FvH4_5g34700

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000546
Physical Location & Seq
Forward (+)
25408957 .. 25413765
4809 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g34700.t4

Sequence Viewer

Length: 2037 bp
ATGGATTCGCCGCCGGAAAAGGATGACCGTTCCCATCGCTGGCGCTCTTCTACTCTCAAACTCAACAAAGACTCCGTCAAAGTGAAGAAGCGAAGGGCCCGTACCGCTGTGTACACCGTTGAAACGAGCGAATTTAGGTCCTTGGTCCAGAGCCTCACCGGCCCGTCGCGCTCTCCGCCTCGCACACTCAGCTCCACCGGAAAGAGCCTTCCTTTACCGGATCAGAAGCATTTGGCCACTAGGTCAGCTACATCTGCTAGTACCATCACGTTGGACGACGACATGGATAACGAGCAAGGAAGAGTTATTTATGCAGATAAAGAACCCGACGGTTTACCGGACGAGTTAAAGGGGTTATCTATGTATTTCTCTCTCTTCCCATCAGATTATGAGTTTAGAAGAGATGAGTTGGTTCAAATGTGGATGGCTGAAGGCTTTATTGACGAGAGCCAAAGAAAGACAACGGAGGACATTGGTTGTGCTTATTTCAATTCCTTAGAAAAGATAGGCTTTCTTGTGCCCTCTAGATGTGATTTCAGTGTGGATTTTGATTCAGTGTGTTCGGTACCCTCGTATAACCCTGGAAAATTGTTGTTCAAGGTGAATCCTATCAAGCTTTCAGAGTTGATAAACACAACTGCTCCGGTGGATTATTTCGCTGCTGTGGCTGGTAGTTTGGATGGAGACTTGGAATTGACACAGCATTTGTCTTTGAATTGTAAGGACATTGATCAGATGACTTTTGGAATTCTCAAAAATTTTAAGCATCTGCGCACGCTCCTACTCCTCTCTGGCCATGAGTCTTCCATCAAACATATTCCTCGTGATCTGTTTTTGAACTTAAAGGATTTGAGAACACTGAATTTGAGTCGAACACTTATTTCGGAGGTGCCAAGTTCCATTCGAAATATGAAATCATTACGATATTTGGATCTCTCCAATACTCGCGTTACGCAGTTGCCAGAGTCAATAGATTCTCTTCGCCATTTGCAGACTATAAAACTAAGAGGCTGTGTGCACTTCCTTCAGTTGCCAAAAGGCATGAAGAAGCTGATCAATCTACGACATATGGAATTGGATATCATTCGGCAATTACGTGCCATGCCCCCATTTTTAGGAAACTTAACTAACCTTCTGACTTTGTCAGCATTTCTAGTTGGTCGAGAGGAGGGGTGTCGGATTGGAGAGCTTCAGAATTTGAATAATCTTAGGGGAGTACTTCGCATTTCAAGGCTTGAAAATGTGTCAGATAAGGATGAGGCTAAGGAAGCTGCTTTGATTAATAAGCAATACCTCCAAAGGCTAGAGCTTCGTTGGAGTAATGTGTTCATAGAGAAAATAGAGGAGCAACAGAAAATCCTTGATTGTCTTCAACCCCATGCTGGTCTTAAAGAGTTACAGATACAACACTATGCCGGGTCAACACTTCCAACTTGGATAAGCCATCCATCTCTTTCTGCACTTGTTGTTCTTACTCTATACAGATGTATTAATTGTCAACTTCTCCCGTCTATTGGCCAGTTACAAATGCTCAAATCTCTTTCTATTATAGAGATGAATGAGGTGAAAGAAATCAACCATCAGTTTTATGGAGGTGGACTAGTTGATCAAGCATTCCATGCATTTCCAAAACTTGAGATATTAGAAGTTGACATCATGTTCAATTTGAAAGAGTGGAAGGAAGTAAAGACAGGTGACTTTCCATCCCTACTTAAACTCACAATGGACTCTTGCCCCGAACTTGACAGTCTTCCATCACTTTCTTGGCTGAAATCCCTCAAGCATTTGGAGTTCAGGCGTTGTCCAAAGCTTCTGTCCTTACCTTCTGATGGACTACCAACTTCACTTGAGTCTTTCATAGTAATAGATTGCCCTGAACTGAAAGAATGGTGCCACAAGGTGGAAGGTGAAGATTGGAGTAAAATATACCATGTCCCCAGCATATGGTTTGATTGTGAAGAGGTAAGATCCAAGTCCCATCGTAGGCCTGGAACATCAGGAGAGATTTCTGAGGTGAATATGGAATTGGATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 ko04016 ko04075 ko04931 map04014 map04016 map04075 map04931
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

679

Amino Acids

77.26

Weight (kDa)

6.44

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 5 - 53 5.4e-16 Disease resistance protein Winged helix domain
LRR_8 PF13855 147 - 196 2.1e-08 Leucine rich repeat
LRR_4 PF12799 164 - 201 4.7e-06 Leucine Rich repeats (2 copies)
LRR_14 PF23598 180 - 478 3.3e-28 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 274 - 399 1.2e-39 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000546)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica MD14G1049300.v1.1
rosa_chinensis RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata RLG00000001164 RLG00000013941
rosa_multiflora Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 773
Acc65I GGTACC 1 cut(s) 565
AccB1I GGYRCC 3 cut(s) 565, 889, 1890
AccB7I CCANNNNNTGG 2 cut(s) 1900, 1944
AccII CGCG 2 cut(s) 169, 948
AciI CCGC 3 cut(s) 11, 105, 176
AclWI GGATC 3 cut(s) 228, 939, 1962
AcoI YGGCCR 3 cut(s) 234, 793, 1516
AcsI RAATTY 5 cut(s) 131, 747, 757, 862, 1195
AcuI CTGAAG 3 cut(s) 450, 1010, 1175
AdeI CACNNNGTG 1 cut(s) 1900
AfaI GTAC 5 cut(s) 103, 113, 262, 567, 1218
AfiI CCNNNNNNNGG 8 cut(s) 39, 1115, 1382, 1514, 1829, 1900, 1944, 1983
AhlI ACTAGT 1 cut(s) 1600
AjnI CCWGG 2 cut(s) 580, 1987
AjuI GAANNNNNNNTTGG 1 cut(s) 2009
AluBI AGCT 8 cut(s) 192, 248, 616, 1051, 1189, 1271, 1309, 1810
AluI AGCT 8 cut(s) 192, 248, 616, 1051, 1189, 1271, 1309, 1810
Alw21I GWGCWC 1 cut(s) 1020
Alw26I GTCTC 1 cut(s) 678
Alw44I GTGCAC 1 cut(s) 1016
AlwI GGATC 3 cut(s) 228, 939, 1962
AoxI GGCC 6 cut(s) 96, 160, 234, 793, 1516, 1985
ApaI GGGCCC 1 cut(s) 100
ApaLI GTGCAC 1 cut(s) 1016
ApeKI GCWGC 2 cut(s) 659, 1271
ApoI RAATTY 5 cut(s) 131, 747, 757, 862, 1195
ArsI GACNNNNNNTTYG 6 cut(s) 60, 92, 688, 720, 1799, 1831
AseI ATTAAT 2 cut(s) 1281, 1491
Asp718I GGTACC 1 cut(s) 565
AspLEI GCGC 3 cut(s) 45, 171, 774
AspS9I GGNCC 5 cut(s) 96, 97, 138, 145, 161
AsuC2I CCSGG 1 cut(s) 1417
AsuHPI GGTGA 6 cut(s) 148, 613, 1576, 1706, 1919, 2026
AsuII TTCGAA 1 cut(s) 904
AvaII GGWCC 2 cut(s) 138, 145
BaeGI GKGCMC 3 cut(s) 100, 522, 1020
BaeI ACNNNNGTAYC 2 cut(s) 557, 590
BalI TGGCCA 3 cut(s) 236, 795, 1518
BanI GGYRCC 3 cut(s) 565, 889, 1890
BanII GRGCYC 1 cut(s) 100
BarI GAAGNNNNNNTAC 2 cut(s) 85, 117
BauI CACGAG 1 cut(s) 822
BbsI GAAGAC 3 cut(s) 795, 1361, 1742
Bbv12I GWGCWC 1 cut(s) 1020
BbvI GCAGC 2 cut(s) 646, 1258
BciT130I CCWGG 2 cut(s) 582, 1989
BclI TGATCA 3 cut(s) 730, 1053, 1606
BcnI CCSGG 1 cut(s) 1417
BcoDI GTCTC 1 cut(s) 678
BcuI ACTAGT 1 cut(s) 1600
BfaI CTAG 6 cut(s) 240, 258, 525, 1154, 1304, 1601
BfoI RGCGCY 1 cut(s) 46
BglI GCCNNNNNGGC 1 cut(s) 159
BisI GCNGC 3 cut(s) 11, 660, 1272
BlsI GCNGC 3 cut(s) 12, 661, 1273
BmcAI AGTACT 1 cut(s) 1218
Bme1390I CCNGG 3 cut(s) 582, 1417, 1989
Bme18I GGWCC 2 cut(s) 138, 145
BmgT120I GGNCC 5 cut(s) 96, 97, 138, 145, 161
BmiI GGNNCC 4 cut(s) 98, 567, 891, 1892
BmrFI CCNGG 3 cut(s) 582, 1417, 1989
BmsI GCATC 1 cut(s) 775
BpiI GAAGAC 3 cut(s) 795, 1361, 1742
Bpu10I CCTNAGC 1 cut(s) 1263
Bpu14I TTCGAA 1 cut(s) 904
BpuEI CTTGAG 3 cut(s) 1655, 1763, 1868
BpuMI CCSGG 1 cut(s) 1417
BsaAI YACGTR 1 cut(s) 1097
BsaJI CCNNGG 2 cut(s) 141, 580
BsaWI WCCGGW 4 cut(s) 197, 217, 337, 643
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 625, 655
Bsc4I CCNNNNNNNGG 8 cut(s) 39, 1115, 1382, 1514, 1829, 1900, 1944, 1983
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 1519
BseBI CCWGG 2 cut(s) 582, 1989
BseDI CCNNGG 2 cut(s) 141, 580
BseGI GGATG 7 cut(s) 28, 429, 685, 1261, 1444, 1703, 2035
BseLI CCNNNNNNNGG 8 cut(s) 39, 1115, 1382, 1514, 1829, 1900, 1944, 1983
BseMII CTCAG 2 cut(s) 202, 2001
BseNI ACTGG 1 cut(s) 1519
BseRI GAGGAG 3 cut(s) 776, 1181, 1358
BseSI GKGCMC 3 cut(s) 100, 522, 1020
BseXI GCAGC 2 cut(s) 646, 1258
BseYI CCCAGC 1 cut(s) 1937
BsgI GTGCAG 1 cut(s) 1443
Bsh1236I CGCG 2 cut(s) 169, 948
BshFI GGCC 6 cut(s) 98, 162, 236, 795, 1518, 1987
BshNI GGYRCC 3 cut(s) 565, 889, 1890
BsiHKAI GWGCWC 1 cut(s) 1020
BsiSI CCGG 7 cut(s) 14, 159, 198, 218, 338, 644, 1416
BslFI GGGAC 2 cut(s) 1919, 1960
BslI CCNNNNNNNGG 8 cut(s) 39, 1115, 1382, 1514, 1829, 1900, 1944, 1983
BsmAI GTCTC 1 cut(s) 678
BsmFI GGGAC 2 cut(s) 1919, 1960
BsmI GAATGC 1 cut(s) 1613
BsnI GGCC 6 cut(s) 98, 162, 236, 795, 1518, 1987
Bsp119I TTCGAA 1 cut(s) 904
Bsp120I GGGCCC 1 cut(s) 96
Bsp1286I GDGCHC 3 cut(s) 100, 522, 1020
Bsp1407I TGTACA 1 cut(s) 111
Bsp143I GATC 7 cut(s) 220, 730, 826, 931, 1053, 1606, 1967
BspACI CCGC 3 cut(s) 11, 105, 176
BspANI GGCC 6 cut(s) 98, 162, 236, 795, 1518, 1987
BspCNI CTCAG 2 cut(s) 201, 2002
BspFNI CGCG 2 cut(s) 169, 948
BspLI GGNNCC 4 cut(s) 98, 567, 891, 1892
BspPI GGATC 3 cut(s) 228, 939, 1962
BspQI GCTCTTC 1 cut(s) 52
BspT104I TTCGAA 1 cut(s) 904
BspT107I GGYRCC 3 cut(s) 565, 889, 1890
BsrFI RCCGGY 1 cut(s) 158
BsrGI TGTACA 1 cut(s) 111
BsrI ACTGG 1 cut(s) 1519
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 2 cut(s) 141, 580
BssMI GATC 7 cut(s) 220, 730, 826, 931, 1053, 1606, 1967
BssSI CACGAG 1 cut(s) 822
BssT1I CCWWGG 1 cut(s) 141
Bst2BI CACGAG 1 cut(s) 822
Bst2UI CCWGG 2 cut(s) 582, 1989
Bst4CI ACNGT 4 cut(s) 29, 118, 332, 1748
Bst6I CTCTTC 6 cut(s) 52, 295, 380, 394, 984, 1953
BstAPI GCANNNNNTGC 1 cut(s) 1619
BstAUI TGTACA 1 cut(s) 111
BstBAI YACGTR 1 cut(s) 1097
BstBI TTCGAA 1 cut(s) 904
BstC8I GCNNGC 2 cut(s) 41, 776
BstDEI CTNAG 6 cut(s) 188, 496, 1004, 1208, 1263, 2010
BstF5I GGATG 7 cut(s) 28, 429, 685, 1261, 1444, 1703, 2035
BstFNI CGCG 2 cut(s) 169, 948
BstH2I RGCGCY 1 cut(s) 46
BstHHI GCGC 3 cut(s) 45, 171, 774
BstKTI GATC 7 cut(s) 223, 733, 829, 934, 1056, 1609, 1970
BstMAI GTCTC 1 cut(s) 678
BstMBI GATC 7 cut(s) 220, 730, 826, 931, 1053, 1606, 1967
BstMWI GCNNNNNNNGC 9 cut(s) 104, 159, 168, 175, 189, 254, 665, 1268, 1619
BstNI CCWGG 2 cut(s) 582, 1989
BstSCI CCNGG 3 cut(s) 580, 1415, 1987
BstSLI GKGCMC 3 cut(s) 100, 522, 1020
BstUI CGCG 2 cut(s) 169, 948
BstV1I GCAGC 2 cut(s) 646, 1258
BstV2I GAAGAC 3 cut(s) 795, 1361, 1742
BstX2I RGATCY 2 cut(s) 931, 1967
BstXI CCANNNNNNTGG 1 cut(s) 271
BstYI RGATCY 2 cut(s) 931, 1967
BsuRI GGCC 6 cut(s) 98, 162, 236, 795, 1518, 1987
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 7 cut(s) 28, 429, 685, 1261, 1444, 1703, 2035
BtsIMutI CAGTG 3 cut(s) 544, 561, 857
Cac8I GCNNGC 2 cut(s) 41, 776
CfoI GCGC 3 cut(s) 45, 171, 774
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 5 cut(s) 96, 97, 138, 145, 161
Csp6I GTAC 5 cut(s) 102, 112, 261, 566, 1217
CviAII CATG 8 cut(s) 283, 797, 1042, 1102, 1379, 1619, 1657, 1931
CviQI GTAC 5 cut(s) 102, 112, 261, 566, 1217
DdeI CTNAG 6 cut(s) 188, 496, 1004, 1208, 1263, 2010
DpnI GATC 7 cut(s) 222, 732, 828, 933, 1055, 1608, 1969
DpnII GATC 7 cut(s) 220, 730, 826, 931, 1053, 1606, 1967
DraIII CACNNNGTG 1 cut(s) 1900
EaeI YGGCCR 3 cut(s) 234, 793, 1516
Eam1104I CTCTTC 6 cut(s) 52, 295, 380, 394, 984, 1953
EarI CTCTTC 6 cut(s) 52, 295, 380, 394, 984, 1953
EciI GGCGGA 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 141
Eco147I AGGCCT 1 cut(s) 1987
Eco24I GRGCYC 1 cut(s) 100
Eco32I GATATC 1 cut(s) 1081
Eco47I GGWCC 2 cut(s) 138, 145
Eco57I CTGAAG 3 cut(s) 450, 1010, 1175
EcoO109I RGGNCCY 2 cut(s) 96, 138
EcoRI GAATTC 1 cut(s) 747
EcoRII CCWGG 2 cut(s) 580, 1987
EcoRV GATATC 1 cut(s) 1081
EcoT14I CCWWGG 1 cut(s) 141
EcoT22I ATGCAT 1 cut(s) 1624
EcoT38I GRGCYC 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 8 cut(s) 286, 800, 1045, 1105, 1382, 1622, 1660, 1934
FalI AAGNNNNNCTT 2 cut(s) 494, 526
FaqI GGGAC 2 cut(s) 1919, 1960
FatI CATG 8 cut(s) 282, 796, 1041, 1101, 1378, 1618, 1656, 1930
FauNDI CATATG 2 cut(s) 1068, 1943
FbaI TGATCA 3 cut(s) 730, 1053, 1606
Fnu4HI GCNGC 3 cut(s) 11, 660, 1272
FokI GGATG 6 cut(s) 35, 436, 692, 1268, 1431, 1690
FriOI GRGCYC 1 cut(s) 100
Fsp4HI GCNGC 3 cut(s) 11, 660, 1272
FspBI CTAG 6 cut(s) 240, 258, 525, 1154, 1304, 1601
FspI TGCGCA 1 cut(s) 773
GlaI GCGC 3 cut(s) 44, 170, 773
GluI GCNGC 3 cut(s) 11, 660, 1272
GsaI CCCAGC 1 cut(s) 1941
HaeII RGCGCY 1 cut(s) 46
HaeIII GGCC 6 cut(s) 98, 162, 236, 795, 1518, 1987
HapII CCGG 7 cut(s) 14, 159, 198, 218, 338, 644, 1416
HhaI GCGC 3 cut(s) 45, 171, 774
Hin1II CATG 8 cut(s) 286, 800, 1045, 1105, 1382, 1622, 1660, 1934
Hin6I GCGC 3 cut(s) 43, 169, 772
HinP1I GCGC 3 cut(s) 43, 169, 772
HincII GTYRAC 3 cut(s) 1422, 1499, 1651
HindII GTYRAC 3 cut(s) 1422, 1499, 1651
HindIII AAGCTT 2 cut(s) 614, 1808
HpaII CCGG 7 cut(s) 14, 159, 198, 218, 338, 644, 1416
HphI GGTGA 6 cut(s) 148, 613, 1576, 1706, 1919, 2026
Hpy166II GTNNAC 8 cut(s) 112, 114, 335, 1018, 1422, 1499, 1598, 1651
Hpy188III TCNNGA 5 cut(s) 148, 525, 824, 1163, 1998
Hpy8I GTNNAC 8 cut(s) 112, 114, 335, 1018, 1422, 1499, 1598, 1651
Hpy99I CGWCG 3 cut(s) 169, 281, 332
HpyAV CCTTC 8 cut(s) 87, 218, 425, 1034, 1142, 1672, 1833, 1898
HpyCH4III ACNGT 4 cut(s) 29, 118, 332, 1748
HpyCH4IV ACGT 2 cut(s) 269, 1096
HpyCH4V TGCA 5 cut(s) 314, 991, 1018, 1460, 1622
HpyF10VI GCNNNNNNNGC 9 cut(s) 104, 159, 168, 175, 189, 254, 665, 1268, 1619
HpyF3I CTNAG 6 cut(s) 188, 496, 1004, 1208, 1263, 2010
HpySE526I ACGT 2 cut(s) 269, 1096
Hsp92II CATG 8 cut(s) 286, 800, 1045, 1105, 1382, 1622, 1660, 1934
HspAI GCGC 3 cut(s) 43, 169, 772
KpnI GGTACC 1 cut(s) 569
Ksp22I TGATCA 3 cut(s) 730, 1053, 1606
Kzo9I GATC 7 cut(s) 220, 730, 826, 931, 1053, 1606, 1967
LguI GCTCTTC 1 cut(s) 52
LmnI GCTCC 4 cut(s) 197, 646, 783, 1345
Lsp1109I GCAGC 2 cut(s) 646, 1258
LweI GCATC 1 cut(s) 775
MaeI CTAG 6 cut(s) 240, 258, 525, 1154, 1304, 1601
MaeII ACGT 2 cut(s) 269, 1096
MaeIII GTNAC 4 cut(s) 949, 1395, 1521, 1694
MalI GATC 7 cut(s) 222, 732, 828, 933, 1055, 1608, 1969
MboI GATC 7 cut(s) 220, 730, 826, 931, 1053, 1606, 1967
MflI RGATCY 2 cut(s) 931, 1967
MhlI GDGCHC 3 cut(s) 100, 522, 1020
MlsI TGGCCA 3 cut(s) 236, 795, 1518
MluNI TGGCCA 3 cut(s) 236, 795, 1518
MlyI GAGTC 6 cut(s) 65, 809, 877, 974, 1721, 1859
MmeI TCCRAC 4 cut(s) 252, 1157, 1295, 1454
Mox20I TGGCCA 3 cut(s) 236, 795, 1518
Mph1103I ATGCAT 1 cut(s) 1624
MscI TGGCCA 3 cut(s) 236, 795, 1518
MseI TTAA 8 cut(s) 347, 762, 842, 1124, 1281, 1389, 1491, 1713
Msp20I TGGCCA 3 cut(s) 236, 795, 1518
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 7 cut(s) 14, 159, 198, 218, 338, 644, 1416
MspR9I CCNGG 3 cut(s) 582, 1417, 1989
Mva1269I GAATGC 1 cut(s) 1613
MvaI CCWGG 2 cut(s) 582, 1989
MvnI CGCG 2 cut(s) 169, 948
MwoI GCNNNNNNNGC 9 cut(s) 104, 159, 168, 175, 189, 254, 665, 1268, 1619
NciI CCSGG 1 cut(s) 1417
NdeI CATATG 2 cut(s) 1068, 1943
NdeII GATC 7 cut(s) 220, 730, 826, 931, 1053, 1606, 1967
NlaIII CATG 8 cut(s) 286, 800, 1045, 1105, 1382, 1622, 1660, 1934
NlaIV GGNNCC 4 cut(s) 98, 567, 891, 1892
NmuCI GTSAC 1 cut(s) 1694
NsbI TGCGCA 1 cut(s) 773
NsiI ATGCAT 1 cut(s) 1624
NspV TTCGAA 1 cut(s) 904
PceI AGGCCT 1 cut(s) 1987
PciSI GCTCTTC 1 cut(s) 52
PcsI WCGNNNNNNNCGW 2 cut(s) 569, 1093
PctI GAATGC 1 cut(s) 1613
PfeI GAWTC 4 cut(s) 5, 551, 604, 974
PflFI GACNNNGTC 2 cut(s) 74, 1141
PflMI CCANNNNNTGG 2 cut(s) 1900, 1944
PkrI GCNGC 3 cut(s) 12, 661, 1273
PleI GAGTC 6 cut(s) 65, 808, 876, 973, 1721, 1858
PpsI GAGTC 6 cut(s) 65, 808, 876, 973, 1721, 1858
Ppu21I YACGTR 1 cut(s) 1097
PpuMI RGGWCCY 1 cut(s) 138
PshBI ATTAAT 2 cut(s) 1281, 1491
Psp5II RGGWCCY 1 cut(s) 138
Psp6I CCWGG 2 cut(s) 580, 1987
PspFI CCCAGC 1 cut(s) 1937
PspGI CCWGG 2 cut(s) 580, 1987
PspN4I GGNNCC 4 cut(s) 98, 567, 891, 1892
PspOMI GGGCCC 1 cut(s) 96
PspPI GGNCC 5 cut(s) 96, 97, 138, 145, 161
PspPPI RGGWCCY 1 cut(s) 138
PsuI RGATCY 2 cut(s) 931, 1967
PsyI GACNNNGTC 2 cut(s) 74, 1141
RsaI GTAC 5 cut(s) 103, 113, 262, 567, 1218
RsaNI GTAC 5 cut(s) 102, 112, 261, 566, 1217
SapI GCTCTTC 1 cut(s) 52
SaqAI TTAA 8 cut(s) 347, 762, 842, 1124, 1281, 1389, 1491, 1713
SatI GCNGC 3 cut(s) 11, 660, 1272
Sau3AI GATC 7 cut(s) 220, 730, 826, 931, 1053, 1606, 1967
Sau96I GGNCC 5 cut(s) 96, 97, 138, 145, 161
ScaI AGTACT 1 cut(s) 1218
SchI GAGTC 6 cut(s) 65, 809, 877, 974, 1721, 1859
ScrFI CCNGG 3 cut(s) 582, 1417, 1989
SduI GDGCHC 3 cut(s) 100, 522, 1020
SfaNI GCATC 1 cut(s) 775
SfuI TTCGAA 1 cut(s) 904
SinI GGWCC 2 cut(s) 138, 145
SmlI CTYRAG 3 cut(s) 1634, 1778, 1847
SmoI CTYRAG 3 cut(s) 1634, 1778, 1847
SpeI ACTAGT 1 cut(s) 1600
SseBI AGGCCT 1 cut(s) 1987
SsiI CCGC 3 cut(s) 11, 105, 176
SspMI CTAG 6 cut(s) 240, 258, 525, 1154, 1304, 1601
StuI AGGCCT 1 cut(s) 1987
StyD4I CCNGG 3 cut(s) 580, 1415, 1987
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 4 cut(s) 29, 118, 332, 1748
TaiI ACGT 2 cut(s) 272, 1099
TaqI TCGA 3 cut(s) 871, 904, 1162
TatI WGTACW 2 cut(s) 111, 1216
TauI GCSGC 1 cut(s) 13
TfiI GAWTC 4 cut(s) 5, 551, 604, 974
Tru1I TTAA 8 cut(s) 347, 762, 842, 1124, 1281, 1389, 1491, 1713
Tru9I TTAA 8 cut(s) 347, 762, 842, 1124, 1281, 1389, 1491, 1713
TscAI CASTG 3 cut(s) 544, 561, 864
TseFI GTSAC 1 cut(s) 1694
TseI GCWGC 2 cut(s) 659, 1271
Tsp45I GTSAC 1 cut(s) 1694
TspDTI ATGAA 5 cut(s) 926, 1058, 1318, 1571, 1846
TspGWI ACGGA 2 cut(s) 64, 479
TspRI CASTG 3 cut(s) 544, 561, 864
Tth111I GACNNNGTC 2 cut(s) 74, 1141
Van91I CCANNNNNTGG 2 cut(s) 1900, 1944
VneI GTGCAC 1 cut(s) 1016
VpaK11BI GGWCC 2 cut(s) 138, 145
VspI ATTAAT 2 cut(s) 1281, 1491
XapI RAATTY 5 cut(s) 131, 747, 757, 862, 1195
XbaI TCTAGA 1 cut(s) 524
XcmI CCANNNNNNNNNTGG 3 cut(s) 1586, 1761, 1985
XspI CTAG 6 cut(s) 240, 258, 525, 1154, 1304, 1601
ZrmI AGTACT 1 cut(s) 1218
Zsp2I ATGCAT 1 cut(s) 1624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.