Rroxscaffold_3G00226120

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000546
Physical Location & Seq
Reverse (-)
9559197 .. 9566262
7066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00226120.1

Sequence Viewer

Length: 3048 bp
ATGGAATGGCCCGGGAGTTCAAAACCCGAGGAAGTGAAGCACCCAAAGGAGGTCGAGGAAGAGGAGAAATTTAAGGTTGGTCTGCATTCAGGACGGCTTAAGCCGCCGCCGCGGATGAGTGTTCCGGTGATTGACAATGCATCCTCGACATGGGACATTATGCGGGGCTTAGGGCCCCAAGGTGAAACTTCTCATGAAGAAGTAGAAGAAGAGGATAATTTGATTACTTCTGATGATGAAGAAGATCATATTTTGATTAAAGAGATTGTATCGAGCTCCGGGTATTCTTCTACTACTTGGAATGACGATGACTCTTCTAGCACTACCACAGACCCCTCCACTATTTCTTCTTGGGAAAAGGAAACCTCTCGCGGGTATTTACCCCTGTATGAAGGAATTTCAGACAGTAAGGTAACTAAAACGATGGATCCCCTGAAGACCCGACAGAAGCCAAAGTTGGTTAGGTGCAATGCGCGGAAGTACATTATTGACTATGATGCCGTTACATCGTCTTCCTCCTCGCTCTGCCACCACTCTGCGGGGTCACCACTCTACTCAGGCTCGGTCAATATTTCAGACCGGACGAGCTTCCAAGTAGAAGAAATCGACGGTGAGTTCGAACAGATATGCAAGGAGTTGGGATTCTCCTGCCCTGAATCCTTGGAATTCCACTCGACGAACTCGGAATTGAAGCTAAAGGAGAACTGCAATCGCAAAGAAATGGAAGAAGTAGAAATTGATAAAAGAGCTGATGAAGAAACTAATTTGAGAGCAGAAGAAAACTTCAAATTACCAGGAGTATTACATAATAGCGCTTCTTCTTTTATGCATTCAGAACTGTTGGCAATTGAGCCCGACTCGTTCATTCCATTACAAACCACTGGTGTCTCTCTGCGCTTGATTGGACAACTTCCTCGTAATTTTTTGTTGAACTTCAAGTTCTTGACTGCCTTGCATCTTAGTCGAAAGCTGGATTTTGATTTGCCAAGTTCAATTGGGGATGTAAAATCCTTACGATGTCTTGATGTCTCATATACACCAATCTCATGGTTGCCCGAATCAATAGGTTTACTTCAAAAGTTACAGACTCTAAAACTCAGAAGTTGTAGAAACCTCGTTCAATTGCCTGAATCAATTACTTCTCTTGATGAGTTACAGACCTTACATCTCAGAGGTTGTGTCAACCTTGTTGCTTTACCTAAGGGAATAAAGGTACTAATAAAGCTGCGTGATCTTGATGTTATTAACTGTACGAAATTGAAACTTTCAGGGGAGCCAAATGAGAAGCTGATTTCTTCAGAAATAAATTTGTCAGAGTCATTGGAATTGAAGGAAAGCTATGCAAATTTGCAAGAAAAGGTTGTGCATGAAGATGAAGAATATGACAGTCTACCCAAACAATTAAAAAGGTTATGTCTGTATTGTTCTCTCTTTCCATCACATTATGAGTTTAGAAGAGATGAGTTGGTTCAAATGTGGATAGCTGAAGGCCTTATTGAAGAGATCCACGGAGGGGTAATGGAGGATATTGGTGGTGAGTATTTCATGTCTTTGCAGAACAAAAGTTTTCTTGTGCCTTCAAGATGTGACTACAGAGTGGATTTTGATTCGGTATTTTCGGTGCCCATTTATAATCCTGGCCACTTATTATACAAAGGAAATCCACTCAAGCTTTCACGTTTGGCAAGGACAATTGCTCCGTTTGAGTATTTCGTAGCTGTGGATGGTAGGTTGGATGGTGCCTTGGAAATGACACAGCATTTGTCTTTAATTTGCAAAGACACTGATGAGATGACTTTTGGGGTTCTTAAAAAATTTAAGCATTTGCGTACACTTCTTGTGCTTGCTGGTTGTGGATCTTCCATCAAATATGTTCCTCGTGATCTGTTTTTGAGCTTAAGGGAATTGAGAACACTGAATTTGAGTCGAACACTCGTCTCTGAATTGCCAAGTTCCATTCGAAATGCAAAGTCATTACGATACCTTGATCTCTCCAATACTCTTATTACAAGGTTGCCGGAATCAATAGATTCTCTTCACGCTTTACAGACAGTAAGACTCAGAGGTTGTGTTCACTTTCTTCAATTACCAAAGGGGATGAAGAAGCTAATCAATCTACGACATATCGATTTGGATATCATTCGACAGTTAAGGTCCATGCCTCCCCATTTGGGAAGCTTAACCAACCTTCAGACTTTGTCAGCATTTCTTGTTGGTCGAGATGCTGGGTGCCATATAGGAGAGCTTAAGAATTTGAATGATCTCAGAGGAGTACTTCGCATTTCAAGGCTTGAAAATGTGTCATGCCAGGAAGAGGCTAAGGCAGCTGCTTTGATCGAAAAGATATACCTGCAAAGGTTGGAGCTCCGCTGGAGTAGTGTGTTCGCCGAGAATACGGAAGAGCAAGAGAAAATTCTTGAATGTCTTCAACCCCATGCTGGCCTTAAAGAGCTACAAATACAACAATATGCCGGGTCAAGACTTCCAACTTGGATTAGCAATCCATGTTTTACTGAACTTATTGTTCTTACTCTCTACAGATGCACACACTGTGAGCTTCTCCCATCTATTGGGCAGTTACCAATGCTAAAGTCTCTTTCTATTATAGAAATGAATGAGGTGAAAGAAATCAACTACCAGTTTTTGGGAAAGAAAAACCCAGTTGATCAAGGGTTTCATGCATTTTCGAAACTGGAGATACTAGAAGTTGACATCATGCTCCATTTGAAACTGTGGAAGGATGTAAACATTGGTGACTTACCTTCCTTACTTAAACTCACAGTTGATTCTTGCCCTGAACTTACCACTCTTCCATCACTGTCTTGGCTCAAATCCCTCAAGCATTTGGAACTCAGGCGCTGTCCAAAAATTCTGACCTGGCCTTGTGATGGACTACCAGCATCACTTGAGTCTTTCATAGTAATAGATTGCCCGGAACTGAAAGAATGGTGCCGCATGATGGAAGGTGAAGATTGGAGGAAGATATGCCATCTCCCTAGCATATGGCTTGATTGTGAAGAGGTATCCAAGTCCCAGAATATGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 ko04016 ko04075 ko04931 map04014 map04016 map04075 map04931
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

1015

Amino Acids

115.38

Weight (kDa)

5.55

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 309 - 419 8.9e-15 Leucine-rich repeat region
WHD_DRP PF23559 477 - 525 3.1e-14 Disease resistance protein Winged helix domain
LRR_8 PF13855 634 - 690 2e-06 Leucine rich repeat
LRR_14 PF23598 655 - 927 3.5e-24 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 746 - 871 5.6e-39 R13L1/DRL21 LRRs
LRR_RPS2 PF23247 832 - 950 1.2e-06 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000546)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica MD14G1049300.v1.1
rosa_chinensis RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata RLG00000001164 RLG00000013941
rosa_multiflora Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1632
Acc36I ACCTGC 1 cut(s) 2358
AccB1I GGYRCC 4 cut(s) 1621, 1739, 2229, 2949
AccB7I CCANNNNNTGG 3 cut(s) 2570, 2644, 3040
AccI GTMKAC 1 cut(s) 1390
AccII CGCG 3 cut(s) 112, 372, 475
AclWI GGATC 4 cut(s) 422, 435, 1498, 1864
AcoI YGGCCR 1 cut(s) 1639
AcuI CTGAAG 4 cut(s) 455, 1281, 1506, 2174
AdeI CACNNNGTG 1 cut(s) 2552
AfaI GTAC 5 cut(s) 482, 1215, 1252, 1831, 2274
AfeI AGCGCT 1 cut(s) 814
AflII CTTAAG 3 cut(s) 98, 1897, 2246
AjnI CCWGG 4 cut(s) 793, 1636, 2307, 2876
AjuI GAANNNNNNNTTGG 2 cut(s) 440, 472
Alw21I GWGCWC 2 cut(s) 278, 2367
Alw26I GTCTC 4 cut(s) 892, 1033, 1942, 2598
AlwI GGATC 4 cut(s) 422, 435, 1498, 1864
AlwNI CAGNNNCTG 1 cut(s) 2859
Ama87I CYCGRG 2 cut(s) 11, 26
Aor51HI AGCGCT 1 cut(s) 814
AoxI GGCC 6 cut(s) 8, 173, 1489, 1639, 2440, 2879
ApaI GGGCCC 1 cut(s) 177
ApeKI GCWGC 3 cut(s) 1225, 2324, 2327
ArsI GACNNNNNNTTYG 4 cut(s) 599, 631, 1744, 1776
Asp700I GAANNNNTTC 1 cut(s) 2424
AspLEI GCGC 4 cut(s) 475, 815, 897, 2859
AspS9I GGNCC 4 cut(s) 9, 173, 174, 2154
AsuC2I CCSGG 5 cut(s) 12, 13, 280, 2473, 2933
AsuHPI GGTGA 8 cut(s) 139, 194, 537, 623, 1547, 2632, 2765, 2978
AsuII TTCGAA 3 cut(s) 618, 1960, 2687
AvaI CYCGRG 2 cut(s) 11, 26
AvaII GGWCC 1 cut(s) 2154
AxyI CCTNAGG 1 cut(s) 1200
BaeGI GKGCMC 2 cut(s) 177, 1626
BalI TGGCCA 1 cut(s) 1641
BamHI GGATCC 1 cut(s) 427
BanI GGYRCC 4 cut(s) 1621, 1739, 2229, 2949
BanII GRGCYC 4 cut(s) 177, 278, 855, 2367
BauI CACGAG 1 cut(s) 1878
BbsI GAAGAC 3 cut(s) 443, 504, 2417
Bbv12I GWGCWC 2 cut(s) 278, 2367
BbvI GCAGC 3 cut(s) 1212, 2314, 2336
BceAI ACGGC 2 cut(s) 110, 485
BcgI CGANNNNNNTGC 2 cut(s) 944, 978
BciT130I CCWGG 4 cut(s) 795, 1638, 2309, 2878
BciVI GTATCC 1 cut(s) 3034
BclI TGATCA 1 cut(s) 2665
BcnI CCSGG 5 cut(s) 12, 13, 280, 2473, 2933
BcoDI GTCTC 4 cut(s) 892, 1033, 1942, 2598
BfaI CTAG 3 cut(s) 318, 2702, 2997
BfmI CTRYAG 2 cut(s) 1591, 2536
BfoI RGCGCY 2 cut(s) 816, 2860
BfrI CTTAAG 3 cut(s) 98, 1897, 2246
BfuAI ACCTGC 1 cut(s) 2358
BfuI GTATCC 1 cut(s) 3034
BisI GCNGC 7 cut(s) 104, 107, 110, 1226, 2325, 2328, 2953
BlsI GCNGC 7 cut(s) 105, 108, 111, 1227, 2326, 2329, 2954
BmcAI AGTACT 1 cut(s) 2274
Bme1390I CCNGG 9 cut(s) 12, 13, 280, 795, 1638, 2309, 2473, 2878, 2933
Bme18I GGWCC 1 cut(s) 2154
BmeT110I CYCGRG 2 cut(s) 11, 26
BmgT120I GGNCC 4 cut(s) 9, 173, 174, 2154
BmiI GGNNCC 8 cut(s) 175, 176, 429, 1275, 1623, 1741, 2231, 2951
BmrFI CCNGG 9 cut(s) 12, 13, 280, 795, 1638, 2309, 2473, 2878, 2933
BmrI ACTGGG 1 cut(s) 2654
BmsI GCATC 6 cut(s) 149, 487, 964, 2212, 2531, 2909
BmuI ACTGGG 1 cut(s) 2654
BpiI GAAGAC 3 cut(s) 443, 504, 2417
BplI GAGNNNNNCTC 2 cut(s) 842, 874
BpmI CTGGAG 2 cut(s) 2392, 2714
Bpu10I CCTNAGC 2 cut(s) 169, 2319
Bpu14I TTCGAA 3 cut(s) 618, 1960, 2687
BpuEI CTTGAG 3 cut(s) 1652, 2822, 2927
BpuMI CCSGG 5 cut(s) 12, 13, 280, 2473, 2933
Bsa29I ATCGAT 1 cut(s) 2127
BsaJI CCNNGG 7 cut(s) 11, 27, 110, 178, 660, 1507, 1743
BsaWI WCCGGW 2 cut(s) 124, 579
BsaXI ACNNNNNCTCC 2 cut(s) 1681, 1711
Bse1I ACTGG 4 cut(s) 886, 2638, 2660, 2697
Bse21I CCTNAGG 1 cut(s) 1200
Bse3DI GCAATG 1 cut(s) 475
BseBI CCWGG 4 cut(s) 795, 1638, 2309, 2878
BseCI ATCGAT 1 cut(s) 2127
BseDI CCNNGG 7 cut(s) 11, 27, 110, 178, 660, 1507, 1743
BseGI GGATG 7 cut(s) 120, 140, 1006, 1729, 1741, 2103, 2746
BseMI GCAATG 1 cut(s) 475
BseMII CTCAG 6 cut(s) 570, 1111, 1183, 2074, 2278, 2866
BseNI ACTGG 4 cut(s) 886, 2638, 2660, 2697
BseRI GAGGAG 3 cut(s) 77, 508, 2283
BseSI GKGCMC 2 cut(s) 177, 1626
BseXI GCAGC 3 cut(s) 1212, 2314, 2336
BseYI CCCAGC 1 cut(s) 2225
Bsh1236I CGCG 3 cut(s) 112, 372, 475
BshFI GGCC 6 cut(s) 10, 175, 1491, 1641, 2442, 2881
BshNI GGYRCC 4 cut(s) 1621, 1739, 2229, 2949
BshVI ATCGAT 1 cut(s) 2127
BsiHKAI GWGCWC 2 cut(s) 278, 2367
BsiHKCI CYCGRG 2 cut(s) 11, 26
BsiSI CCGG 7 cut(s) 12, 125, 279, 580, 2018, 2472, 2933
BslFI GGGAC 2 cut(s) 167, 3016
BsmAI GTCTC 4 cut(s) 892, 1033, 1942, 2598
BsmBI CGTCTC 1 cut(s) 1942
BsmFI GGGAC 2 cut(s) 167, 3016
BsmI GAATGC 2 cut(s) 85, 829
BsnI GGCC 6 cut(s) 10, 175, 1491, 1641, 2442, 2881
BsoBI CYCGRG 2 cut(s) 11, 26
Bsp119I TTCGAA 3 cut(s) 618, 1960, 2687
Bsp120I GGGCCC 1 cut(s) 173
Bsp1286I GDGCHC 5 cut(s) 177, 278, 855, 1626, 2367
BspANI GGCC 6 cut(s) 10, 175, 1491, 1641, 2442, 2881
BspCNI CTCAG 6 cut(s) 569, 1110, 1182, 2073, 2277, 2865
BspDI ATCGAT 1 cut(s) 2127
BspFNI CGCG 3 cut(s) 112, 372, 475
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 8 cut(s) 175, 176, 429, 1275, 1623, 1741, 2231, 2951
BspMI ACCTGC 1 cut(s) 2358
BspPI GGATC 4 cut(s) 422, 435, 1498, 1864
BspQI GCTCTTC 1 cut(s) 2394
BspT104I TTCGAA 3 cut(s) 618, 1960, 2687
BspT107I GGYRCC 4 cut(s) 1621, 1739, 2229, 2949
BspTI CTTAAG 3 cut(s) 98, 1897, 2246
BsrDI GCAATG 1 cut(s) 475
BsrI ACTGG 4 cut(s) 886, 2638, 2660, 2697
BssECI CCNNGG 7 cut(s) 11, 27, 110, 178, 660, 1507, 1743
BssSI CACGAG 1 cut(s) 1878
BssT1I CCWWGG 3 cut(s) 178, 660, 1743
Bst2BI CACGAG 1 cut(s) 1878
Bst2UI CCWGG 4 cut(s) 795, 1638, 2309, 2878
BstAFI CTTAAG 3 cut(s) 98, 1897, 2246
BstBI TTCGAA 3 cut(s) 618, 1960, 2687
BstC8I GCNNGC 2 cut(s) 1845, 2440
BstDSI CCRYGG 2 cut(s) 110, 1507
BstEII GGTNACC 1 cut(s) 543
BstF5I GGATG 7 cut(s) 120, 140, 1006, 1729, 1741, 2103, 2746
BstFNI CGCG 3 cut(s) 112, 372, 475
BstH2I RGCGCY 2 cut(s) 816, 2860
BstHHI GCGC 4 cut(s) 475, 815, 897, 2859
BstMAI GTCTC 4 cut(s) 892, 1033, 1942, 2598
BstMWI GCNNNNNNNGC 3 cut(s) 103, 109, 2324
BstNI CCWGG 4 cut(s) 795, 1638, 2309, 2878
BstPI GGTNACC 1 cut(s) 543
BstSCI CCNGG 9 cut(s) 10, 11, 278, 793, 1636, 2307, 2471, 2876, 2931
BstSFI CTRYAG 2 cut(s) 1591, 2536
BstSLI GKGCMC 2 cut(s) 177, 1626
BstUI CGCG 3 cut(s) 112, 372, 475
BstV1I GCAGC 3 cut(s) 1212, 2314, 2336
BstV2I GAAGAC 3 cut(s) 443, 504, 2417
BstX2I RGATCY 3 cut(s) 427, 1503, 1856
BstXI CCANNNNNNTGG 1 cut(s) 1047
BstYI RGATCY 3 cut(s) 427, 1503, 1856
Bsu15I ATCGAT 1 cut(s) 2127
Bsu36I CCTNAGG 1 cut(s) 1200
BsuI GTATCC 1 cut(s) 3034
BsuRI GGCC 6 cut(s) 10, 175, 1491, 1641, 2442, 2881
BsuTUI ATCGAT 1 cut(s) 2127
BtgI CCRYGG 2 cut(s) 110, 1507
BtsCI GGATG 7 cut(s) 120, 140, 1006, 1729, 1741, 2103, 2746
BtsIMutI CAGTG 5 cut(s) 879, 1782, 1913, 2548, 2816
BveI ACCTGC 1 cut(s) 2358
Cac8I GCNNGC 2 cut(s) 1845, 2440
CaiI CAGNNNCTG 1 cut(s) 2859
CciI TCATGA 1 cut(s) 193
CfoI GCGC 4 cut(s) 475, 815, 897, 2859
Cfr13I GGNCC 4 cut(s) 9, 173, 174, 2154
Cfr42I CCGCGG 1 cut(s) 113
Cfr9I CCCGGG 1 cut(s) 11
ClaI ATCGAT 1 cut(s) 2127
Csp6I GTAC 5 cut(s) 481, 1214, 1251, 1830, 2273
CviQI GTAC 5 cut(s) 481, 1214, 1251, 1830, 2273
DraIII CACNNNGTG 1 cut(s) 2552
EaeI YGGCCR 1 cut(s) 1639
Ecl136II GAGCTC 2 cut(s) 276, 2365
Eco130I CCWWGG 3 cut(s) 178, 660, 1743
Eco147I AGGCCT 1 cut(s) 1491
Eco24I GRGCYC 4 cut(s) 177, 278, 855, 2367
Eco32I GATATC 1 cut(s) 2137
Eco47I GGWCC 1 cut(s) 2154
Eco47III AGCGCT 1 cut(s) 814
Eco53kI GAGCTC 2 cut(s) 276, 2365
Eco57I CTGAAG 4 cut(s) 455, 1281, 1506, 2174
Eco81I CCTNAGG 1 cut(s) 1200
Eco88I CYCGRG 2 cut(s) 11, 26
Eco91I GGTNACC 1 cut(s) 543
EcoICRI GAGCTC 2 cut(s) 276, 2365
EcoO109I RGGNCCY 2 cut(s) 173, 174
EcoO65I GGTNACC 1 cut(s) 543
EcoRI GAATTC 1 cut(s) 665
EcoRII CCWGG 4 cut(s) 793, 1636, 2307, 2876
EcoRV GATATC 1 cut(s) 2137
EcoT14I CCWWGG 3 cut(s) 178, 660, 1743
EcoT22I ATGCAT 3 cut(s) 142, 831, 2683
EcoT38I GRGCYC 4 cut(s) 177, 278, 855, 2367
ErhI CCWWGG 3 cut(s) 178, 660, 1743
Esp3I CGTCTC 1 cut(s) 1942
FaqI GGGAC 2 cut(s) 167, 3016
FauI CCCGC 3 cut(s) 156, 365, 532
FauNDI CATATG 1 cut(s) 3002
FbaI TGATCA 1 cut(s) 2665
FblI GTMKAC 1 cut(s) 1390
Fnu4HI GCNGC 7 cut(s) 104, 107, 110, 1226, 2325, 2328, 2953
FokI GGATG 7 cut(s) 127, 127, 1013, 1736, 1748, 2110, 2753
FriOI GRGCYC 4 cut(s) 177, 278, 855, 2367
Fsp4HI GCNGC 7 cut(s) 104, 107, 110, 1226, 2325, 2328, 2953
FspBI CTAG 3 cut(s) 318, 2702, 2997
GlaI GCGC 4 cut(s) 474, 814, 896, 2858
GluI GCNGC 7 cut(s) 104, 107, 110, 1226, 2325, 2328, 2953
GsaI CCCAGC 1 cut(s) 2229
GsuI CTGGAG 2 cut(s) 2392, 2714
HaeII RGCGCY 2 cut(s) 816, 2860
HaeIII GGCC 6 cut(s) 10, 175, 1491, 1641, 2442, 2881
HapII CCGG 7 cut(s) 12, 125, 279, 580, 2018, 2472, 2933
HhaI GCGC 4 cut(s) 475, 815, 897, 2859
Hin6I GCGC 4 cut(s) 473, 813, 895, 2857
HinP1I GCGC 4 cut(s) 473, 813, 895, 2857
HincII GTYRAC 2 cut(s) 1183, 2710
HindII GTYRAC 2 cut(s) 1183, 2710
HindIII AAGCTT 2 cut(s) 1670, 2176
HpaII CCGG 7 cut(s) 12, 125, 279, 580, 2018, 2472, 2933
HphI GGTGA 8 cut(s) 139, 194, 537, 623, 1547, 2632, 2765, 2978
Hpy166II GTNNAC 7 cut(s) 1070, 1183, 1391, 1832, 2074, 2710, 2746
Hpy8I GTNNAC 7 cut(s) 1070, 1183, 1391, 1832, 2074, 2710, 2746
Hpy99I CGWCG 2 cut(s) 611, 679
HpyAV CCTTC 8 cut(s) 386, 1324, 1481, 1587, 2198, 2731, 2772, 2957
HpyCH4IV ACGT 1 cut(s) 1678
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 109, 2324
HpySE526I ACGT 1 cut(s) 1678
HspAI GCGC 4 cut(s) 473, 813, 895, 2857
Ksp22I TGATCA 1 cut(s) 2665
KspI CCGCGG 1 cut(s) 113
LguI GCTCTTC 1 cut(s) 2394
LmnI GCTCC 6 cut(s) 281, 1273, 1702, 2362, 2370, 2724
Lsp1109I GCAGC 3 cut(s) 1212, 2314, 2336
LweI GCATC 6 cut(s) 149, 487, 964, 2212, 2531, 2909
MaeI CTAG 3 cut(s) 318, 2702, 2997
MaeII ACGT 1 cut(s) 1678
MaeIII GTNAC 8 cut(s) 412, 502, 543, 1080, 1152, 1586, 2577, 2753
MfeI CAATTG 4 cut(s) 846, 993, 1121, 1692
MflI RGATCY 3 cut(s) 427, 1503, 1856
MhlI GDGCHC 5 cut(s) 177, 278, 855, 1626, 2367
MlsI TGGCCA 1 cut(s) 1641
MluNI TGGCCA 1 cut(s) 1641
MlyI GAGTC 7 cut(s) 305, 851, 1081, 1325, 1933, 2052, 2918
MmeI TCCRAC 3 cut(s) 1713, 2340, 2510
Mox20I TGGCCA 1 cut(s) 1641
Mph1103I ATGCAT 3 cut(s) 142, 831, 2683
MroXI GAANNNNTTC 1 cut(s) 2424
MscI TGGCCA 1 cut(s) 1641
MslI CAYNNNNRTG 1 cut(s) 1371
Msp20I TGGCCA 1 cut(s) 1641
MspA1I CMGCKG 3 cut(s) 112, 2327, 2370
MspCI CTTAAG 3 cut(s) 98, 1897, 2246
MspI CCGG 7 cut(s) 12, 125, 279, 580, 2018, 2472, 2933
MspR9I CCNGG 9 cut(s) 12, 13, 280, 795, 1638, 2309, 2473, 2878, 2933
MunI CAATTG 4 cut(s) 846, 993, 1121, 1692
Mva1269I GAATGC 2 cut(s) 85, 829
MvaI CCWGG 4 cut(s) 795, 1638, 2309, 2878
MvnI CGCG 3 cut(s) 112, 372, 475
MwoI GCNNNNNNNGC 3 cut(s) 103, 109, 2324
NciI CCSGG 5 cut(s) 12, 13, 280, 2473, 2933
NdeI CATATG 1 cut(s) 3002
NlaIV GGNNCC 8 cut(s) 175, 176, 429, 1275, 1623, 1741, 2231, 2951
NmeAIII GCCGAG 1 cut(s) 2413
NmuCI GTSAC 3 cut(s) 543, 1586, 2753
NsiI ATGCAT 3 cut(s) 142, 831, 2683
NspV TTCGAA 3 cut(s) 618, 1960, 2687
PagI TCATGA 1 cut(s) 193
PceI AGGCCT 1 cut(s) 1491
PciSI GCTCTTC 1 cut(s) 2394
PcsI WCGNNNNNNNCGW 1 cut(s) 615
PctI GAATGC 2 cut(s) 85, 829
PdmI GAANNNNTTC 1 cut(s) 2424
PfeI GAWTC 8 cut(s) 642, 656, 1058, 1130, 1607, 2021, 2030, 2786
PflFI GACNNNGTC 1 cut(s) 2197
PflMI CCANNNNNTGG 3 cut(s) 2570, 2644, 3040
PkrI GCNGC 7 cut(s) 105, 108, 111, 1227, 2326, 2329, 2954
PleI GAGTC 7 cut(s) 305, 851, 1081, 1324, 1932, 2052, 2917
PpsI GAGTC 7 cut(s) 305, 851, 1081, 1324, 1932, 2052, 2917
PsiI TTATAA 1 cut(s) 1632
Psp124BI GAGCTC 2 cut(s) 278, 2367
Psp6I CCWGG 4 cut(s) 793, 1636, 2307, 2876
PspEI GGTNACC 1 cut(s) 543
PspFI CCCAGC 1 cut(s) 2225
PspGI CCWGG 4 cut(s) 793, 1636, 2307, 2876
PspN4I GGNNCC 8 cut(s) 175, 176, 429, 1275, 1623, 1741, 2231, 2951
PspOMI GGGCCC 1 cut(s) 173
PspPI GGNCC 4 cut(s) 9, 173, 174, 2154
PstNI CAGNNNCTG 1 cut(s) 2859
PsuI RGATCY 3 cut(s) 427, 1503, 1856
PsyI GACNNNGTC 1 cut(s) 2197
PvuII CAGCTG 1 cut(s) 2327
RsaI GTAC 5 cut(s) 482, 1215, 1252, 1831, 2274
RsaNI GTAC 5 cut(s) 481, 1214, 1251, 1830, 2273
RseI CAYNNNNRTG 1 cut(s) 1371
SacI GAGCTC 2 cut(s) 278, 2367
SacII CCGCGG 1 cut(s) 113
SapI GCTCTTC 1 cut(s) 2394
SatI GCNGC 7 cut(s) 104, 107, 110, 1226, 2325, 2328, 2953
Sau96I GGNCC 4 cut(s) 9, 173, 174, 2154
ScaI AGTACT 1 cut(s) 2274
SchI GAGTC 7 cut(s) 305, 851, 1081, 1325, 1933, 2052, 2918
ScrFI CCNGG 9 cut(s) 12, 13, 280, 795, 1638, 2309, 2473, 2878, 2933
SduI GDGCHC 5 cut(s) 177, 278, 855, 1626, 2367
SfaNI GCATC 6 cut(s) 149, 487, 964, 2212, 2531, 2909
SfcI CTRYAG 2 cut(s) 1591, 2536
Sfr303I CCGCGG 1 cut(s) 113
SfuI TTCGAA 3 cut(s) 618, 1960, 2687
SgrBI CCGCGG 1 cut(s) 113
SinI GGWCC 1 cut(s) 2154
SmaI CCCGGG 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 1371
SmlI CTYRAG 6 cut(s) 98, 1667, 1897, 2246, 2837, 2906
SmoI CTYRAG 6 cut(s) 98, 1667, 1897, 2246, 2837, 2906
SseBI AGGCCT 1 cut(s) 1491
SspI AATATT 1 cut(s) 571
SspMI CTAG 3 cut(s) 318, 2702, 2997
SstI GAGCTC 2 cut(s) 278, 2367
StuI AGGCCT 1 cut(s) 1491
StyD4I CCNGG 9 cut(s) 10, 11, 278, 793, 1636, 2307, 2471, 2876, 2931
StyI CCWWGG 3 cut(s) 178, 660, 1743
TaiI ACGT 1 cut(s) 1681
TaqII GACCGA 1 cut(s) 553
TatI WGTACW 2 cut(s) 480, 2272
TauI GCSGC 4 cut(s) 106, 109, 112, 2955
TfiI GAWTC 8 cut(s) 642, 656, 1058, 1130, 1607, 2021, 2030, 2786
TscAI CASTG 5 cut(s) 886, 1789, 1920, 2555, 2823
TseFI GTSAC 3 cut(s) 543, 1586, 2753
TseI GCWGC 3 cut(s) 1225, 2324, 2327
Tsp45I GTSAC 3 cut(s) 543, 1586, 2753
TspGWI ACGGA 3 cut(s) 1524, 1689, 2411
TspMI CCCGGG 1 cut(s) 11
TspRI CASTG 5 cut(s) 886, 1789, 1920, 2555, 2823
Tth111I GACNNNGTC 1 cut(s) 2197
Van91I CCANNNNNTGG 3 cut(s) 2570, 2644, 3040
Vha464I CTTAAG 3 cut(s) 98, 1897, 2246
VpaK11BI GGWCC 1 cut(s) 2154
XcmI CCANNNNNNNNNTGG 1 cut(s) 2820
XmaI CCCGGG 1 cut(s) 11
XmiI GTMKAC 1 cut(s) 1390
XmnI GAANNNNTTC 1 cut(s) 2424
XspI CTAG 3 cut(s) 318, 2702, 2997
ZrmI AGTACT 1 cut(s) 2274
Zsp2I ATGCAT 3 cut(s) 142, 831, 2683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.