Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000546

Physical Location & Seq

Genomic Coordinates Forward (+)

63382492 .. 63386641

Gene Structure 4150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG321100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGATTTCGATTCAATGCTCTCAGCTCCCGCGGATAATCCCAGCAACTTGTACAAAGTAAATCCTATCAAGCATTCGTTATTGGAAGACACGATTTCTTCAGGTAATTATTTCAAAGCCGTAGGTGGTTTATATTTGTATGACTGTAGTAGTCTGTCAAAGTTTTTTTTTTTTCCTAGAGAGGATAAACCTTTGTTTTTTTTTTTAAATAATTTTTTTTATAATTATATGAACTTAATAGGTAGAACTATTTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

PP2C

Protein Analysis

101

Amino Acids

11.52

Weight (kDa)

6.53

Isoelectric Point (pI)

28.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica	MD14G1049300.v1.1
rosa_chinensis	RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata	RLG00000001164 RLG00000013941
rosa_multiflora	Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii	Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa	Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha	Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana	Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	222
AccII	CGCG	1 cut(s)	32
AciI	CCGC	2 cut(s)	30, 32
AcuI	CTGAAG	1 cut(s)	84
AfaI	GTAC	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	15, 115
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	93
BceAI	ACGGC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	145
BpiI	GAAGAC	1 cut(s)	93
BpuEI	CTTGAG	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	30
BseMII	CTCAG	1 cut(s)	36
BseYI	CCCAGC	1 cut(s)	41
Bsh1236I	CGCG	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	73
Bsp1407I	TGTACA	1 cut(s)	51
BspACI	CCGC	2 cut(s)	30, 32
BspCNI	CTCAG	1 cut(s)	35
BspFNI	CGCG	1 cut(s)	32
BsrGI	TGTACA	1 cut(s)	51
BssECI	CCNNGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	146
BstAUI	TGTACA	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	22
BstDSI	CCRYGG	1 cut(s)	30
BstFNI	CGCG	1 cut(s)	32
BstSFI	CTRYAG	1 cut(s)	145
BstUI	CGCG	1 cut(s)	32
BstV2I	GAAGAC	1 cut(s)	93
BtgI	CCRYGG	1 cut(s)	30
Cfr42I	CCGCGG	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	52
CviJI	RGCY	2 cut(s)	26, 119
CviKI_1	RGCY	2 cut(s)	26, 119
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	1 cut(s)	22
DraI	TTTAAA	1 cut(s)	207
Eco57I	CTGAAG	1 cut(s)	84
FaiI	YATR	5 cut(s)	133, 141, 222, 228, 230
FauI	CCCGC	1 cut(s)	37
FspBI	CTAG	1 cut(s)	177
GsaI	CCCAGC	1 cut(s)	45
HinfI	GANTC	1 cut(s)	11
HpyCH4III	ACNGT	1 cut(s)	146
HpyF3I	CTNAG	1 cut(s)	22
KspI	CCGCGG	1 cut(s)	33
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	2 cut(s)	55, 87
MaeI	CTAG	1 cut(s)	177
MboII	GAAGA	2 cut(s)	90, 98
MluCI	AATT	3 cut(s)	106, 211, 223
MnlI	CCTC	1 cut(s)	175
MseI	TTAA	2 cut(s)	206, 236
MspA1I	CMGCKG	1 cut(s)	32
Mva1269I	GAATGC	1 cut(s)	73
MvnI	CGCG	1 cut(s)	32
PctI	GAATGC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	11
PsiI	TTATAA	1 cut(s)	222
PspFI	CCCAGC	1 cut(s)	41
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SacII	CCGCGG	1 cut(s)	33
SaqAI	TTAA	2 cut(s)	206, 236
SetI	ASST	5 cut(s)	28, 106, 127, 193, 244
SfcI	CTRYAG	1 cut(s)	145
Sfr303I	CCGCGG	1 cut(s)	33
SgeI	CNNG	8 cut(s)	41, 43, 54, 61, 82, 103, 114, 189
SgrBI	CCGCGG	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	3 cut(s)	106, 211, 223
SsiI	CCGC	2 cut(s)	30, 32
SspMI	CTAG	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	146
TaqI	TCGA	1 cut(s)	9
TasI	AATT	3 cut(s)	106, 211, 223
TatI	WGTACW	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	2 cut(s)	206, 236
Tru9I	TTAA	2 cut(s)	206, 236
TspDTI	ATGAA	1 cut(s)	245
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.