Rorug07G0290000

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000546
Physical Location & Seq
Forward (+)
28246600 .. 28248536
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0290000.1

Sequence Viewer

Length: 588 bp
ATGCAATGCCAAGCCAAGAGAAGACAAGTTTTGCTTGGGACGACTTTTGCTGCATTTTCTTTTCCGGAAATTTATTCAAAAAACATTGCATTGGCCGAGAATGAGGGTTTTCGTGTTTTCACCGATGATGTCAACAAGTTCCAGATATCAATTCCCCTAGACTGGCAAGTAGGCGCAGGAGAACCAAGTGGGTTCAAGTCAGTTACTGCTTTCTACCCGGAAGCGGGTTTTAGCTCAATTAGTGTCGTAATCACGGGGCTTGGTCCGGATTTTACAAAGATGGAATCCTTTGGCAAGGTTGAAGAATTTGCTGAGACTCTGGTCAGCGGATTAGATAGGAGCTGGCAAAGGCCGGCAGGAGTTTCAGCAAAACTCATAGATTGCAAATCATCTAAAGGGCTTTACTACATTGAGTATTCACTGCAAAATCCTGGTGATAGTATGAAGCACCTCTATTCAGCTCTTGGGATGGCAAGCAACGGCTGGTACAACAGATTATATACCGTCACCGGCCAGTTTGCAGAGGAAGAATCGGATAAGTACAGTTCCAAAATTGAGAAGGCTGTAAAATCCTTTAAGTTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 ko04016 ko04075 ko04931 map04014 map04016 map04075 map04931
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

195

Amino Acids

21.7

Weight (kDa)

5.93

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 35 - 194 2.8e-29 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000546)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica MD14G1049300.v1.1
rosa_chinensis RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata RLG00000001164 RLG00000013941
rosa_multiflora Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 64, 265
AciI CCGC 2 cut(s) 224, 327
AcoI YGGCCR 2 cut(s) 93, 511
AcsI RAATTY 2 cut(s) 69, 305
AfaI GTAC 2 cut(s) 488, 542
AfiI CCNNNNNNNGG 3 cut(s) 162, 223, 224
AgsI TTSAA 4 cut(s) 78, 196, 302, 583
AjnI CCWGG 1 cut(s) 430
AluBI AGCT 3 cut(s) 234, 342, 461
AluI AGCT 3 cut(s) 234, 342, 461
Alw26I GTCTC 1 cut(s) 308
AlwNI CAGNNNCTG 1 cut(s) 206
Aor13HI TCCGGA 2 cut(s) 64, 265
AoxI GGCC 3 cut(s) 93, 350, 511
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 2 cut(s) 69, 305
AspLEI GCGC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 1 cut(s) 218
AsuHPI GGTGA 3 cut(s) 112, 446, 499
AvaII GGWCC 1 cut(s) 263
BbsI GAAGAC 1 cut(s) 28
BbvI GCAGC 1 cut(s) 37
BccI CCATC 2 cut(s) 274, 463
BceAI ACGGC 1 cut(s) 496
BciT130I CCWGG 1 cut(s) 432
BcnI CCSGG 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 1 cut(s) 158
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 2 cut(s) 218, 432
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmrFI CCNGG 2 cut(s) 218, 432
BoxI GACNNNNGTC 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 28
BpuMI CCSGG 1 cut(s) 218
BsaWI WCCGGW 2 cut(s) 64, 265
Bsc4I CCNNNNNNNGG 3 cut(s) 162, 223, 224
Bse118I RCCGGY 2 cut(s) 352, 509
Bse1I ACTGG 2 cut(s) 167, 514
Bse3DI GCAATG 2 cut(s) 11, 84
BseAI TCCGGA 2 cut(s) 64, 265
BseBI CCWGG 1 cut(s) 432
BseGI GGATG 1 cut(s) 474
BseLI CCNNNNNNNGG 3 cut(s) 162, 223, 224
BseMI GCAATG 2 cut(s) 11, 84
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 2 cut(s) 167, 514
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 3 cut(s) 95, 352, 513
BsiSI CCGG 5 cut(s) 65, 218, 266, 353, 510
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 3 cut(s) 162, 223, 224
BsmAI GTCTC 1 cut(s) 308
BsmFI GGGAC 1 cut(s) 52
BsnI GGCC 3 cut(s) 95, 352, 513
Bsp13I TCCGGA 2 cut(s) 64, 265
BspACI CCGC 2 cut(s) 224, 327
BspANI GGCC 3 cut(s) 95, 352, 513
BspCNI CTCAG 1 cut(s) 304
BspEI TCCGGA 2 cut(s) 64, 265
BsrDI GCAATG 2 cut(s) 11, 84
BsrFI RCCGGY 2 cut(s) 352, 509
BsrI ACTGG 2 cut(s) 167, 514
BssAI RCCGGY 2 cut(s) 352, 509
Bst2UI CCWGG 1 cut(s) 432
Bst4CI ACNGT 2 cut(s) 505, 545
BstC8I GCNNGC 3 cut(s) 344, 354, 475
BstDEI CTNAG 1 cut(s) 312
BstF5I GGATG 1 cut(s) 474
BstHHI GCGC 1 cut(s) 176
BstMAI GTCTC 1 cut(s) 308
BstNI CCWGG 1 cut(s) 432
BstPAI GACNNNNGTC 1 cut(s) 320
BstSCI CCNGG 2 cut(s) 216, 430
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 28
BsuRI GGCC 3 cut(s) 95, 352, 513
BtsCI GGATG 1 cut(s) 474
BtsI GCAGTG 1 cut(s) 419
BtsIMutI CAGTG 1 cut(s) 419
Cac8I GCNNGC 3 cut(s) 344, 354, 475
CaiI CAGNNNCTG 1 cut(s) 206
CfoI GCGC 1 cut(s) 176
Cfr10I RCCGGY 2 cut(s) 352, 509
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 2 cut(s) 487, 541
CviQI GTAC 2 cut(s) 487, 541
DdeI CTNAG 1 cut(s) 312
EaeI YGGCCR 2 cut(s) 93, 511
Eco32I GATATC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 430
EcoRV GATATC 1 cut(s) 147
FaiI YATR 4 cut(s) 377, 443, 499, 501
FalI AAGNNNNNCTT 2 cut(s) 18, 50
FaqI GGGAC 1 cut(s) 52
FauI CCCGC 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 481
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 1 cut(s) 158
GlaI GCGC 1 cut(s) 175
GluI GCNGC 1 cut(s) 51
HaeIII GGCC 3 cut(s) 95, 352, 513
HapII CCGG 5 cut(s) 65, 218, 266, 353, 510
HhaI GCGC 1 cut(s) 176
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 3 cut(s) 284, 316, 530
HpaII CCGG 5 cut(s) 65, 218, 266, 353, 510
HphI GGTGA 3 cut(s) 112, 446, 499
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 535
Hpy188III TCNNGA 3 cut(s) 65, 142, 266
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 553
HpyCH4III ACNGT 2 cut(s) 505, 545
HpyCH4V TGCA 6 cut(s) 4, 53, 89, 384, 424, 521
HpyF3I CTNAG 1 cut(s) 312
HspAI GCGC 1 cut(s) 174
Kpn2I TCCGGA 2 cut(s) 64, 265
KroI GCCGGC 1 cut(s) 352
KroNI GCCGGC 1 cut(s) 354
LmnI GCTCC 1 cut(s) 339
Lsp1109I GCAGC 1 cut(s) 37
MaeI CTAG 1 cut(s) 158
MaeIII GTNAC 2 cut(s) 202, 505
MboII GAAGA 3 cut(s) 33, 314, 539
MluCI AATT 5 cut(s) 69, 150, 237, 305, 552
MlyI GAGTC 1 cut(s) 310
MnlI CCTC 3 cut(s) 97, 461, 517
MroI TCCGGA 2 cut(s) 64, 265
MroNI GCCGGC 1 cut(s) 352
MseI TTAA 1 cut(s) 576
MspA1I CMGCKG 1 cut(s) 327
MspI CCGG 5 cut(s) 65, 218, 266, 353, 510
MspR9I CCNGG 2 cut(s) 218, 432
MvaI CCWGG 1 cut(s) 432
NaeI GCCGGC 1 cut(s) 354
NciI CCSGG 1 cut(s) 218
NgoMIV GCCGGC 1 cut(s) 352
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 505
PdiI GCCGGC 1 cut(s) 354
PfeI GAWTC 2 cut(s) 284, 530
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PshAI GACNNNNGTC 1 cut(s) 320
Psp6I CCWGG 1 cut(s) 430
PspGI CCWGG 1 cut(s) 430
PspPI GGNCC 1 cut(s) 263
PstNI CAGNNNCTG 1 cut(s) 206
RsaI GTAC 2 cut(s) 488, 542
RsaNI GTAC 2 cut(s) 487, 541
SaqAI TTAA 1 cut(s) 576
SatI GCNGC 1 cut(s) 51
Sau96I GGNCC 1 cut(s) 263
SchI GAGTC 1 cut(s) 310
ScrFI CCNGG 2 cut(s) 218, 432
SetI ASST 5 cut(s) 236, 300, 344, 453, 463
SinI GGWCC 1 cut(s) 263
Sse9I AATT 5 cut(s) 69, 150, 237, 305, 552
SsiI CCGC 2 cut(s) 224, 327
SspMI CTAG 1 cut(s) 158
StyD4I CCNGG 2 cut(s) 216, 430
TaaI ACNGT 2 cut(s) 505, 545
TasI AATT 5 cut(s) 69, 150, 237, 305, 552
TatI WGTACW 1 cut(s) 540
TfiI GAWTC 2 cut(s) 284, 530
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TscAI CASTG 1 cut(s) 426
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 1 cut(s) 458
TspRI CASTG 1 cut(s) 426
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 2 cut(s) 69, 305
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.