Rmu_sc0003304.1_g000041

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003304.1
OG0000546
Physical Location & Seq
Reverse (-)
193577 .. 194774
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003304.1_g000041.1.cds

Sequence Viewer

Length: 1044 bp
atggctttcggtgttattcagaaatttaagaatctgcgcaccttacttcttctcgctggttgtcagtcttccatcaaatgtgttcctgctgatttatttttgagcttaaagtttttgagtacactgaatttgagtggaacgctcatttctagattgcctggttctattggagatgtcaagcctttacgatatattgatctctcacgtacgcctctttccaggttgccggactctatctgttctcttgaccagttacaaaccttgaaactcagagatgggcaccgcatccaagagctgaagaatttaaatgatcttacaggagcgctttgcattttaaatcttgaaaatgtgttgagtacgacagatgttaaggaagcatatctgactagcaaaaaacacctgcagaggttggatctcgaatggatttctctatttgctgaaaatacaaagctgcaagaggacatcattgattctcttcgacccccttccactcttgaagaattaaatatattatcttatagtgggacaaaacttccatcttggttgagccatcggtcatttgctgaccttattgtgattaccctcgtcaattgtgcatactgtgaactttttccatctcttggtcagttaccagcgctgaagtttctttctgttgtgaacatggatgccgtcaaagaaattgatcagacatttttcagaagtgcccatgaaccagttgatcaagcaatccaagcatttccaaaactcgagatactagaagttgacaccatgcctaatttgcaagagtggaaggaagtaaaagaaggtgatttgccatcacttcttcaactcaaaatggagtgctgtccacaacttgtcactcttacatcatttttacacctcaaatccttgaagtatttaaagctgattgaatgcccaaagcttgtgctatcggaccacagtaaactaccaacttcactagagtctatgttaataggagatagctgtgaactgaaaagttggtgccgcaacgggggagatcaagaattgcagctggaaagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 ko04016 ko04075 ko04931 map04014 map04016 map04075 map04931
Pfam Domains
Protein Families
LRR_8 NB-ARC PP2C TIR VQ

Protein Analysis

347

Amino Acids

39.08

Weight (kDa)

5.78

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000546)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica MD14G1049300.v1.1
rosa_chinensis RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata RLG00000001164 RLG00000013941
rosa_multiflora Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 408
Acc16I TGCGCA 1 cut(s) 38
Acc36I ACCTGC 1 cut(s) 408
AccB1I GGYRCC 2 cut(s) 279, 1002
AccB7I CCANNNNNTGG 1 cut(s) 620
AciI CCGC 2 cut(s) 283, 1006
AclWI GGATC 1 cut(s) 420
AcsI RAATTY 3 cut(s) 23, 127, 301
AcuI CTGAAG 2 cut(s) 317, 659
AfaI GTAC 3 cut(s) 121, 208, 358
AfeI AGCGCT 2 cut(s) 324, 636
AfiI CCNNNNNNNGG 2 cut(s) 620, 1012
AgsI TTSAA 6 cut(s) 265, 344, 497, 827, 892, 911
AjnI CCWGG 2 cut(s) 157, 218
AluBI AGCT 7 cut(s) 105, 295, 451, 904, 922, 984, 1033
AluI AGCT 7 cut(s) 105, 295, 451, 904, 922, 984, 1033
AlwI GGATC 1 cut(s) 420
Ama87I CYCGRG 1 cut(s) 746
Aor51HI AGCGCT 2 cut(s) 324, 636
ApeKI GCWGC 2 cut(s) 451, 1030
ApoI RAATTY 3 cut(s) 23, 127, 301
Asp700I GAANNNNTTC 1 cut(s) 609
AspLEI GCGC 3 cut(s) 39, 325, 637
AspS9I GGNCC 1 cut(s) 934
AsuHPI GGTGA 1 cut(s) 818
AvaI CYCGRG 1 cut(s) 746
AvaII GGWCC 1 cut(s) 934
BaeGI GKGCMC 2 cut(s) 282, 706
BanI GGYRCC 2 cut(s) 279, 1002
BbsI GAAGAC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 438
BccI CCATC 6 cut(s) 80, 269, 544, 558, 622, 823
BceAI ACGGC 1 cut(s) 653
BciT130I CCWGG 2 cut(s) 159, 220
BclI TGATCA 2 cut(s) 682, 718
BfaI CTAG 4 cut(s) 150, 387, 755, 959
BfmI CTRYAG 1 cut(s) 401
BfoI RGCGCY 2 cut(s) 326, 638
BfuAI ACCTGC 1 cut(s) 408
BisI GCNGC 3 cut(s) 452, 1006, 1031
BlsI GCNGC 3 cut(s) 453, 1007, 1032
Bme1390I CCNGG 2 cut(s) 159, 220
Bme18I GGWCC 1 cut(s) 934
BmeT110I CYCGRG 1 cut(s) 746
BmgT120I GGNCC 1 cut(s) 934
BmiI GGNNCC 2 cut(s) 281, 1004
BmrFI CCNGG 2 cut(s) 159, 220
BmsI GCATC 2 cut(s) 294, 655
BpiI GAAGAC 1 cut(s) 60
BsaAI YACGTR 1 cut(s) 206
Bsc4I CCNNNNNNNGG 2 cut(s) 620, 1012
Bse1I ACTGG 2 cut(s) 250, 713
BseBI CCWGG 2 cut(s) 159, 220
BseGI GGATG 2 cut(s) 285, 670
BseLI CCNNNNNNNGG 2 cut(s) 620, 1012
BseMII CTCAG 1 cut(s) 283
BseNI ACTGG 2 cut(s) 250, 713
BseSI GKGCMC 2 cut(s) 282, 706
BseXI GCAGC 1 cut(s) 438
BshNI GGYRCC 2 cut(s) 279, 1002
BsiHKCI CYCGRG 1 cut(s) 746
BsiSI CCGG 1 cut(s) 227
BsiWI CGTACG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 538
BslI CCNNNNNNNGG 2 cut(s) 620, 1012
BsmFI GGGAC 1 cut(s) 538
BsmI GAATGC 1 cut(s) 917
BsoBI CYCGRG 1 cut(s) 746
Bsp1286I GDGCHC 2 cut(s) 282, 706
Bsp143I GATC 6 cut(s) 196, 310, 412, 682, 718, 1018
BspACI CCGC 2 cut(s) 283, 1006
BspCNI CTCAG 1 cut(s) 282
BspLI GGNNCC 2 cut(s) 281, 1004
BspMAI CTGCAG 1 cut(s) 405
BspMI ACCTGC 1 cut(s) 408
BspPI GGATC 1 cut(s) 420
BspT107I GGYRCC 2 cut(s) 279, 1002
BsrI ACTGG 2 cut(s) 250, 713
BssMI GATC 6 cut(s) 196, 310, 412, 682, 718, 1018
Bst2UI CCWGG 2 cut(s) 159, 220
Bst4CI ACNGT 2 cut(s) 602, 941
Bst6I CTCTTC 1 cut(s) 480
BstBAI YACGTR 1 cut(s) 206
BstDEI CTNAG 1 cut(s) 269
BstF5I GGATG 2 cut(s) 285, 670
BstH2I RGCGCY 2 cut(s) 326, 638
BstHHI GCGC 3 cut(s) 39, 325, 637
BstKTI GATC 6 cut(s) 199, 313, 415, 685, 721, 1021
BstMBI GATC 6 cut(s) 196, 310, 412, 682, 718, 1018
BstMWI GCNNNNNNNGC 2 cut(s) 731, 778
BstNI CCWGG 2 cut(s) 159, 220
BstSCI CCNGG 2 cut(s) 157, 218
BstSFI CTRYAG 1 cut(s) 401
BstSLI GKGCMC 2 cut(s) 282, 706
BstV1I GCAGC 1 cut(s) 438
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BtsCI GGATG 2 cut(s) 285, 670
BtsIMutI CAGTG 1 cut(s) 122
BveI ACCTGC 1 cut(s) 408
CfoI GCGC 3 cut(s) 39, 325, 637
Cfr13I GGNCC 1 cut(s) 934
Csp6I GTAC 3 cut(s) 120, 207, 357
CviAII CATG 3 cut(s) 661, 707, 769
CviQI GTAC 3 cut(s) 120, 207, 357
DdeI CTNAG 1 cut(s) 269
DpnI GATC 6 cut(s) 198, 312, 414, 684, 720, 1020
DpnII GATC 6 cut(s) 196, 310, 412, 682, 718, 1018
DraI TTTAAA 3 cut(s) 306, 336, 900
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco47I GGWCC 1 cut(s) 934
Eco47III AGCGCT 2 cut(s) 324, 636
Eco57I CTGAAG 2 cut(s) 317, 659
Eco88I CYCGRG 1 cut(s) 746
EcoRII CCWGG 2 cut(s) 157, 218
FaeI CATG 3 cut(s) 664, 710, 772
FaiI YATR 9 cut(s) 192, 379, 509, 519, 598, 662, 708, 770, 968
FaqI GGGAC 1 cut(s) 538
FatI CATG 3 cut(s) 660, 706, 768
FbaI TGATCA 2 cut(s) 682, 718
Fnu4HI GCNGC 3 cut(s) 452, 1006, 1031
FokI GGATG 2 cut(s) 272, 677
Fsp4HI GCNGC 3 cut(s) 452, 1006, 1031
FspBI CTAG 4 cut(s) 150, 387, 755, 959
FspI TGCGCA 1 cut(s) 38
GlaI GCGC 3 cut(s) 38, 324, 636
GluI GCNGC 3 cut(s) 452, 1006, 1031
HaeII RGCGCY 2 cut(s) 326, 638
HapII CCGG 1 cut(s) 227
HhaI GCGC 3 cut(s) 39, 325, 637
Hin1II CATG 3 cut(s) 664, 710, 772
Hin6I GCGC 3 cut(s) 37, 323, 635
HinP1I GCGC 3 cut(s) 37, 323, 635
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HindIII AAGCTT 1 cut(s) 920
HinfI GANTC 4 cut(s) 31, 230, 470, 962
HpaII CCGG 1 cut(s) 227
HphI GGTGA 1 cut(s) 818
Hpy166II GTNNAC 7 cut(s) 122, 605, 658, 763, 848, 944, 989
Hpy188I TCNGA 6 cut(s) 21, 272, 384, 687, 698, 934
Hpy188III TCNNGA 7 cut(s) 150, 245, 341, 416, 494, 748, 1022
Hpy8I GTNNAC 7 cut(s) 122, 605, 658, 763, 848, 944, 989
HpyAV CCTTC 3 cut(s) 495, 784, 797
HpyCH4III ACNGT 2 cut(s) 602, 941
HpyCH4IV ACGT 1 cut(s) 205
HpyCH4V TGCA 6 cut(s) 330, 403, 454, 596, 781, 1030
HpyF10VI GCNNNNNNNGC 2 cut(s) 731, 778
HpyF3I CTNAG 1 cut(s) 269
HpySE526I ACGT 1 cut(s) 205
Hsp92II CATG 3 cut(s) 664, 710, 772
HspAI GCGC 3 cut(s) 37, 323, 635
Ksp22I TGATCA 2 cut(s) 682, 718
Kzo9I GATC 6 cut(s) 196, 310, 412, 682, 718, 1018
LmnI GCTCC 1 cut(s) 320
Lsp1109I GCAGC 1 cut(s) 438
LweI GCATC 2 cut(s) 294, 655
MaeI CTAG 4 cut(s) 150, 387, 755, 959
MaeII ACGT 1 cut(s) 205
MaeIII GTNAC 3 cut(s) 252, 627, 856
MalI GATC 6 cut(s) 198, 312, 414, 684, 720, 1020
MboI GATC 6 cut(s) 196, 310, 412, 682, 718, 1018
MboII GAAGA 6 cut(s) 41, 60, 310, 467, 509, 815
MfeI CAATTG 1 cut(s) 589
MflI RGATCY 1 cut(s) 412
MhlI GDGCHC 2 cut(s) 282, 706
MluCI AATT 8 cut(s) 23, 127, 301, 500, 589, 678, 775, 1025
MlyI GAGTC 2 cut(s) 224, 971
MmeI TCCRAC 1 cut(s) 390
MnlI CCTC 5 cut(s) 222, 399, 451, 593, 890
MroXI GAANNNNTTC 1 cut(s) 609
MseI TTAA 8 cut(s) 27, 107, 305, 335, 369, 503, 899, 971
MspA1I CMGCKG 1 cut(s) 1033
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 2 cut(s) 159, 220
MunI CAATTG 1 cut(s) 589
Mva1269I GAATGC 1 cut(s) 917
MvaI CCWGG 2 cut(s) 159, 220
MwoI GCNNNNNNNGC 2 cut(s) 731, 778
NdeII GATC 6 cut(s) 196, 310, 412, 682, 718, 1018
NlaIII CATG 3 cut(s) 664, 710, 772
NlaIV GGNNCC 2 cut(s) 281, 1004
NmuCI GTSAC 1 cut(s) 856
NsbI TGCGCA 1 cut(s) 38
PaeR7I CTCGAG 1 cut(s) 746
PaqCI CACCTGC 1 cut(s) 408
PctI GAATGC 1 cut(s) 917
PdmI GAANNNNTTC 1 cut(s) 609
PfeI GAWTC 2 cut(s) 31, 470
Pfl23II CGTACG 1 cut(s) 206
PflMI CCANNNNNTGG 1 cut(s) 620
PkrI GCNGC 3 cut(s) 453, 1007, 1032
PleI GAGTC 2 cut(s) 224, 970
PpsI GAGTC 2 cut(s) 224, 970
Ppu21I YACGTR 1 cut(s) 206
Psp6I CCWGG 2 cut(s) 157, 218
PspGI CCWGG 2 cut(s) 157, 218
PspLI CGTACG 1 cut(s) 206
PspN4I GGNNCC 2 cut(s) 281, 1004
PspPI GGNCC 1 cut(s) 934
PstI CTGCAG 1 cut(s) 405
PsuI RGATCY 1 cut(s) 412
PvuII CAGCTG 1 cut(s) 1033
RsaI GTAC 3 cut(s) 121, 208, 358
RsaNI GTAC 3 cut(s) 120, 207, 357
SaqAI TTAA 8 cut(s) 27, 107, 305, 335, 369, 503, 899, 971
SatI GCNGC 3 cut(s) 452, 1006, 1031
Sau3AI GATC 6 cut(s) 196, 310, 412, 682, 718, 1018
Sau96I GGNCC 1 cut(s) 934
SchI GAGTC 2 cut(s) 224, 971
ScrFI CCNGG 2 cut(s) 159, 220
SduI GDGCHC 2 cut(s) 282, 706
SfaNI GCATC 2 cut(s) 294, 655
SfcI CTRYAG 1 cut(s) 401
Sfr274I CTCGAG 1 cut(s) 746
SinI GGWCC 1 cut(s) 934
SlaI CTCGAG 1 cut(s) 746
SmiI ATTTAAAT 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 746
SmoI CTYRAG 1 cut(s) 746
Sse9I AATT 8 cut(s) 23, 127, 301, 500, 589, 678, 775, 1025
SsiI CCGC 2 cut(s) 283, 1006
SspMI CTAG 4 cut(s) 150, 387, 755, 959
StyD4I CCNGG 2 cut(s) 157, 218
SwaI ATTTAAAT 1 cut(s) 306
TaaI ACNGT 2 cut(s) 602, 941
TaiI ACGT 1 cut(s) 208
TaqI TCGA 3 cut(s) 417, 478, 747
TaqII GACCGA 1 cut(s) 543
TasI AATT 8 cut(s) 23, 127, 301, 500, 589, 678, 775, 1025
TatI WGTACW 1 cut(s) 119
TauI GCSGC 1 cut(s) 1008
TfiI GAWTC 2 cut(s) 31, 470
Tru1I TTAA 8 cut(s) 27, 107, 305, 335, 369, 503, 899, 971
Tru9I TTAA 8 cut(s) 27, 107, 305, 335, 369, 503, 899, 971
TscAI CASTG 1 cut(s) 129
TseFI GTSAC 1 cut(s) 856
TseI GCWGC 2 cut(s) 451, 1030
Tsp45I GTSAC 1 cut(s) 856
TspDTI ATGAA 1 cut(s) 723
TspRI CASTG 1 cut(s) 129
Van91I CCANNNNNTGG 1 cut(s) 620
VpaK11BI GGWCC 1 cut(s) 934
XapI RAATTY 3 cut(s) 23, 127, 301
XbaI TCTAGA 1 cut(s) 149
XhoI CTCGAG 1 cut(s) 746
XmnI GAANNNNTTC 1 cut(s) 609
XspI CTAG 4 cut(s) 150, 387, 755, 959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.