Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000546

Physical Location & Seq

Genomic Coordinates Forward (+)

54536377 .. 54542602

Gene Structure 6226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G027830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3705 bp

ATGGAAAGTCCGCCTGAGGTTGCAGCAGATTCTTTCTCTGCTGGCACCAGAGAGGGAGTAAAGGATCCAAGTTTGGAGCAAAAGCTTAGGCAGGTTACAGATGAGCATGGGATTTTGCCTCACCATTTGAAAAGGTTATTTCTGTATTGTTCACTCTTTCCTTTTGGTTATGAATTTAGAAAAGATGAGTTGGTTCAGTTATGGATAGCTGAAGGCTTTATTAGAGAGAGGCATGGGGAGAGAATGGAAGATATTGCTGGCGAGCATTTTAATTCCTTGGAGAAGGAAGTCTTCTTTGTGTTTTCAAGATGTGATTTCACTATGGATTTTGATTCGGTGCTCTCGGATCCGACGGATAATCCCAGCAACTTCTTGTACAAAGTAAATCCTAGCAAGTATTCATTATTAGAAGACACCATTTCTTCAGGTAATTATTTCAAAGCAGTGGATGGTAAGGTAGATGGAGCCTCTGAAATGACGAGACATTTGTCTTTGATTGGTGAGGATATTGATGGGATGGCTTTTGGGATCCTTCAAAACTTTAAGCATTTGCGCACACTGCATATGCTCTCTTGTCGTGGATCTTCTATGAAACACGTCCCTCGTGATTTGTGTTTCACCTTAACGTTCTTGAAAACCTTAAATTTGAGTGGGACATTGATTTCTGAGTTGCCGAGTTCCATTGGAAATGTAAAATCATTATGTTATGTGGATGCCTCACATACACCTATTTCACGGTTACCCGAATCAATAGATTCTCTTTACAATTTACAAACCATTAAGCTCAGAGGCTGCTTTCACTTTGTTCAGTTGCCAAAAGGAATGAAGAAGCTAAAAAAGCTCCGGCATATTGATCTTGACATCATTCGGCAATTGGATTCCATGCCTGCACACCTGGGGAGCTTGAGTAATCTTCAAACTTTGCCAGCATTTCTTGTTGGTAGAGATGATGGGTGCCGTGTTGGTGAATTGAAAAATTTGAATGATCTTAAAGGGTCATTTAACATTTCAAGGCTTGAAAACGTGTTGAGTGAAGAAGAAGCTGAGGAAGCTGCCTTGATTGAAAAGAAATGTATCCACAGGTTGGAGCTTCGATGGAGTGATATGTTTGTCGAGTATTCTCAGCAAGAGAAAATACTAGAATGTCTTCAACCCCATTCTGGCCTTAAAGAGTTACAAATACAGCAGTACAGCGGGTCCATACTTCCAACTTGGATTGGCAATCCCTTTTTCACTGACCTTGTTGTCATTACCCTCTACAAATGCAGAAATTGTAAACTTCTGCCATGTATGGGACAATTACCAGCACTTAAGTCTCTTTCTATTATAGAGGTGAATGAGGTGAAAGAAATTAATCATCAATTCTTCAGAAAAGGCCTAGCTGATGATCATGCATTTCCAAAACTTGAGAGACTAGAAGTTGACATCATGCTCAGTTTGAAACAGTGGAAGGATGTACAAGTAGGTGACTTACCTTCCCTAGTGAAACTCACTCTGGACTCTTGCCCAGAACTTGTCACACTTCCAGCACTTTTGTGCCTCAAATCCCTCAAGCACTTGGAGCTCAGGTGCTGCCCAAAGCTTATGGCCTTGCCCACTGATGGACTACCAACTTCACTTGAGTTTTTCTTGCTATTGGATTGCCTTGAACTGAAAATGTGGTGCTTGAAGACTGCACATTGGAGCATGTTATGTCATGTGCCCAGCATATGGTTTGATCATGAAGAGATAAAGGGACGCTGTGGAATGACAGACCAGTTGGCAGGGGTCGGAGCTGTGGCTGCAGAAGCCCGAACCTATACTCGGATCTCAACTGAATATTCATCCTCTTTGTCAGCAGCACCTGCCCCATCTCTGCCACAGCTTTCAGCCTTTAATTCTAGGACAATGGAACCCCAGGATATGCCATCAAAAGTGCTCCACAGTGTGCTGCTTTACGGGTCAAAACCCCTTTATAGCGCACTTCCTGCAAATGAAATTCCAGAGTGGTTCAGCACTAAATCTACCAGCACTCCCATATCAATCCCAACAGGGGATAACAAGTGGAAGGGAGTTGCCGCATGTGCTGTTTTCTCAGTCCAGGGACATACGCCTGCAGATCTTGACTTTTCTAATTACTCGTATCTAATCATACTGGAAACCGATGTTGCGAGCCTGGAACCATATGTGATTAACTGGGAAGAACAACTCCTCCCCCTTGGATCAAGTTCTGATCTTCTTTTAATTTCCTATAAGCCTAGATTGAAGTTTCCAAAGCGGGCGTTAAATCAATCAACTGTGGTGAGGACTATATTTGAAACCAACAACCCATACATGGTGGTCCGGAAATGTGGGATTCGTCTAGTCTATGAGCAAGATGCTGGATGGTTTAGTATCAACATATGCCCTGGGGTGGAGTCGATCTATCTGGATAAAGATGATGACGACGCTGTACTGGAGTCTGGCTGGCTTAGTCAAGTGGATAAATGTCTCAAATGGGAGAAATTCATTCCACCCTTGGAAGAAGACTCCACATTTGGGATGAGAATGAACATTCAGTCTGTTCTGCCAAGATACCTTGAGGCATTAAACCATTGTTCCACAGTGTATAAATTTAACATCACAGGAAGCCCAGCGTGGTTTAAGCACTTATTTCGCTTTATCGATAAATTGCCAGCTATATGCTGGGCTTCTTGGCCAATCAACATACCTCAGAATCTAAACAAGAGTAAGAAGTGGATGGGATTTGCAATATACGCATCAATTGCAGAGGAACTGGGGCATATAATAGAGGACAAAGATGGCAAATATCGTGTTTATTTTAGATTCGATATGGGGTGTAAATGTCATACGACTGTGTCCCAAGAACTTCAGCAAGTCAAGTCGTCAGAAAAACATGATCAACTTTTGGTTGTTTACATACCGCGGGCACAAATTGCCGATGTGTTGCTCACACAGACATCAACAAATGCAATGCACATTTCCTTCAGGATCGATAGCCCTTGTGTAAAGTTTCAAAGTTGTGGGTTTCGTATTGTGTACCAGGAAGATATACAAGGGTTTGCTGAGACAATTATCCGGTGCATGCAGAGGGAAGATGCTCTAGAGTTTCACGATAAATTGGTGGTTGAAAATTGGATAGAGTTGATAAGGTGTAATCCAAAAGAACGGGATTCCAGAACCCGACGGCAAAAAGAGTTTGAATGGCTCTCTCAAAAACATAGAAGTTTAGCAGATCTTTCAAATCCAGGAATAATGAAGAAAATTGTGTTGAAGTTGGACTTGTACGAGGAGAAGTCCAAGAAGAAAGCCATGAGGGCAGTCTCAGGGCTCGAAGTTGCAATGGAGGTCAATGGGAAATCTGTGGTAGCAGCACCTGCTAATGTTATTTTTCTGTCGACAATTTTGGGACGGGATGGGTCAATGTCTGTTCATAAGTGTGACTGGAAATGTCAGAATGAGCATGTCTGTGGGAATATGTATCACTGCGAGCTGACTGGACTCACTCACATCTGTGACAAGAATTGCAACCAGAGGGTTCTGTATGATAACCATAGCTCTCTTTGCCGGGCAAGCGGGAAGGTTTTCCCCCTTACACCAGTAGAGAAACAGGCAGTGAGAGGGGTCCGGAGGAAGCTTGAGTCAGAGGCCCCTGCTGCTGCAGACAATTGTTCCTTTAAAGGCAGACAGGATGAACAGCTCCATCCTTCACTACTGCCAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

PP2C

Protein Analysis

1234

Amino Acids

140.03

Weight (kDa)

6.4

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_DRP	PF23559	52 - 100	2.2e-14	Disease resistance protein Winged helix domain
LRR_14	PF23598	177 - 235	3.3e-06	Leucine-rich repeat region
LRR_14	PF23598	228 - 501	1.4e-21	Leucine-rich repeat region
LRR_R13L1-DRL21	PF25019	322 - 444	3.6e-37	R13L1/DRL21 LRRs
C-JID	PF20160	655 - 787	4.6e-06	C-JID domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica	MD14G1049300.v1.1
rosa_chinensis	RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata	RLG00000001164 RLG00000013941
rosa_multiflora	Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii	Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa	Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha	Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana	Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1852, 3364
AasI	GACNNNNNNGTC	1 cut(s)	1244
Acc16I	TGCGCA	1 cut(s)	554
Acc36I	ACCTGC	3 cut(s)	82, 1852, 3364
AccB1I	GGYRCC	2 cut(s)	44, 954
AccB7I	CCANNNNNTGG	2 cut(s)	1084, 1710
AccI	GTMKAC	1 cut(s)	3377
AccII	CGCG	1 cut(s)	2905
AccIII	TCCGGA	2 cut(s)	2322, 3606
AciI	CCGC	7 cut(s)	11, 1194, 2058, 2257, 2903, 2905, 3555
AclI	AACGTT	1 cut(s)	626
AcoI	YGGCCR	1 cut(s)	2675
AcsI	RAATTY	6 cut(s)	173, 643, 976, 1977, 2483, 2591
AcuI	CTGAAG	5 cut(s)	231, 408, 1351, 2834, 2950
AdeI	CACNNNGTG	1 cut(s)	1927
AfaI	GTAC	6 cut(s)	377, 1190, 1458, 2433, 3020, 3266
AflII	CTTAAG	1 cut(s)	1310
AflIII	ACRYGT	2 cut(s)	595, 1023
AjiI	CACGTC	1 cut(s)	598
AjnI	CCWGG	7 cut(s)	894, 1896, 2079, 2154, 2386, 3021, 3226
AleI	CACNNNNGTG	2 cut(s)	1534, 3492
AloI	GAACNNNNNNTCC	2 cut(s)	2175, 2207
Alw21I	GWGCWC	3 cut(s)	342, 1566, 1920
Alw26I	GTCTC	6 cut(s)	475, 1320, 1405, 2474, 3041, 3307
AlwNI	CAGNNNCTG	4 cut(s)	792, 1572, 1844, 3356
Aor13HI	TCCGGA	2 cut(s)	2322, 3606
AoxI	GGCC	5 cut(s)	1162, 1375, 1587, 2675, 3627
ApoI	RAATTY	6 cut(s)	173, 643, 976, 1977, 2483, 2591
ArsI	GACNNNNNNTTYG	4 cut(s)	469, 501, 2498, 2530
AseI	ATTAAT	1 cut(s)	1353
Asp700I	GAANNNNTTC	2 cut(s)	1146, 3563
AspLEI	GCGC	2 cut(s)	555, 1961
AspS9I	GGNCC	4 cut(s)	1197, 2320, 3604, 3628
AsuC2I	CCSGG	1 cut(s)	3548
AsuHPI	GGTGA	8 cut(s)	113, 512, 610, 977, 1345, 1354, 1478, 2293
AvaII	GGWCC	3 cut(s)	1197, 2320, 3604
AxyI	CCTNAGG	1 cut(s)	15
BaeGI	GKGCMC	2 cut(s)	1704, 2911
BalI	TGGCCA	1 cut(s)	2677
BamHI	GGATCC	3 cut(s)	64, 346, 528
BanI	GGYRCC	2 cut(s)	44, 954
BanII	GRGCYC	2 cut(s)	1566, 3312
BauI	CACGAG	1 cut(s)	603
BbsI	GAAGAC	5 cut(s)	283, 417, 1139, 1676, 2511
Bbv12I	GWGCWC	3 cut(s)	342, 1566, 1920
BbvCI	CCTCAGC	1 cut(s)	1044
BceAI	ACGGC	2 cut(s)	942, 3182
BcgI	CGANNNNNNTGC	2 cut(s)	2615, 2649
BciT130I	CCWGG	7 cut(s)	896, 1898, 2081, 2156, 2388, 3023, 3228
BciVI	GTATCC	1 cut(s)	1085
BclI	TGATCA	3 cut(s)	1387, 1717, 2878
BcnI	CCSGG	1 cut(s)	3548
BcoDI	GTCTC	6 cut(s)	475, 1320, 1405, 2474, 3041, 3307
BfaI	CTAG	9 cut(s)	390, 1139, 1379, 1415, 1481, 1881, 2238, 2342, 3083
BfmI	CTRYAG	3 cut(s)	1782, 2094, 3639
BfrI	CTTAAG	1 cut(s)	1310
BfuAI	ACCTGC	3 cut(s)	82, 1852, 3364
BfuI	GTATCC	1 cut(s)	1085
BglI	GCCNNNNNGGC	1 cut(s)	3296
BglII	AGATCT	2 cut(s)	2098, 3214
Bme1390I	CCNGG	8 cut(s)	896, 1898, 2081, 2156, 2388, 3023, 3228, 3548
Bme18I	GGWCC	3 cut(s)	1197, 2320, 3604
BmgBI	CACGTC	1 cut(s)	598
BmgT120I	GGNCC	4 cut(s)	1197, 2320, 3604, 3628
BmrFI	CCNGG	8 cut(s)	896, 1898, 2081, 2156, 2388, 3023, 3228, 3548
BmrI	ACTGGG	2 cut(s)	2185, 2765
BmsI	GCATC	4 cut(s)	703, 2347, 2747, 3067
BmuI	ACTGGG	2 cut(s)	2185, 2765
BoxI	GACNNNNGTC	1 cut(s)	487
BpiI	GAAGAC	5 cut(s)	283, 417, 1139, 1676, 2511
BpmI	CTGGAG	1 cut(s)	2456
Bpu10I	CCTNAGC	3 cut(s)	86, 1044, 1565
BpuEI	CTTGAG	6 cut(s)	925, 1427, 1535, 1640, 2579, 3638
BpuMI	CCSGG	1 cut(s)	3548
Bsa29I	ATCGAT	2 cut(s)	2643, 2973
BsaJI	CCNNGG	9 cut(s)	276, 895, 1896, 2080, 2197, 2386, 2387, 2496, 2903
BsaWI	WCCGGW	3 cut(s)	2322, 3057, 3606
BsaXI	ACNNNNNCTCC	8 cut(s)	892, 922, 1553, 1583, 1996, 2026, 2175, 2205
Bse1I	ACTGG	9 cut(s)	1756, 2139, 2180, 2439, 2760, 3428, 3481, 3578, 3698
Bse21I	CCTNAGG	1 cut(s)	15
Bse3DI	GCAATG	2 cut(s)	2958, 3327
BseAI	TCCGGA	2 cut(s)	2322, 3606
BseBI	CCWGG	7 cut(s)	896, 1898, 2081, 2156, 2388, 3023, 3228
BseCI	ATCGAT	2 cut(s)	2643, 2973
BseDI	CCNNGG	9 cut(s)	276, 895, 1896, 2080, 2197, 2386, 2387, 2496, 2903
BseMI	GCAATG	2 cut(s)	2958, 3327
BseNI	ACTGG	9 cut(s)	1756, 2139, 2180, 2439, 2760, 3428, 3481, 3578, 3698
BseRI	GAGGAG	2 cut(s)	2180, 3284
BseSI	GKGCMC	2 cut(s)	1704, 2911
BseYI	CCCAGC	4 cut(s)	362, 1703, 2611, 2664
BsgI	GTGCAG	2 cut(s)	873, 1659
Bsh1236I	CGCG	1 cut(s)	2905
BshFI	GGCC	5 cut(s)	1164, 1377, 1589, 2677, 3629
BshNI	GGYRCC	2 cut(s)	44, 954
BshVI	ATCGAT	2 cut(s)	2643, 2973
BsiHKAI	GWGCWC	3 cut(s)	342, 1566, 1920
BsiSI	CCGG	5 cut(s)	844, 2323, 3058, 3547, 3607
BslFI	GGGAC	7 cut(s)	584, 667, 1308, 1749, 2097, 2824, 3402
BsmAI	GTCTC	6 cut(s)	475, 1320, 1405, 2474, 3041, 3307
BsmFI	GGGAC	7 cut(s)	584, 667, 1308, 1749, 2097, 2824, 3402
BsnI	GGCC	5 cut(s)	1164, 1377, 1589, 2677, 3629
Bsp1286I	GDGCHC	6 cut(s)	342, 1566, 1704, 1920, 2911, 3312
Bsp13I	TCCGGA	2 cut(s)	2322, 3606
Bsp1407I	TGTACA	2 cut(s)	375, 1456
BspACI	CCGC	7 cut(s)	11, 1194, 2058, 2257, 2903, 2905, 3555
BspANI	GGCC	5 cut(s)	1164, 1377, 1589, 2677, 3629
BspDI	ATCGAT	2 cut(s)	2643, 2973
BspEI	TCCGGA	2 cut(s)	2322, 3606
BspFNI	CGCG	1 cut(s)	2905
BspHI	TCATGA	1 cut(s)	1720
BspMAI	CTGCAG	3 cut(s)	1786, 2098, 3643
BspMI	ACCTGC	3 cut(s)	82, 1852, 3364
BspT107I	GGYRCC	2 cut(s)	44, 954
BspTI	CTTAAG	1 cut(s)	1310
BsrDI	GCAATG	2 cut(s)	2958, 3327
BsrGI	TGTACA	2 cut(s)	375, 1456
BsrI	ACTGG	9 cut(s)	1756, 2139, 2180, 2439, 2760, 3428, 3481, 3578, 3698
BssECI	CCNNGG	9 cut(s)	276, 895, 1896, 2080, 2197, 2386, 2387, 2496, 2903
BssSI	CACGAG	1 cut(s)	603
BssT1I	CCWWGG	3 cut(s)	276, 2197, 2496
Bst2BI	CACGAG	1 cut(s)	603
Bst2UI	CCWGG	7 cut(s)	896, 1898, 2081, 2156, 2388, 3023, 3228
Bst4CI	ACNGT	6 cut(s)	738, 1446, 1925, 2278, 2584, 2836
Bst6I	CTCTTC	1 cut(s)	1719
BstAFI	CTTAAG	1 cut(s)	1310
BstAPI	GCANNNNNTGC	5 cut(s)	1844, 1967, 2744, 2915, 3356
BstAUI	TGTACA	2 cut(s)	375, 1456
BstDSI	CCRYGG	1 cut(s)	2903
BstEII	GGTNACC	1 cut(s)	738
BstFNI	CGCG	1 cut(s)	2905
BstHHI	GCGC	2 cut(s)	555, 1961
BstMAI	GTCTC	6 cut(s)	475, 1320, 1405, 2474, 3041, 3307
BstNI	CCWGG	7 cut(s)	896, 1898, 2081, 2156, 2388, 3023, 3228
BstNSI	RCATGY	4 cut(s)	1690, 2064, 3067, 3446
BstPAI	GACNNNNGTC	1 cut(s)	487
BstPI	GGTNACC	1 cut(s)	738
BstSCI	CCNGG	8 cut(s)	894, 1896, 2079, 2154, 2386, 3021, 3226, 3546
BstSFI	CTRYAG	3 cut(s)	1782, 2094, 3639
BstSLI	GKGCMC	2 cut(s)	1704, 2911
BstUI	CGCG	1 cut(s)	2905
BstV2I	GAAGAC	5 cut(s)	283, 417, 1139, 1676, 2511
BstX2I	RGATCY	7 cut(s)	64, 346, 528, 581, 1806, 2098, 3214
BstYI	RGATCY	7 cut(s)	64, 346, 528, 581, 1806, 2098, 3214
Bsu15I	ATCGAT	2 cut(s)	2643, 2973
Bsu36I	CCTNAGG	1 cut(s)	15
BsuI	GTATCC	1 cut(s)	1085
BsuRI	GGCC	5 cut(s)	1164, 1377, 1589, 2677, 3629
BsuTUI	ATCGAT	2 cut(s)	2643, 2973
BtgI	CCRYGG	1 cut(s)	2903
BtrI	CACGTC	1 cut(s)	598
BtsI	GCAGTG	4 cut(s)	450, 557, 3463, 3600
BtsIMutI	CAGTG	9 cut(s)	450, 557, 1233, 1451, 1596, 1930, 2589, 3463, 3600
BveI	ACCTGC	3 cut(s)	82, 1852, 3364
CaiI	CAGNNNCTG	4 cut(s)	792, 1572, 1844, 3356
CciI	TCATGA	1 cut(s)	1720
CfoI	GCGC	2 cut(s)	555, 1961
Cfr13I	GGNCC	4 cut(s)	1197, 2320, 3604, 3628
Cfr42I	CCGCGG	1 cut(s)	2906
ClaI	ATCGAT	2 cut(s)	2643, 2973
CseI	GACGC	2 cut(s)	1746, 2435
Csp6I	GTAC	6 cut(s)	376, 1189, 1457, 2432, 3019, 3265
CviQI	GTAC	6 cut(s)	376, 1189, 1457, 2432, 3019, 3265
DraI	TTTAAA	1 cut(s)	3658
DraIII	CACNNNGTG	1 cut(s)	1927
DrdI	GACNNNNNNGTC	1 cut(s)	1244
DseDI	GACNNNNNNGTC	1 cut(s)	1244
EaeI	YGGCCR	1 cut(s)	2675
Eam1104I	CTCTTC	1 cut(s)	1719
EarI	CTCTTC	1 cut(s)	1719
Ecl136II	GAGCTC	1 cut(s)	1564
Eco130I	CCWWGG	3 cut(s)	276, 2197, 2496
Eco147I	AGGCCT	1 cut(s)	1377
Eco24I	GRGCYC	2 cut(s)	1566, 3312
Eco47I	GGWCC	3 cut(s)	1197, 2320, 3604
Eco53kI	GAGCTC	1 cut(s)	1564
Eco57I	CTGAAG	5 cut(s)	231, 408, 1351, 2834, 2950
Eco81I	CCTNAGG	1 cut(s)	15
Eco91I	GGTNACC	1 cut(s)	738
EcoICRI	GAGCTC	1 cut(s)	1564
EcoO109I	RGGNCCY	1 cut(s)	3628
EcoO65I	GGTNACC	1 cut(s)	738
EcoRII	CCWGG	7 cut(s)	894, 1896, 2079, 2154, 2386, 3021, 3226
EcoT14I	CCWWGG	3 cut(s)	276, 2197, 2496
EcoT22I	ATGCAT	1 cut(s)	1396
EcoT38I	GRGCYC	2 cut(s)	1566, 3312
ErhI	CCWWGG	3 cut(s)	276, 2197, 2496
FalI	AAGNNNNNCTT	4 cut(s)	275, 307, 3245, 3277
FaqI	GGGAC	7 cut(s)	584, 667, 1308, 1749, 2097, 2824, 3402
FauI	CCCGC	4 cut(s)	1187, 2250, 2898, 3548
FauNDI	CATATG	4 cut(s)	564, 1709, 2164, 2381
FbaI	TGATCA	3 cut(s)	1387, 1717, 2878
FblI	GTMKAC	1 cut(s)	3377
FriOI	GRGCYC	2 cut(s)	1566, 3312
FspBI	CTAG	9 cut(s)	390, 1139, 1379, 1415, 1481, 1881, 2238, 2342, 3083
FspI	TGCGCA	1 cut(s)	554
GlaI	GCGC	2 cut(s)	554, 1960
GsaI	CCCAGC	4 cut(s)	366, 1707, 2615, 2668
GsuI	CTGGAG	1 cut(s)	2456
HaeIII	GGCC	5 cut(s)	1164, 1377, 1589, 2677, 3629
HapII	CCGG	5 cut(s)	844, 2323, 3058, 3547, 3607
HgaI	GACGC	2 cut(s)	1746, 2435
HhaI	GCGC	2 cut(s)	555, 1961
Hin6I	GCGC	2 cut(s)	553, 1959
HinP1I	GCGC	2 cut(s)	553, 1959
HincII	GTYRAC	2 cut(s)	1423, 3378
HindII	GTYRAC	2 cut(s)	1423, 3378
HindIII	AAGCTT	3 cut(s)	83, 1580, 3614
HpaII	CCGG	5 cut(s)	844, 2323, 3058, 3547, 3607
HphI	GGTGA	8 cut(s)	113, 512, 610, 977, 1345, 1354, 1478, 2293
Hpy166II	GTNNAC	6 cut(s)	152, 1277, 1423, 2896, 3019, 3378
Hpy8I	GTNNAC	6 cut(s)	152, 1277, 1423, 2896, 3019, 3378
Hpy99I	CGWCG	3 cut(s)	355, 2429, 3168
HpyAV	CCTTC	9 cut(s)	206, 277, 542, 1444, 1485, 2041, 2974, 3553, 3696
HpyCH4III	ACNGT	6 cut(s)	738, 1446, 1925, 2278, 2584, 2836
HpyCH4IV	ACGT	3 cut(s)	597, 626, 1023
HpySE526I	ACGT	3 cut(s)	597, 626, 1023
HspAI	GCGC	2 cut(s)	553, 1959
Kpn2I	TCCGGA	2 cut(s)	2322, 3606
Ksp22I	TGATCA	3 cut(s)	1387, 1717, 2878
KspI	CCGCGG	1 cut(s)	2906
LweI	GCATC	4 cut(s)	703, 2347, 2747, 3067
MaeI	CTAG	9 cut(s)	390, 1139, 1379, 1415, 1481, 1881, 2238, 2342, 3083
MaeII	ACGT	3 cut(s)	597, 626, 1023
MaeIII	GTNAC	7 cut(s)	94, 738, 1173, 1466, 1516, 3419, 3494
MfeI	CAATTG	3 cut(s)	872, 2742, 3646
MflI	RGATCY	7 cut(s)	64, 346, 528, 581, 1806, 2098, 3214
MhlI	GDGCHC	6 cut(s)	342, 1566, 1704, 1920, 2911, 3312
MlsI	TGGCCA	1 cut(s)	2677
MluNI	TGGCCA	1 cut(s)	2677
MlyI	GAGTC	6 cut(s)	1493, 2405, 2447, 2501, 3474, 3629
MmeI	TCCRAC	5 cut(s)	374, 1065, 1232, 1750, 3237
Mox20I	TGGCCA	1 cut(s)	2677
Mph1103I	ATGCAT	1 cut(s)	1396
MroI	TCCGGA	2 cut(s)	2322, 3606
MroXI	GAANNNNTTC	2 cut(s)	1146, 3563
MscI	TGGCCA	1 cut(s)	2677
MslI	CAYNNNNRTG	4 cut(s)	1534, 3417, 3447, 3492
Msp20I	TGGCCA	1 cut(s)	2677
MspA1I	CMGCKG	2 cut(s)	1194, 2905
MspCI	CTTAAG	1 cut(s)	1310
MspI	CCGG	5 cut(s)	844, 2323, 3058, 3547, 3607
MspR9I	CCNGG	8 cut(s)	896, 1898, 2081, 2156, 2388, 3023, 3228, 3548
MunI	CAATTG	3 cut(s)	872, 2742, 3646
MvaI	CCWGG	7 cut(s)	896, 1898, 2081, 2156, 2388, 3023, 3228
MvnI	CGCG	1 cut(s)	2905
NciI	CCSGG	1 cut(s)	3548
NdeI	CATATG	4 cut(s)	564, 1709, 2164, 2381
NmeAIII	GCCGAG	1 cut(s)	699
NmuCI	GTSAC	4 cut(s)	1466, 1516, 3419, 3494
NsbI	TGCGCA	1 cut(s)	554
NsiI	ATGCAT	1 cut(s)	1396
NspI	RCATGY	4 cut(s)	1690, 2064, 3067, 3446
OliI	CACNNNNGTG	2 cut(s)	1534, 3492
PaeI	GCATGC	1 cut(s)	3067
PagI	TCATGA	1 cut(s)	1720
PaqCI	CACCTGC	2 cut(s)	1852, 3364
PasI	CCCWGGG	1 cut(s)	2387
PceI	AGGCCT	1 cut(s)	1377
PdmI	GAANNNNTTC	2 cut(s)	1146, 3563
PfeI	GAWTC	9 cut(s)	29, 332, 746, 755, 878, 2335, 2695, 2805, 3152
PflFI	GACNNNGTC	1 cut(s)	2836
PflMI	CCANNNNNTGG	2 cut(s)	1084, 1710
PfoI	TCCNGGA	1 cut(s)	3226
PleI	GAGTC	6 cut(s)	1493, 2404, 2446, 2501, 3474, 3628
PpsI	GAGTC	6 cut(s)	1493, 2404, 2446, 2501, 3474, 3628
PshAI	GACNNNNGTC	1 cut(s)	487
PshBI	ATTAAT	1 cut(s)	1353
Psp124BI	GAGCTC	1 cut(s)	1566
Psp1406I	AACGTT	1 cut(s)	626
Psp6I	CCWGG	7 cut(s)	894, 1896, 2079, 2154, 2386, 3021, 3226
PspEI	GGTNACC	1 cut(s)	738
PspFI	CCCAGC	4 cut(s)	362, 1703, 2611, 2664
PspGI	CCWGG	7 cut(s)	894, 1896, 2079, 2154, 2386, 3021, 3226
PspPI	GGNCC	4 cut(s)	1197, 2320, 3604, 3628
PstI	CTGCAG	3 cut(s)	1786, 2098, 3643
PstNI	CAGNNNCTG	4 cut(s)	792, 1572, 1844, 3356
PsuI	RGATCY	7 cut(s)	64, 346, 528, 581, 1806, 2098, 3214
PsyI	GACNNNGTC	1 cut(s)	2836
RsaI	GTAC	6 cut(s)	377, 1190, 1458, 2433, 3020, 3266
RsaNI	GTAC	6 cut(s)	376, 1189, 1457, 2432, 3019, 3265
RseI	CAYNNNNRTG	4 cut(s)	1534, 3417, 3447, 3492
SacI	GAGCTC	1 cut(s)	1566
SacII	CCGCGG	1 cut(s)	2906
SalI	GTCGAC	1 cut(s)	3376
Sau96I	GGNCC	4 cut(s)	1197, 2320, 3604, 3628
SchI	GAGTC	6 cut(s)	1493, 2405, 2447, 2501, 3474, 3629
ScrFI	CCNGG	8 cut(s)	896, 1898, 2081, 2156, 2388, 3023, 3228, 3548
SduI	GDGCHC	6 cut(s)	342, 1566, 1704, 1920, 2911, 3312
SfaNI	GCATC	4 cut(s)	703, 2347, 2747, 3067
SfcI	CTRYAG	3 cut(s)	1782, 2094, 3639
Sfr303I	CCGCGG	1 cut(s)	2906
SgrBI	CCGCGG	1 cut(s)	2906
SinI	GGWCC	3 cut(s)	1197, 2320, 3604
SmiMI	CAYNNNNRTG	4 cut(s)	1534, 3417, 3447, 3492
SmlI	CTYRAG	7 cut(s)	904, 1310, 1406, 1550, 1619, 2558, 3617
SmoI	CTYRAG	7 cut(s)	904, 1310, 1406, 1550, 1619, 2558, 3617
SphI	GCATGC	1 cut(s)	3067
SseBI	AGGCCT	1 cut(s)	1377
SsiI	CCGC	7 cut(s)	11, 1194, 2058, 2257, 2903, 2905, 3555
SspI	AATATT	1 cut(s)	1820
SspMI	CTAG	9 cut(s)	390, 1139, 1379, 1415, 1481, 1881, 2238, 2342, 3083
SstI	GAGCTC	1 cut(s)	1566
StuI	AGGCCT	1 cut(s)	1377
StyD4I	CCNGG	8 cut(s)	894, 1896, 2079, 2154, 2386, 3021, 3226, 3546
StyI	CCWWGG	3 cut(s)	276, 2197, 2496
TaaI	ACNGT	6 cut(s)	738, 1446, 1925, 2278, 2584, 2836
TaiI	ACGT	3 cut(s)	600, 629, 1026
TaqI	TCGA	8 cut(s)	1093, 1113, 2399, 2643, 2808, 2973, 3312, 3377
TatI	WGTACW	4 cut(s)	375, 1188, 1456, 2431
TauI	GCSGC	1 cut(s)	2060
TfiI	GAWTC	9 cut(s)	29, 332, 746, 755, 878, 2335, 2695, 2805, 3152
TscAI	CASTG	9 cut(s)	450, 564, 1240, 1451, 1603, 1930, 2589, 3470, 3600
TseFI	GTSAC	4 cut(s)	1466, 1516, 3419, 3494
Tsp45I	GTSAC	4 cut(s)	1466, 1516, 3419, 3494
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	9 cut(s)	450, 564, 1240, 1451, 1603, 1930, 2589, 3470, 3600
Tth111I	GACNNNGTC	1 cut(s)	2836
Van91I	CCANNNNNTGG	2 cut(s)	1084, 1710
Vha464I	CTTAAG	1 cut(s)	1310
VpaK11BI	GGWCC	3 cut(s)	1197, 2320, 3604
VspI	ATTAAT	1 cut(s)	1353
XapI	RAATTY	6 cut(s)	173, 643, 976, 1977, 2483, 2591
XbaI	TCTAGA	1 cut(s)	3082
XceI	RCATGY	4 cut(s)	1690, 2064, 3067, 3446
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2661
XmiI	GTMKAC	1 cut(s)	3377
XmnI	GAANNNNTTC	2 cut(s)	1146, 3563
XspI	CTAG	9 cut(s)	390, 1139, 1379, 1415, 1481, 1881, 2238, 2342, 3083
Zsp2I	ATGCAT	1 cut(s)	1396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.