RchiOBHm_Chr7g0235351

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000546
Physical Location & Seq
Forward (+)
60094014 .. 60094464
451 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21094

Sequence Viewer

Length: 411 bp
ATGGTCCAAAGCTTGACCGGCCGCCATTCGGTCCCCGCCGATCTCCCTCCGGGTGGGAGTCTGACGAGCTCTTTATCGGATCAGATCAACAGATCAGGTGACGATGACATGATGGAAACAATTGTTGACGATATGGAAGGTGTTCAGTCTTGGTCGGCGCCGCCCACTCGAGCTGTATTATTCTCTCCGGTGACCTCTTGTGACGAATCGCAGACATTTGATGAGTTAGATAAACTTCCGAAGAAAATCATGGAATTCTCTTCTTCTAGTTCAGATTTCTTTTCATCTCCTCCGGTTTCTCAACGGTTCGAACCGTACGATGGTTTATGGCACGGCGGTGACAATTCCTGGTTTTCTTCTCACGTTCCGCAACAACAAGGTACGAGTTGTACTTATAAGTTAGATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.89

Weight (kDa)

4.27

Isoelectric Point (pI)

72.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000546)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica MD14G1049300.v1.1
rosa_chinensis RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata RLG00000001164 RLG00000013941
rosa_multiflora Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 396
AccB1I GGYRCC 1 cut(s) 157
AciI CCGC 5 cut(s) 22, 36, 161, 336, 368
AclWI GGATC 1 cut(s) 87
AcoI YGGCCR 1 cut(s) 19
AcsI RAATTY 1 cut(s) 254
AcyI GRCGYC 1 cut(s) 158
AfaI GTAC 3 cut(s) 317, 382, 391
AfiI CCNNNNNNNGG 3 cut(s) 28, 53, 320
AjnI CCWGG 1 cut(s) 347
AleI CACNNNNGTG 1 cut(s) 336
AluBI AGCT 3 cut(s) 12, 69, 173
AluI AGCT 3 cut(s) 12, 69, 173
Alw21I GWGCWC 1 cut(s) 71
AlwI GGATC 1 cut(s) 87
Ama87I CYCGRG 1 cut(s) 168
AoxI GGCC 1 cut(s) 19
ApoI RAATTY 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 141
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 2 cut(s) 4, 31
AsuC2I CCSGG 1 cut(s) 51
AsuHPI GGTGA 3 cut(s) 110, 202, 350
AsuII TTCGAA 1 cut(s) 309
AvaI CYCGRG 1 cut(s) 168
AvaII GGWCC 2 cut(s) 4, 31
BanI GGYRCC 1 cut(s) 157
BanII GRGCYC 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 71
BccI CCATC 3 cut(s) 106, 314, 398
BceAI ACGGC 1 cut(s) 349
BciT130I CCWGG 1 cut(s) 349
BcnI CCSGG 1 cut(s) 51
BfaI CTAG 1 cut(s) 267
BfoI RGCGCY 1 cut(s) 161
BisI GCNGC 2 cut(s) 22, 161
BlsI GCNGC 2 cut(s) 23, 162
Bme1390I CCNGG 2 cut(s) 51, 349
Bme18I GGWCC 2 cut(s) 4, 31
BmeT110I CYCGRG 1 cut(s) 168
BmgT120I GGNCC 2 cut(s) 4, 31
BmiI GGNNCC 2 cut(s) 33, 159
BmrFI CCNGG 2 cut(s) 51, 349
Bpu14I TTCGAA 1 cut(s) 309
BpuMI CCSGG 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 158
BsaWI WCCGGW 2 cut(s) 187, 292
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 53, 320
Bse118I RCCGGY 1 cut(s) 17
BseBI CCWGG 1 cut(s) 349
BseLI CCNNNNNNNGG 3 cut(s) 28, 53, 320
BseRI GAGGAG 1 cut(s) 279
BseX3I CGGCCG 1 cut(s) 19
Bsh1285I CGRYCG 1 cut(s) 22
BshFI GGCC 1 cut(s) 21
BshNI GGYRCC 1 cut(s) 157
BsiEI CGRYCG 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 71
BsiHKCI CYCGRG 1 cut(s) 168
BsiSI CCGG 4 cut(s) 18, 50, 188, 293
BsiWI CGTACG 1 cut(s) 315
BslFI GGGAC 1 cut(s) 17
BslI CCNNNNNNNGG 3 cut(s) 28, 53, 320
BsmFI GGGAC 1 cut(s) 17
BsnI GGCC 1 cut(s) 21
BsoBI CYCGRG 1 cut(s) 168
Bsp119I TTCGAA 1 cut(s) 309
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 4 cut(s) 40, 79, 84, 92
BspACI CCGC 5 cut(s) 22, 36, 161, 336, 368
BspANI GGCC 1 cut(s) 21
BspLI GGNNCC 2 cut(s) 33, 159
BspPI GGATC 1 cut(s) 87
BspT104I TTCGAA 1 cut(s) 309
BspT107I GGYRCC 1 cut(s) 157
BsrFI RCCGGY 1 cut(s) 17
BssAI RCCGGY 1 cut(s) 17
BssMI GATC 4 cut(s) 40, 79, 84, 92
BssNI GRCGYC 1 cut(s) 158
Bst2UI CCWGG 1 cut(s) 349
Bst4CI ACNGT 2 cut(s) 306, 315
Bst6I CTCTTC 1 cut(s) 265
BstACI GRCGYC 1 cut(s) 158
BstBI TTCGAA 1 cut(s) 309
BstEII GGTNACC 1 cut(s) 190
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 4 cut(s) 43, 82, 87, 95
BstMBI GATC 4 cut(s) 40, 79, 84, 92
BstMCI CGRYCG 1 cut(s) 22
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstNI CCWGG 1 cut(s) 349
BstPI GGTNACC 1 cut(s) 190
BstSCI CCNGG 2 cut(s) 49, 347
BstZI CGGCCG 1 cut(s) 19
BsuRI GGCC 1 cut(s) 21
CfoI GCGC 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 17
Cfr13I GGNCC 2 cut(s) 4, 31
Csp6I GTAC 3 cut(s) 316, 381, 390
CviAII CATG 2 cut(s) 109, 250
CviJI RGCY 4 cut(s) 12, 21, 69, 173
CviKI_1 RGCY 4 cut(s) 12, 21, 69, 173
CviQI GTAC 3 cut(s) 316, 381, 390
DinI GGCGCC 1 cut(s) 159
DpnI GATC 4 cut(s) 42, 81, 86, 94
DpnII GATC 4 cut(s) 40, 79, 84, 92
EaeI YGGCCR 1 cut(s) 19
EagI CGGCCG 1 cut(s) 19
Eam1104I CTCTTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 265
Ecl136II GAGCTC 1 cut(s) 69
EclXI CGGCCG 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 71
Eco47I GGWCC 2 cut(s) 4, 31
Eco52I CGGCCG 1 cut(s) 19
Eco53kI GAGCTC 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 168
Eco91I GGTNACC 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 69
EcoO65I GGTNACC 1 cut(s) 190
EcoRI GAATTC 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 347
EcoT38I GRGCYC 1 cut(s) 71
EgeI GGCGCC 1 cut(s) 159
EheI GGCGCC 1 cut(s) 159
FaeI CATG 2 cut(s) 112, 253
FaiI YATR 5 cut(s) 110, 134, 251, 328, 396
FaqI GGGAC 1 cut(s) 17
FatI CATG 2 cut(s) 108, 249
FauI CCCGC 1 cut(s) 43
Fnu4HI GCNGC 2 cut(s) 22, 161
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 2 cut(s) 22, 161
FspBI CTAG 1 cut(s) 267
GlaI GCGC 1 cut(s) 159
GluI GCNGC 2 cut(s) 22, 161
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 1 cut(s) 21
HapII CCGG 4 cut(s) 18, 50, 188, 293
HhaI GCGC 1 cut(s) 160
Hin1I GRCGYC 1 cut(s) 158
Hin1II CATG 2 cut(s) 112, 253
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HindIII AAGCTT 1 cut(s) 10
HinfI GANTC 2 cut(s) 58, 206
HpaII CCGG 4 cut(s) 18, 50, 188, 293
HphI GGTGA 3 cut(s) 110, 202, 350
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 5 cut(s) 63, 79, 84, 240, 274
Hpy8I GTNNAC 1 cut(s) 127
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 2 cut(s) 306, 315
HpyCH4IV ACGT 1 cut(s) 363
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpySE526I ACGT 1 cut(s) 363
Hsp92I GRCGYC 1 cut(s) 158
Hsp92II CATG 2 cut(s) 112, 253
HspAI GCGC 1 cut(s) 158
KasI GGCGCC 1 cut(s) 157
Kzo9I GATC 4 cut(s) 40, 79, 84, 92
LpnPI CCDG 7 cut(s) 31, 63, 81, 201, 306, 334, 361
MaeI CTAG 1 cut(s) 267
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 4 cut(s) 98, 190, 200, 338
MalI GATC 4 cut(s) 42, 81, 86, 94
MboI GATC 4 cut(s) 40, 79, 84, 92
MboII GAAGA 4 cut(s) 252, 253, 255, 348
MfeI CAATTG 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 3 cut(s) 120, 254, 343
Mly113I GGCGCC 1 cut(s) 158
MlyI GAGTC 1 cut(s) 67
MnlI CCTC 3 cut(s) 57, 205, 300
MroXI GAANNNNTTC 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 336
MspI CCGG 4 cut(s) 18, 50, 188, 293
MspR9I CCNGG 2 cut(s) 51, 349
MunI CAATTG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 349
MwoI GCNNNNNNNGC 1 cut(s) 18
NarI GGCGCC 1 cut(s) 158
NciI CCSGG 1 cut(s) 51
NdeII GATC 4 cut(s) 40, 79, 84, 92
NlaIII CATG 2 cut(s) 112, 253
NlaIV GGNNCC 2 cut(s) 33, 159
NmuCI GTSAC 4 cut(s) 98, 190, 200, 338
NspV TTCGAA 1 cut(s) 309
OliI CACNNNNGTG 1 cut(s) 336
PaeR7I CTCGAG 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PdmI GAANNNNTTC 1 cut(s) 141
PfeI GAWTC 1 cut(s) 206
Pfl23II CGTACG 1 cut(s) 315
PkrI GCNGC 2 cut(s) 23, 162
PleI GAGTC 1 cut(s) 66
PluTI GGCGCC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 66
PsiI TTATAA 1 cut(s) 396
Psp124BI GAGCTC 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 347
PspEI GGTNACC 1 cut(s) 190
PspGI CCWGG 1 cut(s) 347
PspLI CGTACG 1 cut(s) 315
PspN4I GGNNCC 2 cut(s) 33, 159
PspPI GGNCC 2 cut(s) 4, 31
PspXI VCTCGAGB 1 cut(s) 168
RsaI GTAC 3 cut(s) 317, 382, 391
RsaNI GTAC 3 cut(s) 316, 381, 390
RseI CAYNNNNRTG 1 cut(s) 336
SacI GAGCTC 1 cut(s) 71
SatI GCNGC 2 cut(s) 22, 161
Sau3AI GATC 4 cut(s) 40, 79, 84, 92
Sau96I GGNCC 2 cut(s) 4, 31
SchI GAGTC 1 cut(s) 67
ScrFI CCNGG 2 cut(s) 51, 349
SduI GDGCHC 1 cut(s) 71
SetI ASST 8 cut(s) 14, 71, 100, 142, 175, 197, 366, 382
SfoI GGCGCC 1 cut(s) 159
Sfr274I CTCGAG 1 cut(s) 168
SfuI TTCGAA 1 cut(s) 309
SinI GGWCC 2 cut(s) 4, 31
SlaI CTCGAG 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
Sse9I AATT 3 cut(s) 120, 254, 343
SsiI CCGC 5 cut(s) 22, 36, 161, 336, 368
SspDI GGCGCC 1 cut(s) 157
SspMI CTAG 1 cut(s) 267
SstI GAGCTC 1 cut(s) 71
StyD4I CCNGG 2 cut(s) 49, 347
TaaI ACNGT 2 cut(s) 306, 315
TaiI ACGT 1 cut(s) 366
TaqI TCGA 2 cut(s) 169, 309
TaqII GACCGA 1 cut(s) 19
TasI AATT 3 cut(s) 120, 254, 343
TatI WGTACW 1 cut(s) 389
TauI GCSGC 2 cut(s) 24, 163
TfiI GAWTC 1 cut(s) 206
TseFI GTSAC 4 cut(s) 98, 190, 200, 338
Tsp45I GTSAC 4 cut(s) 98, 190, 200, 338
TspDTI ATGAA 1 cut(s) 273
VpaK11BI GGWCC 2 cut(s) 4, 31
XapI RAATTY 1 cut(s) 254
XhoI CTCGAG 1 cut(s) 168
XmnI GAANNNNTTC 1 cut(s) 141
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.