Rorug06G0037400

phosphatase 2c

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
4699454 .. 4700154
701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0037400.1

Sequence Viewer

Length: 486 bp
ATGGAGTTGTCTAAGATTTCATTCGCTCTCATTTCCCTCACAGCCATTGCCCTACTCCATTCCATTCATGCCCAAGACTCACAGCAAGACTATCTTGATGCCCACAACGCGGCTAGAGCCGCGGTGGGTGTTGGGCCCTTGACATGGGATGACCAAGTAGCGCGTTTTGCACAAGACTATGCCAGTACCCATGTAGGTGACTGCCAACTCGTCCATTCCGGTGGGAAATATGGTGAAAACCTTGCGATGAGCACCGGCGACTTGTCGGGCACAGATGCCGTCAACATGTGGGTGGGAGAGAAGGCCGACTATGATTACAACTCGAATACTTGCGCCGCTGACAAGGTTTGTGGACATTATACGCAGGTCGTTTGGCGGAACTCGCTACGTGTTGGGTGTGCCAAAGTGAGGTGCAACAGTGGAGGTACCTTTATTGGGTGCAACTATGATCCTCCGGGCAACTATGTTGGGGAAAAACCTTACTGA

Protein Analysis

161

Amino Acids

17.34

Weight (kDa)

5.33

Isoelectric Point (pI)

18.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 32 - 149 1.4e-19 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000546)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica MD14G1049300.v1.1
rosa_chinensis RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata RLG00000001164 RLG00000013941
rosa_multiflora Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 355
Acc65I GGTACC 1 cut(s) 425
AccB1I GGYRCC 1 cut(s) 425
AccII CGCG 3 cut(s) 110, 122, 163
AciI CCGC 5 cut(s) 110, 120, 122, 336, 376
AclWI GGATC 1 cut(s) 443
AfaI GTAC 2 cut(s) 187, 427
AfiI CCNNNNNNNGG 4 cut(s) 109, 144, 408, 435
AflIII ACRYGT 2 cut(s) 285, 388
Alw21I GWGCWC 1 cut(s) 254
AlwI GGATC 1 cut(s) 443
AoxI GGCC 2 cut(s) 134, 303
ApaI GGGCCC 1 cut(s) 138
Asp718I GGTACC 1 cut(s) 425
AspLEI GCGC 2 cut(s) 163, 335
AspS9I GGNCC 2 cut(s) 134, 135
AsuC2I CCSGG 1 cut(s) 456
AsuHPI GGTGA 2 cut(s) 209, 245
BaeGI GKGCMC 2 cut(s) 138, 272
BanI GGYRCC 1 cut(s) 425
BanII GRGCYC 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 254
BceAI ACGGC 1 cut(s) 263
BcnI CCSGG 1 cut(s) 456
BfaI CTAG 1 cut(s) 114
BfuAI ACCTGC 1 cut(s) 355
BisI GCNGC 3 cut(s) 111, 120, 336
BlsI GCNGC 3 cut(s) 112, 121, 337
Bme1390I CCNGG 1 cut(s) 456
BmgT120I GGNCC 2 cut(s) 134, 135
BmiI GGNNCC 2 cut(s) 136, 427
BmrFI CCNGG 1 cut(s) 456
BmsI GCATC 2 cut(s) 88, 265
BpuMI CCSGG 1 cut(s) 456
BsaAI YACGTR 1 cut(s) 389
BsaJI CCNNGG 1 cut(s) 120
BsaWI WCCGGW 1 cut(s) 218
Bsc4I CCNNNNNNNGG 4 cut(s) 109, 144, 408, 435
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 4 cut(s) 109, 144, 408, 435
BseMI GCAATG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 183
BseSI GKGCMC 2 cut(s) 138, 272
Bsh1236I CGCG 3 cut(s) 110, 122, 163
BshFI GGCC 2 cut(s) 136, 305
BshNI GGYRCC 1 cut(s) 425
BsiHKAI GWGCWC 1 cut(s) 254
BsiSI CCGG 3 cut(s) 219, 255, 455
BslI CCNNNNNNNGG 4 cut(s) 109, 144, 408, 435
BsnI GGCC 2 cut(s) 136, 305
Bsp120I GGGCCC 1 cut(s) 134
Bsp1286I GDGCHC 3 cut(s) 138, 254, 272
Bsp143I GATC 1 cut(s) 448
BspACI CCGC 5 cut(s) 110, 120, 122, 336, 376
BspANI GGCC 2 cut(s) 136, 305
BspFNI CGCG 3 cut(s) 110, 122, 163
BspLI GGNNCC 2 cut(s) 136, 427
BspMI ACCTGC 1 cut(s) 355
BspPI GGATC 1 cut(s) 443
BspT107I GGYRCC 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 1 cut(s) 183
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 1 cut(s) 448
Bst4CI ACNGT 1 cut(s) 419
BstBAI YACGTR 1 cut(s) 389
BstDEI CTNAG 1 cut(s) 12
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 154
BstFNI CGCG 3 cut(s) 110, 122, 163
BstHHI GCGC 2 cut(s) 163, 335
BstKTI GATC 1 cut(s) 451
BstMBI GATC 1 cut(s) 448
BstMWI GCNNNNNNNGC 5 cut(s) 107, 116, 119, 167, 382
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 454
BstSLI GKGCMC 2 cut(s) 138, 272
BstUI CGCG 3 cut(s) 110, 122, 163
BstXI CCANNNNNNTGG 1 cut(s) 221
BsuRI GGCC 2 cut(s) 136, 305
BtgI CCRYGG 1 cut(s) 120
BtgZI GCGATG 1 cut(s) 260
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 424
BveI ACCTGC 1 cut(s) 355
CfoI GCGC 2 cut(s) 163, 335
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 2 cut(s) 134, 135
Cfr42I CCGCGG 1 cut(s) 123
Csp6I GTAC 2 cut(s) 186, 426
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviAII CATG 4 cut(s) 68, 144, 191, 286
CviJI RGCY 5 cut(s) 44, 113, 119, 136, 305
CviKI_1 RGCY 5 cut(s) 44, 113, 119, 136, 305
CviQI GTAC 2 cut(s) 186, 426
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
EciI GGCGGA 1 cut(s) 391
Eco24I GRGCYC 1 cut(s) 138
EcoO109I RGGNCCY 1 cut(s) 135
EcoT38I GRGCYC 1 cut(s) 138
FaeI CATG 4 cut(s) 71, 147, 194, 289
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FatI CATG 4 cut(s) 67, 143, 190, 285
Fnu4HI GCNGC 3 cut(s) 111, 120, 336
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 3 cut(s) 111, 120, 336
FspBI CTAG 1 cut(s) 114
GlaI GCGC 2 cut(s) 162, 334
GluI GCNGC 3 cut(s) 111, 120, 336
HaeIII GGCC 2 cut(s) 136, 305
HapII CCGG 3 cut(s) 219, 255, 455
HhaI GCGC 2 cut(s) 163, 335
Hin1II CATG 4 cut(s) 71, 147, 194, 289
Hin6I GCGC 2 cut(s) 161, 333
HinP1I GCGC 2 cut(s) 161, 333
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 1 cut(s) 77
HpaII CCGG 3 cut(s) 219, 255, 455
HphI GGTGA 2 cut(s) 209, 245
Hpy166II GTNNAC 2 cut(s) 283, 353
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 2 cut(s) 283, 353
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 1 cut(s) 419
HpyCH4IV ACGT 1 cut(s) 388
HpyCH4V TGCA 3 cut(s) 170, 414, 441
HpyF10VI GCNNNNNNNGC 5 cut(s) 107, 116, 119, 167, 382
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 388
Hsp92II CATG 4 cut(s) 71, 147, 194, 289
HspAI GCGC 2 cut(s) 161, 333
KpnI GGTACC 1 cut(s) 429
KspI CCGCGG 1 cut(s) 123
Kzo9I GATC 1 cut(s) 448
LpnPI CCDG 5 cut(s) 196, 232, 268, 350, 468
LweI GCATC 2 cut(s) 88, 265
MaeI CTAG 1 cut(s) 114
MaeII ACGT 1 cut(s) 388
MaeIII GTNAC 1 cut(s) 197
MalI GATC 1 cut(s) 450
MboI GATC 1 cut(s) 448
MhlI GDGCHC 3 cut(s) 138, 254, 272
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 4 cut(s) 47, 402, 416, 462
MslI CAYNNNNRTG 3 cut(s) 195, 219, 290
MspA1I CMGCKG 2 cut(s) 122, 338
MspI CCGG 3 cut(s) 219, 255, 455
MspR9I CCNGG 1 cut(s) 456
MvnI CGCG 3 cut(s) 110, 122, 163
MwoI GCNNNNNNNGC 5 cut(s) 107, 116, 119, 167, 382
NciI CCSGG 1 cut(s) 456
NdeII GATC 1 cut(s) 448
NlaIII CATG 4 cut(s) 71, 147, 194, 289
NlaIV GGNNCC 2 cut(s) 136, 427
NmuCI GTSAC 1 cut(s) 197
NspI RCATGY 1 cut(s) 289
PciI ACATGT 1 cut(s) 285
PkrI GCNGC 3 cut(s) 112, 121, 337
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
Ppu21I YACGTR 1 cut(s) 389
PscI ACATGT 1 cut(s) 285
PspN4I GGNNCC 2 cut(s) 136, 427
PspOMI GGGCCC 1 cut(s) 134
PspPI GGNCC 2 cut(s) 134, 135
RsaI GTAC 2 cut(s) 187, 427
RsaNI GTAC 2 cut(s) 186, 426
RseI CAYNNNNRTG 3 cut(s) 195, 219, 290
SacII CCGCGG 1 cut(s) 123
SatI GCNGC 3 cut(s) 111, 120, 336
Sau3AI GATC 1 cut(s) 448
Sau96I GGNCC 2 cut(s) 134, 135
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 456
SduI GDGCHC 3 cut(s) 138, 254, 272
SetI ASST 9 cut(s) 199, 243, 348, 369, 391, 413, 427, 431, 481
SfaNI GCATC 2 cut(s) 88, 265
Sfr303I CCGCGG 1 cut(s) 123
SgrAI CRCCGGYG 1 cut(s) 254
SgrBI CCGCGG 1 cut(s) 123
SmiMI CAYNNNNRTG 3 cut(s) 195, 219, 290
SsiI CCGC 5 cut(s) 110, 120, 122, 336, 376
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 454
TaaI ACNGT 1 cut(s) 419
TaiI ACGT 1 cut(s) 391
TaqI TCGA 1 cut(s) 323
TauI GCSGC 3 cut(s) 113, 122, 338
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 2 cut(s) 9, 56
TspRI CASTG 1 cut(s) 424
XceI RCATGY 1 cut(s) 289
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.