Rorug06G0037500

phosphatase 2c

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
4710557 .. 4711139
583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0037500.1

Sequence Viewer

Length: 486 bp
ATGGAATTGTCTAAGATTTCATTATCCCTCATTTCCCTCATAGCCTTCGCCCTACTCCATTCCACTCATGCACAAAACTCACCCCAGGACTACCTCAATGCCCACAACAGTGCTCGAGCCGCCGTGGGCGTGGGAGGCTTGACATGGGACACTAATCTAGCCACTTATGCGCAAAGATATGCTAATTCACATATTGGTGATTGCAACCTGGTGCATTCTGGTGGGCCTTACGGCGAAAACCTTGCAAAGAGCACCGGCGACTTATCAGGCACATCTGCTGTGAACTTGTGGGTGGGAGAGAAGGCAAACTATGATTACAACTCTAACACATGTGCTTCTGGCAAGGTCTGTGGGCATTATACGCAGGTCGTTTGGCGCAACTCGGCACGTGTGGGGTGTGCCAAAGTGAGGTGCAACAATGGAGGTACTTTCATCGGGTGCAATTATGATCCCCGGGGAAACATCGTTGGTCAGAAGCCTTACTGA

Protein Analysis

161

Amino Acids

17.17

Weight (kDa)

8.54

Isoelectric Point (pI)

18.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 32 - 149 5.8e-18 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000546)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica MD14G1049300.v1.1
rosa_chinensis RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata RLG00000001164 RLG00000013941
rosa_multiflora Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 171
Acc36I ACCTGC 1 cut(s) 355
AciI CCGC 1 cut(s) 120
AclWI GGATC 1 cut(s) 443
AcvI CACGTG 1 cut(s) 389
AfaI GTAC 1 cut(s) 427
AfiI CCNNNNNNNGG 1 cut(s) 408
AflIII ACRYGT 2 cut(s) 329, 388
AjnI CCWGG 2 cut(s) 84, 207
AleI CACNNNNGTG 1 cut(s) 108
Alw21I GWGCWC 2 cut(s) 115, 254
AlwI GGATC 1 cut(s) 443
Ama87I CYCGRG 2 cut(s) 114, 453
AoxI GGCC 1 cut(s) 224
AspLEI GCGC 2 cut(s) 172, 378
AspS9I GGNCC 1 cut(s) 224
AsuC2I CCSGG 2 cut(s) 454, 455
AsuHPI GGTGA 2 cut(s) 72, 209
AvaI CYCGRG 2 cut(s) 114, 453
BbrPI CACGTG 1 cut(s) 389
Bbv12I GWGCWC 2 cut(s) 115, 254
BceAI ACGGC 2 cut(s) 107, 247
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BciT130I CCWGG 2 cut(s) 86, 209
BcnI CCSGG 2 cut(s) 454, 455
BfaI CTAG 1 cut(s) 158
BfuAI ACCTGC 1 cut(s) 355
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 4 cut(s) 86, 209, 454, 455
BmeT110I CYCGRG 2 cut(s) 114, 453
BmgT120I GGNCC 1 cut(s) 224
BmrFI CCNGG 4 cut(s) 86, 209, 454, 455
BpuMI CCSGG 2 cut(s) 454, 455
BsaAI YACGTR 1 cut(s) 389
BsaJI CCNNGG 5 cut(s) 84, 123, 452, 453, 454
Bsc4I CCNNNNNNNGG 1 cut(s) 408
Bse118I RCCGGY 1 cut(s) 254
BseBI CCWGG 2 cut(s) 86, 209
BseDI CCNNGG 5 cut(s) 84, 123, 452, 453, 454
BseLI CCNNNNNNNGG 1 cut(s) 408
BshFI GGCC 1 cut(s) 226
BsiHKAI GWGCWC 2 cut(s) 115, 254
BsiHKCI CYCGRG 2 cut(s) 114, 453
BsiSI CCGG 2 cut(s) 255, 454
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 408
BsmFI GGGAC 1 cut(s) 161
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 1 cut(s) 226
BsoBI CYCGRG 2 cut(s) 114, 453
Bsp1286I GDGCHC 2 cut(s) 115, 254
Bsp143I GATC 1 cut(s) 448
BspACI CCGC 1 cut(s) 120
BspANI GGCC 1 cut(s) 226
BspMI ACCTGC 1 cut(s) 355
BspPI GGATC 1 cut(s) 443
BsrFI RCCGGY 1 cut(s) 254
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 5 cut(s) 84, 123, 452, 453, 454
BssMI GATC 1 cut(s) 448
Bst2UI CCWGG 2 cut(s) 86, 209
Bst4CI ACNGT 1 cut(s) 110
BstBAI YACGTR 1 cut(s) 389
BstDEI CTNAG 1 cut(s) 12
BstDSI CCRYGG 1 cut(s) 123
BstHHI GCGC 2 cut(s) 172, 378
BstKTI GATC 1 cut(s) 451
BstMBI GATC 1 cut(s) 448
BstMWI GCNNNNNNNGC 4 cut(s) 119, 135, 167, 361
BstNI CCWGG 2 cut(s) 86, 209
BstNSI RCATGY 1 cut(s) 333
BstSCI CCNGG 4 cut(s) 84, 207, 452, 453
BsuRI GGCC 1 cut(s) 226
BtgI CCRYGG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 115
BveI ACCTGC 1 cut(s) 355
CfoI GCGC 2 cut(s) 172, 378
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 224
Cfr9I CCCGGG 1 cut(s) 453
CsiI ACCWGGT 1 cut(s) 207
Csp6I GTAC 1 cut(s) 426
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviAII CATG 3 cut(s) 68, 144, 330
CviJI RGCY 6 cut(s) 44, 119, 138, 161, 226, 478
CviKI_1 RGCY 6 cut(s) 44, 119, 138, 161, 226, 478
CviQI GTAC 1 cut(s) 426
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
Eco72I CACGTG 1 cut(s) 389
Eco88I CYCGRG 2 cut(s) 114, 453
EcoRII CCWGG 2 cut(s) 84, 207
FaeI CATG 3 cut(s) 71, 147, 333
FaqI GGGAC 1 cut(s) 161
FatI CATG 3 cut(s) 67, 143, 329
Fnu4HI GCNGC 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 1 cut(s) 158
FspI TGCGCA 1 cut(s) 171
GlaI GCGC 2 cut(s) 171, 377
GluI GCNGC 1 cut(s) 120
HaeIII GGCC 1 cut(s) 226
HapII CCGG 2 cut(s) 255, 454
HhaI GCGC 2 cut(s) 172, 378
Hin1II CATG 3 cut(s) 71, 147, 333
Hin6I GCGC 2 cut(s) 170, 376
HinP1I GCGC 2 cut(s) 170, 376
HpaII CCGG 2 cut(s) 255, 454
HphI GGTGA 2 cut(s) 72, 209
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 1 cut(s) 474
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 2 cut(s) 55, 295
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4IV ACGT 1 cut(s) 388
HpyCH4V TGCA 6 cut(s) 71, 204, 214, 245, 414, 441
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 135, 167, 361
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 388
Hsp92II CATG 3 cut(s) 71, 147, 333
HspAI GCGC 2 cut(s) 170, 376
Kzo9I GATC 1 cut(s) 448
MabI ACCWGGT 1 cut(s) 207
MaeI CTAG 1 cut(s) 158
MaeII ACGT 1 cut(s) 388
MalI GATC 1 cut(s) 450
MboI GATC 1 cut(s) 448
MhlI GDGCHC 2 cut(s) 115, 254
MluCI AATT 3 cut(s) 5, 184, 442
MnlI CCTC 6 cut(s) 38, 47, 104, 128, 402, 416
MslI CAYNNNNRTG 3 cut(s) 108, 195, 219
MspI CCGG 2 cut(s) 255, 454
MspR9I CCNGG 4 cut(s) 86, 209, 454, 455
Mva1269I GAATGC 1 cut(s) 214
MvaI CCWGG 2 cut(s) 86, 209
MwoI GCNNNNNNNGC 4 cut(s) 119, 135, 167, 361
NciI CCSGG 2 cut(s) 454, 455
NdeII GATC 1 cut(s) 448
NlaIII CATG 3 cut(s) 71, 147, 333
NmeAIII GCCGAG 1 cut(s) 362
NsbI TGCGCA 1 cut(s) 171
NspI RCATGY 1 cut(s) 333
OliI CACNNNNGTG 1 cut(s) 108
PaeR7I CTCGAG 1 cut(s) 114
PciI ACATGT 1 cut(s) 329
PctI GAATGC 1 cut(s) 214
PkrI GCNGC 1 cut(s) 121
PmaCI CACGTG 1 cut(s) 389
PmlI CACGTG 1 cut(s) 389
Ppu21I YACGTR 1 cut(s) 389
PscI ACATGT 1 cut(s) 329
Psp6I CCWGG 2 cut(s) 84, 207
PspCI CACGTG 1 cut(s) 389
PspGI CCWGG 2 cut(s) 84, 207
PspPI GGNCC 1 cut(s) 224
PspXI VCTCGAGB 1 cut(s) 114
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
RseI CAYNNNNRTG 3 cut(s) 108, 195, 219
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 448
Sau96I GGNCC 1 cut(s) 224
ScrFI CCNGG 4 cut(s) 86, 209, 454, 455
SduI GDGCHC 2 cut(s) 115, 254
SetI ASST 8 cut(s) 96, 210, 243, 348, 369, 391, 413, 427
SexAI ACCWGGT 1 cut(s) 207
Sfr274I CTCGAG 1 cut(s) 114
SgrAI CRCCGGYG 1 cut(s) 254
SlaI CTCGAG 1 cut(s) 114
SmaI CCCGGG 1 cut(s) 455
SmiMI CAYNNNNRTG 3 cut(s) 108, 195, 219
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
Sse9I AATT 3 cut(s) 5, 184, 442
SsiI CCGC 1 cut(s) 120
SspMI CTAG 1 cut(s) 158
StyD4I CCNGG 4 cut(s) 84, 207, 452, 453
TaaI ACNGT 1 cut(s) 110
TaiI ACGT 1 cut(s) 391
TaqI TCGA 1 cut(s) 115
TasI AATT 3 cut(s) 5, 184, 442
TauI GCSGC 1 cut(s) 122
TscAI CASTG 1 cut(s) 115
TspDTI ATGAA 2 cut(s) 9, 421
TspMI CCCGGG 1 cut(s) 453
TspRI CASTG 1 cut(s) 115
XceI RCATGY 1 cut(s) 333
XhoI CTCGAG 1 cut(s) 114
XmaI CCCGGG 1 cut(s) 453
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.