RchiOBHm_Chr6g0255111

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000546
Physical Location & Seq
Reverse (-)
10358752 .. 10359799
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22884

Sequence Viewer

Length: 903 bp
ATGGACAGGCTCACTGCTCTACGACATCTCGATTTTGATATCATCAGACAACTGGATTTCATGCCTGCTTACTTGGGAAACTTGAGGAACCTTCAGACTTTGTCAGCATTTCTTGTGGGTAGAGATGATAGGCGCCGTATCCGAGAGCTGAAGTATTTAAATTATCTTGGAGGAGCACTTCGCATTTTTCGGCTCGAAAATGTGTTGAGCAAGGCAGACGCTGAGGCAGTGGATTTGAAAAACAAGAAAAGACTGCAGAGGTTAGATTTCCGATGGACTAAACTGATGGGTGAGAAAGAAAATAAGATGCAAGAAGAGATCCTCGACTCTCTCCGACCCCCTACGGGTCTTAAAGAGTTGCAGATATTGTTCTACAGTGGAACAAAATTCCCATCTTGGTTGAGCGATACATCTATTACTGACCTTGTTGTCATCACCCTCTACAAATGTGCAAACTGTGAGCATCTCCCATCTCTCGGTCGATTACCAAACCTTAAGTTTCTTTCAATTGTAGAGGTGAATGAGGTGAAGGAAATCGCTCCGACATTTTTCAGAAGTCTTGATCACCCAAAATCCTTGAAGGCGTTTCCAAAACTTGAGATACTAGAGGTTGACAGCATGCTTCATTTGAAAGACTGGAAGGAAGTACAAGAAGGTGATTTGGAGTCCCTCATTAAACTCACAATGGAGTCTTGCCCTGAACTTGTTACTGTTCCATCATTTTCAGGCCTCAAAATCCTCAAGTATTTAGAGTTTAACCACTGCCCAGAGCTTCTTTCATTGGACTGCAATGCGGTTCCAACTTCACTCGAGTCTTTAATAATACGAGACTGCCCGAAACTGAAAGAATCGTGGCCCAAGGAGGGACATCAAGATTTGAGGGAACTTGAGTCATGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 ko04016 ko04075 ko04931 map04014 map04016 map04075 map04931
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

300

Amino Acids

34.71

Weight (kDa)

6.35

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 3 - 211 5.2e-13 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 47 - 172 7.1e-40 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000546)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica MD14G1049300.v1.1
rosa_chinensis RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata RLG00000001164 RLG00000013941
rosa_multiflora Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 428
AccB1I GGYRCC 1 cut(s) 132
AciI CCGC 1 cut(s) 794
AclWI GGATC 1 cut(s) 313
AcsI RAATTY 1 cut(s) 386
AcuI CTGAAG 2 cut(s) 77, 170
AcyI GRCGYC 1 cut(s) 133
AfaI GTAC 1 cut(s) 648
AfiI CCNNNNNNNGG 3 cut(s) 344, 476, 863
AflII CTTAAG 1 cut(s) 494
AgsI TTSAA 4 cut(s) 238, 507, 580, 631
AluBI AGCT 2 cut(s) 148, 772
AluI AGCT 2 cut(s) 148, 772
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 1 cut(s) 822
AlwI GGATC 1 cut(s) 313
AlwNI CAGNNNCTG 1 cut(s) 221
Ama87I CYCGRG 1 cut(s) 809
AoxI GGCC 2 cut(s) 727, 854
ApoI RAATTY 1 cut(s) 386
AspLEI GCGC 1 cut(s) 135
AspS9I GGNCC 1 cut(s) 855
AsuHPI GGTGA 6 cut(s) 302, 427, 529, 538, 557, 668
AvaI CYCGRG 1 cut(s) 809
BanI GGYRCC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 178
BbvCI CCTCAGC 1 cut(s) 222
BccI CCATC 5 cut(s) 267, 280, 400, 478, 724
BceAI ACGGC 1 cut(s) 120
BciVI GTATCC 1 cut(s) 149
BclI TGATCA 1 cut(s) 562
BcoDI GTCTC 1 cut(s) 822
BfaI CTAG 1 cut(s) 605
BfmI CTRYAG 2 cut(s) 254, 373
BfoI RGCGCY 1 cut(s) 136
BfrI CTTAAG 1 cut(s) 494
BfuI GTATCC 1 cut(s) 149
BmeT110I CYCGRG 1 cut(s) 809
BmgT120I GGNCC 1 cut(s) 855
BmiI GGNNCC 3 cut(s) 89, 134, 798
BmsI GCATC 2 cut(s) 297, 472
Bpu10I CCTNAGC 1 cut(s) 222
BpuEI CTTGAG 3 cut(s) 103, 617, 725
BsaHI GRCGYC 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 858
Bsc4I CCNNNNNNNGG 3 cut(s) 344, 476, 863
Bse1I ACTGG 2 cut(s) 57, 641
Bse3DI GCAATG 1 cut(s) 796
BseDI CCNNGG 1 cut(s) 858
BseLI CCNNNNNNNGG 3 cut(s) 344, 476, 863
BseMI GCAATG 1 cut(s) 796
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 2 cut(s) 57, 641
BseRI GAGGAG 1 cut(s) 186
Bsh1285I CGRYCG 1 cut(s) 481
BshFI GGCC 2 cut(s) 729, 856
BshNI GGYRCC 1 cut(s) 132
BsiEI CGRYCG 1 cut(s) 481
BsiHKAI GWGCWC 1 cut(s) 178
BsiHKCI CYCGRG 1 cut(s) 809
BslFI GGGAC 2 cut(s) 652, 879
BslI CCNNNNNNNGG 3 cut(s) 344, 476, 863
BsmAI GTCTC 1 cut(s) 822
BsmFI GGGAC 2 cut(s) 652, 879
BsnI GGCC 2 cut(s) 729, 856
BsoBI CYCGRG 1 cut(s) 809
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 2 cut(s) 318, 562
BspACI CCGC 1 cut(s) 794
BspANI GGCC 2 cut(s) 729, 856
BspCNI CTCAG 1 cut(s) 214
BspLI GGNNCC 3 cut(s) 89, 134, 798
BspMAI CTGCAG 1 cut(s) 258
BspPI GGATC 1 cut(s) 313
BspT107I GGYRCC 1 cut(s) 132
BspTI CTTAAG 1 cut(s) 494
BsrDI GCAATG 1 cut(s) 796
BsrI ACTGG 2 cut(s) 57, 641
BssECI CCNNGG 1 cut(s) 858
BssMI GATC 2 cut(s) 318, 562
BssNI GRCGYC 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 858
Bst4CI ACNGT 3 cut(s) 377, 458, 712
Bst6I CTCTTC 1 cut(s) 309
BstACI GRCGYC 1 cut(s) 133
BstAFI CTTAAG 1 cut(s) 494
BstC8I GCNNGC 2 cut(s) 66, 620
BstDEI CTNAG 2 cut(s) 222, 900
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 2 cut(s) 321, 565
BstMAI GTCTC 1 cut(s) 822
BstMBI GATC 2 cut(s) 318, 562
BstMCI CGRYCG 1 cut(s) 481
BstNSI RCATGY 1 cut(s) 622
BstSFI CTRYAG 2 cut(s) 254, 373
BstX2I RGATCY 1 cut(s) 318
BstYI RGATCY 1 cut(s) 318
BsuI GTATCC 1 cut(s) 149
BsuRI GGCC 2 cut(s) 729, 856
BtsI GCAGTG 3 cut(s) 12, 234, 760
BtsIMutI CAGTG 4 cut(s) 12, 234, 382, 760
Cac8I GCNNGC 2 cut(s) 66, 620
CaiI CAGNNNCTG 1 cut(s) 221
CfoI GCGC 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 855
CseI GACGC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 647
CviAII CATG 3 cut(s) 61, 619, 894
CviJI RGCY 6 cut(s) 10, 148, 193, 729, 772, 856
CviKI_1 RGCY 6 cut(s) 10, 148, 193, 729, 772, 856
CviQI GTAC 1 cut(s) 647
DdeI CTNAG 2 cut(s) 222, 900
DinI GGCGCC 1 cut(s) 134
DpnI GATC 2 cut(s) 320, 564
DpnII GATC 2 cut(s) 318, 562
DraI TTTAAA 1 cut(s) 159
DrdI GACNNNNNNGTC 1 cut(s) 428
DseDI GACNNNNNNGTC 1 cut(s) 428
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
Eco130I CCWWGG 1 cut(s) 858
Eco147I AGGCCT 1 cut(s) 729
Eco32I GATATC 1 cut(s) 40
Eco57I CTGAAG 2 cut(s) 77, 170
Eco88I CYCGRG 1 cut(s) 809
EcoRV GATATC 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 858
EgeI GGCGCC 1 cut(s) 134
EheI GGCGCC 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 858
FaeI CATG 3 cut(s) 64, 622, 897
FaiI YATR 3 cut(s) 62, 620, 895
FaqI GGGAC 2 cut(s) 652, 879
FatI CATG 3 cut(s) 60, 618, 893
FbaI TGATCA 1 cut(s) 562
FspBI CTAG 1 cut(s) 605
GlaI GCGC 1 cut(s) 134
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 2 cut(s) 729, 856
HgaI GACGC 1 cut(s) 227
HhaI GCGC 1 cut(s) 135
Hin1I GRCGYC 1 cut(s) 133
Hin1II CATG 3 cut(s) 64, 622, 897
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HincII GTYRAC 1 cut(s) 613
HindII GTYRAC 1 cut(s) 613
HinfI GANTC 6 cut(s) 326, 665, 689, 812, 848, 890
HphI GGTGA 6 cut(s) 302, 427, 529, 538, 557, 668
Hpy166II GTNNAC 1 cut(s) 613
Hpy188I TCNGA 7 cut(s) 47, 96, 143, 272, 335, 543, 554
Hpy188III TCNNGA 3 cut(s) 29, 560, 872
Hpy8I GTNNAC 1 cut(s) 613
HpyAV CCTTC 5 cut(s) 101, 523, 574, 634, 647
HpyCH4III ACNGT 3 cut(s) 377, 458, 712
HpyCH4V TGCA 5 cut(s) 256, 310, 361, 452, 789
HpyF3I CTNAG 2 cut(s) 222, 900
Hsp92I GRCGYC 1 cut(s) 133
Hsp92II CATG 3 cut(s) 64, 622, 897
HspAI GCGC 1 cut(s) 133
KasI GGCGCC 1 cut(s) 132
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 2 cut(s) 318, 562
LmnI GCTCC 2 cut(s) 173, 544
LpnPI CCDG 6 cut(s) 38, 78, 622, 711, 711, 780
LweI GCATC 2 cut(s) 297, 472
MaeI CTAG 1 cut(s) 605
MaeIII GTNAC 1 cut(s) 706
MalI GATC 2 cut(s) 320, 564
MboI GATC 2 cut(s) 318, 562
MboII GAAGA 1 cut(s) 326
MfeI CAATTG 1 cut(s) 507
MflI RGATCY 1 cut(s) 318
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 3 cut(s) 160, 386, 507
Mly113I GGCGCC 1 cut(s) 133
MlyI GAGTC 5 cut(s) 320, 674, 698, 821, 899
MmeI TCCRAC 3 cut(s) 358, 566, 824
MseI TTAA 6 cut(s) 158, 351, 495, 675, 756, 818
MspCI CTTAAG 1 cut(s) 494
MunI CAATTG 1 cut(s) 507
NarI GGCGCC 1 cut(s) 133
NdeII GATC 2 cut(s) 318, 562
NlaIII CATG 3 cut(s) 64, 622, 897
NlaIV GGNNCC 3 cut(s) 89, 134, 798
NspI RCATGY 1 cut(s) 622
PaeI GCATGC 1 cut(s) 622
PaeR7I CTCGAG 1 cut(s) 809
PceI AGGCCT 1 cut(s) 729
PfeI GAWTC 1 cut(s) 848
PflFI GACNNNGTC 1 cut(s) 100
PleI GAGTC 5 cut(s) 320, 673, 697, 820, 898
PluTI GGCGCC 1 cut(s) 136
PpsI GAGTC 5 cut(s) 320, 673, 697, 820, 898
PspN4I GGNNCC 3 cut(s) 89, 134, 798
PspPI GGNCC 1 cut(s) 855
PspXI VCTCGAGB 1 cut(s) 809
PstI CTGCAG 1 cut(s) 258
PstNI CAGNNNCTG 1 cut(s) 221
PsuI RGATCY 1 cut(s) 318
PsyI GACNNNGTC 1 cut(s) 100
RsaI GTAC 1 cut(s) 648
RsaNI GTAC 1 cut(s) 647
SaqAI TTAA 6 cut(s) 158, 351, 495, 675, 756, 818
Sau3AI GATC 2 cut(s) 318, 562
Sau96I GGNCC 1 cut(s) 855
SchI GAGTC 5 cut(s) 320, 674, 698, 821, 899
SduI GDGCHC 1 cut(s) 178
SfaNI GCATC 2 cut(s) 297, 472
SfcI CTRYAG 2 cut(s) 254, 373
SfoI GGCGCC 1 cut(s) 134
Sfr274I CTCGAG 1 cut(s) 809
SlaI CTCGAG 1 cut(s) 809
SmiI ATTTAAAT 1 cut(s) 159
SmlI CTYRAG 6 cut(s) 82, 494, 596, 740, 809, 887
SmoI CTYRAG 6 cut(s) 82, 494, 596, 740, 809, 887
SphI GCATGC 1 cut(s) 622
Sse9I AATT 3 cut(s) 160, 386, 507
SseBI AGGCCT 1 cut(s) 729
SsiI CCGC 1 cut(s) 794
SspDI GGCGCC 1 cut(s) 132
SspMI CTAG 1 cut(s) 605
StuI AGGCCT 1 cut(s) 729
StyI CCWWGG 1 cut(s) 858
SwaI ATTTAAAT 1 cut(s) 159
TaaI ACNGT 3 cut(s) 377, 458, 712
TaqI TCGA 5 cut(s) 30, 195, 324, 481, 810
TaqII GACCGA 1 cut(s) 467
TasI AATT 3 cut(s) 160, 386, 507
TatI WGTACW 1 cut(s) 646
TfiI GAWTC 1 cut(s) 848
Tru1I TTAA 6 cut(s) 158, 351, 495, 675, 756, 818
Tru9I TTAA 6 cut(s) 158, 351, 495, 675, 756, 818
TscAI CASTG 4 cut(s) 19, 234, 382, 767
TspDTI ATGAA 3 cut(s) 49, 614, 768
TspRI CASTG 4 cut(s) 19, 234, 382, 767
Tth111I GACNNNGTC 1 cut(s) 100
Vha464I CTTAAG 1 cut(s) 494
XapI RAATTY 1 cut(s) 386
XceI RCATGY 1 cut(s) 622
XhoI CTCGAG 1 cut(s) 809
XspI CTAG 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.