut(s) 105, 175, 214, 227, 1123, 1470, 1798, 2159
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 6 cut(s) 22, 91, 153, 1294, 1460, 1811
BstNI CCWGG 3 cut(s) 730, 774, 2181
BstNSI RCATGY 1 cut(s) 1010
BstPI GGTNACC 1 cut(s) 325
BstSCI CCNGG 4 cut(s) 184, 728, 772, 2179
BstSFI CTRYAG 1 cut(s) 1672
BstSLI GKGCMC 3 cut(s) 714, 1210, 1235
BstUI CGCG 1 cut(s) 468
BstV1I GCAGC 3 cut(s) 94, 863, 1450
BstV2I GAAGAC 4 cut(s) 36, 987, 1553, 1934
BstX2I RGATCY 2 cut(s) 1123, 2159
BstYI RGATCY 2 cut(s) 1123, 2159
BstZI CGGCCG 1 cut(s) 154
BsuRI GGCC 4 cut(s) 156, 878, 1292, 1578
BtgI CCRYGG 3 cut(s) 135, 855, 988
BtsCI GGATG 6 cut(s) 621, 865, 1636, 1700, 1895, 2224
BtsIMutI CAGTG 2 cut(s) 663, 1521
Cac8I GCNNGC 4 cut(s) 121, 837, 1290, 1576
CaiI CAGNNNCTG 1 cut(s) 1333
CfoI GCGC 4 cut(s) 295, 468, 835, 966
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 6 cut(s) 132, 139, 150, 166, 876, 1290
CseI GACGC 3 cut(s) 30, 100, 947
Csp6I GTAC 6 cut(s) 451, 669, 758, 1409, 1680, 2175
CviAII CATG 8 cut(s) 244, 385, 989, 1007, 1178, 1294, 1571, 1849
CviQI GTAC 6 cut(s) 451, 669, 758, 1409, 1680, 2175
DdeI CTNAG 7 cut(s) 56, 811, 1196, 1400, 1455, 1524, 1792
DinI GGCGCC 1 cut(s) 294
DpnI GATC 8 cut(s) 107, 177, 216, 229, 1125, 1472, 1800, 2161
DpnII GATC 8 cut(s) 105, 175, 214, 227, 1123, 1470, 1798, 2159
DraIII CACNNNGTG 1 cut(s) 1180
DriI GACNNNNNGTC 1 cut(s) 130
EaeI YGGCCR 1 cut(s) 154
EagI CGGCCG 1 cut(s) 154
Eam1104I CTCTTC 4 cut(s) 400, 630, 1176, 1443
Eam1105I GACNNNNNGTC 1 cut(s) 130
EarI CTCTTC 4 cut(s) 400, 630, 1176, 1443
EciI GGCGGA 2 cut(s) 635, 854
Ecl136II GAGCTC 2 cut(s) 204, 1501
EclXI CGGCCG 1 cut(s) 154
Eco130I CCWWGG 2 cut(s) 879, 988
Eco24I GRGCYC 2 cut(s) 206, 1503
Eco32I GATATC 1 cut(s) 1273
Eco47I GGWCC 4 cut(s) 132, 139, 150, 166
Eco52I CGGCCG 1 cut(s) 154
Eco53kI GAGCTC 2 cut(s) 204, 1501
Eco57I CTGAAG 3 cut(s) 112, 1202, 1310
Eco88I CYCGRG 1 cut(s) 303
Eco91I GGTNACC 1 cut(s) 325
EcoICRI GAGCTC 2 cut(s) 204, 1501
EcoO109I RGGNCCY 1 cut(s) 876
EcoO65I GGTNACC 1 cut(s) 325
EcoRI GAATTC 2 cut(s) 389, 1982
EcoRII CCWGG 3 cut(s) 728, 772, 2179
EcoRV GATATC 1 cut(s) 1273
EcoT14I CCWWGG 2 cut(s) 879, 988
EcoT38I GRGCYC 2 cut(s) 206, 1503
EgeI GGCGCC 1 cut(s) 294
EheI GGCGCC 1 cut(s) 294
ErhI CCWWGG 2 cut(s) 879, 988
FaeI CATG 8 cut(s) 247, 388, 992, 1010, 1181, 1297, 1574, 1852
FalI AAGNNNNNCTT 2 cut(s) 686, 718
FaqI GGGAC 2 cut(s) 152, 1551
FatI CATG 8 cut(s) 243, 384, 988, 1006, 1177, 1293, 1570, 1848
FauI CCCGC 4 cut(s) 112, 178, 769, 1281
FauNDI CATATG 1 cut(s) 2135
FbaI TGATCA 1 cut(s) 1798
Fnu4HI GCNGC 9 cut(s) 11, 14, 83, 157, 296, 469, 852, 1464, 2086
FokI GGATG 5 cut(s) 628, 872, 1623, 1687, 1882
FriOI GRGCYC 2 cut(s) 206, 1503
Fsp4HI GCNGC 9 cut(s) 11, 14, 83, 157, 296, 469, 852, 1464, 2086
FspBI CTAG 3 cut(s) 717, 1496, 2121
FspI TGCGCA 1 cut(s) 965
GlaI GCGC 4 cut(s) 294, 467, 834, 965
GluI GCNGC 9 cut(s) 11, 14, 83, 157, 296, 469, 852, 1464, 2086
GsaI CCCAGC 2 cut(s) 1611, 2133
HaeII RGCGCY 1 cut(s) 296
HaeIII GGCC 4 cut(s) 156, 878, 1292, 1578
HapII CCGG 4 cut(s) 153, 185, 323, 1504
HgaI GACGC 3 cut(s) 30, 100, 947
HhaI GCGC 4 cut(s) 295, 468, 835, 966
Hin1I GRCGYC 3 cut(s) 41, 92, 293
Hin1II CATG 8 cut(s) 247, 388, 992, 1010, 1181, 1297, 1574, 1852
Hin6I GCGC 4 cut(s) 293, 466, 833, 964
HinP1I GCGC 4 cut(s) 293, 466, 833, 964
HincII GTYRAC 5 cut(s) 21, 262, 1614, 1691, 1843
HindII GTYRAC 5 cut(s) 21, 262, 1614, 1691, 1843
HindIII AAGCTT 2 cut(s) 1241, 2000
HpaII CCGG 4 cut(s) 153, 185, 323, 1504
HphI GGTGA 7 cut(s) 245, 337, 485, 1166, 1768, 1898, 2111
Hpy166II GTNNAC 9 cut(s) 21, 262, 823, 1208, 1521, 1614, 1691, 1843, 2177
Hpy188III TCNNGA 3 cut(s) 717, 1016, 1355
Hpy8I GTNNAC 9 cut(s) 21, 262, 823, 1208, 1521, 1614, 1691, 1843, 2177
Hpy99I CGWCG 1 cut(s) 90
HpyAV CCTTC 8 cut(s) 171, 266, 435, 617, 1226, 1334, 2025, 2090
HpyCH4III ACNGT 5 cut(s) 450, 479, 546, 1149, 1940
HpyCH4IV ACGT 2 cut(s) 498, 1485
HpyCH4V TGCA 4 cut(s) 851, 1183, 1208, 1814
HpyF10VI GCNNNNNNNGC 6 cut(s) 22, 91, 153, 1294, 1460, 1811
HpyF3I CTNAG 7 cut(s) 56, 811, 1196, 1400, 1455, 1524, 1792
HpySE526I ACGT 2 cut(s) 498, 1485
Hsp92I GRCGYC 3 cut(s) 41, 92, 293
Hsp92II CATG 8 cut(s) 247, 388, 992, 1010, 1181, 1297, 1574, 1852
HspAI GCGC 4 cut(s) 293, 466, 833, 964
KasI GGCGCC 1 cut(s) 292
KpnI GGTACC 1 cut(s) 761
Ksp22I TGATCA 1 cut(s) 1798
Kzo9I GATC 8 cut(s) 105, 175, 214, 227, 1123, 1470, 1798, 2159
LmnI GCTCC 2 cut(s) 1506, 2109
Lsp1109I GCAGC 3 cut(s) 94, 863, 1450
MaeI CTAG 3 cut(s) 717, 1496, 2121
MaeII ACGT 2 cut(s) 498, 1485
MaeIII GTNAC 8 cut(s) 233, 325, 335, 473, 1016, 1587, 1713, 1886
MalI GATC 8 cut(s) 107, 177, 216, 229, 1125, 1472, 1800, 2161
MboI GATC 8 cut(s) 105, 175, 214, 227, 1123, 1470, 1798, 2159
MfeI CAATTG 2 cut(s) 255, 1283
MflI RGATCY 2 cut(s) 1123, 2159
MhlI GDGCHC 5 cut(s) 206, 714, 1210, 1235, 1503
Mly113I GGCGCC 1 cut(s) 293
MlyI GAGTC 7 cut(s) 59, 202, 1069, 1166, 1324, 1913, 2051
MmeI TCCRAC 2 cut(s) 166, 1646
MroXI GAANNNNTTC 2 cut(s) 276, 1560
MseI TTAA 7 cut(s) 548, 954, 1034, 1316, 1383, 1581, 1905
MspA1I CMGCKG 1 cut(s) 119
MspCI CTTAAG 1 cut(s) 1382
MspI CCGG 4 cut(s) 153, 185, 323, 1504
MspR9I CCNGG 4 cut(s) 186, 730, 774, 2181
MunI CAATTG 2 cut(s) 255, 1283
Mva1269I GAATGC 2 cut(s) 1725, 1805
MvaI CCWGG 3 cut(s) 730, 774, 2181
MvnI CGCG 1 cut(s) 468
MwoI GCNNNNNNNGC 6 cut(s) 22, 91, 153, 1294, 1460, 1811
NarI GGCGCC 1 cut(s) 293
NciI CCSGG 1 cut(s) 186
NcoI CCATGG 1 cut(s) 988
NdeI CATATG 1 cut(s) 2135
NdeII GATC 8 cut(s) 105, 175, 214, 227, 1123, 1470, 1798, 2159
NlaIII CATG 8 cut(s) 247, 388, 992, 1010, 1181, 1297, 1574, 1852
NlaIV GGNNCC 6 cut(s) 168, 294, 759, 877, 1367, 2084
NmuCI GTSAC 6 cut(s) 233, 325, 335, 473, 1016, 1886
NsbI TGCGCA 1 cut(s) 965
NspI RCATGY 1 cut(s) 1010
NspV TTCGAA 2 cut(s) 444, 1096
PaeR7I CTCGAG 1 cut(s) 303
PciI ACATGT 1 cut(s) 1006
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 450
PctI GAATGC 2 cut(s) 1725, 1805
PdmI GAANNNNTTC 2 cut(s) 276, 1560
PfeI GAWTC 5 cut(s) 5, 341, 743, 940, 1166
Pfl23II CGTACG 1 cut(s) 450
PflFI GACNNNGTC 2 cut(s) 68, 1333
PflMI CCANNNNNTGG 3 cut(s) 1307, 1706, 2136
PkrI GCNGC 9 cut(s) 12, 15, 84, 158, 297, 470, 853, 1465, 2087
PleI GAGTC 7 cut(s) 59, 201, 1068, 1165, 1324, 1913, 2050
PluTI GGCGCC 1 cut(s) 296
PpsI GAGTC 7 cut(s) 59, 201, 1068, 1165, 1324, 1913, 2050
PscI ACATGT 1 cut(s) 1006
Psp124BI GAGCTC 2 cut(s) 206, 1503
Psp6I CCWGG 3 cut(s) 728, 772, 2179
PspEI GGTNACC 1 cut(s) 325
PspFI CCCAGC 2 cut(s) 1607, 2129
PspGI CCWGG 3 cut(s) 728, 772, 2179
PspLI CGTACG 1 cut(s) 450
PspN4I GGNNCC 6 cut(s) 168, 294, 759, 877, 1367, 2084
PspPI GGNCC 6 cut(s) 132, 139, 150, 166, 876, 1290
PspXI VCTCGAGB 1 cut(s) 303
PstNI CAGNNNCTG 1 cut(s) 1333
PsuI RGATCY 2 cut(s) 1123, 2159
PsyI GACNNNGTC 2 cut(s) 68, 1333
RsaI GTAC 6 cut(s) 452, 670, 759, 1410, 1681, 2176
RsaNI GTAC 6 cut(s) 451, 669, 758, 1409, 1680, 2175
SacI GAGCTC 2 cut(s) 206, 1503
SaqAI TTAA 7 cut(s) 548, 954, 1034, 1316, 1383, 1581, 1905
SatI GCNGC 9 cut(s) 11, 14, 83, 157, 296, 469, 852, 1464, 2086
Sau3AI GATC 8 cut(s) 105, 175, 214, 227, 1123, 1470, 1798, 2159
Sau96I GGNCC 6 cut(s) 132, 139, 150, 166, 876, 1290
ScaI AGTACT 1 cut(s) 1410
SchI GAGTC 7 cut(s) 59, 202, 1069, 1166, 1324, 1913, 2051
ScrFI CCNGG 4 cut(s) 186, 730, 774, 2181
SduI GDGCHC 5 cut(s) 206, 714, 1210, 1235, 1503
SfcI CTRYAG 1 cut(s) 1672
SfoI GGCGCC 1 cut(s) 294
Sfr274I CTCGAG 1 cut(s) 303
SfuI TTCGAA 2 cut(s) 444, 1096
SinI GGWCC 4 cut(s) 132, 139, 150, 166
SlaI CTCGAG 1 cut(s) 303
SmlI CTYRAG 5 cut(s) 303, 1382, 1826, 1970, 2039
SmoI CTYRAG 5 cut(s) 303, 1382, 1826, 1970, 2039
SpeI ACTAGT 1 cut(s) 2120
SspDI GGCGCC 1 cut(s) 292
SspMI CTAG 3 cut(s) 717, 1496, 2121
SstI GAGCTC 2 cut(s) 206, 1503
StyD4I CCNGG 4 cut(s) 184, 728, 772, 2179
StyI CCWWGG 2 cut(s) 879, 988
TaaI ACNGT 5 cut(s) 450, 479, 546, 1149, 1940
TaiI ACGT 2 cut(s) 501, 1488
TaqI TCGA 6 cut(s) 304, 444, 1063, 1096, 1354, 1473
TaqII GACCGA 1 cut(s) 154
TatI WGTACW 3 cut(s) 1408, 1679, 2174
TauI GCSGC 6 cut(s) 13, 16, 159, 298, 471, 2088
TfiI GAWTC 5 cut(s) 5, 341, 743, 940, 1166
Tru1I TTAA 7 cut(s) 548, 954, 1034, 1316, 1383, 1581, 1905
Tru9I TTAA 7 cut(s) 548, 954, 1034, 1316, 1383, 1581, 1905
TscAI CASTG 2 cut(s) 670, 1528
TseFI GTSAC 6 cut(s) 233, 325, 335, 473, 1016, 1886
TseI GCWGC 3 cut(s) 82, 851, 1463
Tsp45I GTSAC 6 cut(s) 233, 325, 335, 473, 1016, 1886
TspDTI ATGAA 4 cut(s) 236, 408, 1763, 2038
TspGWI ACGGA 3 cut(s) 58, 103, 124
TspRI CASTG 2 cut(s) 670, 1528
Tth111I GACNNNGTC 2 cut(s) 68, 1333
Van91I CCANNNNNTGG 3 cut(s) 1307, 1706, 2136
Vha464I CTTAAG 1 cut(s) 1382
VneI GTGCAC 1 cut(s) 1206
VpaK11BI GGWCC 4 cut(s) 132, 139, 150, 166
XapI RAATTY 6 cut(s) 350, 389, 949, 1054, 1387, 1982
XbaI TCTAGA 1 cut(s) 716
XceI RCATGY 1 cut(s) 1010
XcmI CCANNNNNNNNNTGG 1 cut(s) 1953
XhoI CTCGAG 1 cut(s) 303
XmnI GAANNNNTTC 2 cut(s) 276, 1560
XspI CTAG 3 cut(s) 717, 1496, 2121
ZrmI AGTACT 1 cut(s) 1410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.