Rorug07G0289900

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000546
Physical Location & Seq
Reverse (-)
28232815 .. 28237823
5009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0289900.1

Sequence Viewer

Length: 1119 bp
ATGTCAGGATCTGAGACGGGAGTGATGACCAGTAGAGAGCCGTTTCTGCAGGCTAGTCCTCTACAGTCACTGACTCAGTCACAGTCACAGAGCATGCGCTTGGACTACACTTCCGGCACCAATGCCATCTACAAGCCCGTCACCGCCGCCACCTCACCGCCGCCTTACCAGTCCACTGCTGGAGCTGTTGCTGTTGCTGCTGCTGCTCCGGGGGACAGTTCAACTGGTGCTGGTGCTGTTATGTCATCTGGGCAGCTTAACATGAACATGGGTGGTGAGCCAATGAAGAGGAAGAGAGGGAGGCCGAGGAAGTATGGGCCAGATGGGACAATGGCATTGGCTCTGTCACCTTCAGCACAGTCTGCTGCTGTCCCTGTTACCCAGTCCAGTGGAGGCTTTTCTCCTCCTCCTCCGCCACCGCCTCCTGCTGCTGCTTCTGGAGGCGCTGCCTCACCCACTACTTCCACCAAGAAAGCCAGAGGCAGGCCACCTGGTTCTACGAATACAAAGAAGCAGCAATTGGAAGCTTTGGGATCTGCAGGCATGGGATTTACACCACATGTCATCACTGTTAAAGCTGGAGAGGATGTATCTTCAAAAATTATGTCGTTCTCTCAGAATGGTCCTAGGGCTGTTTGTATCCTGTCAGCAAATGGAGCGATATCAAATGTGACTCTTCGCCAAGCAGCCACATCTGGTGGAACTGTTACATATGAGGGGCGGTTTGAAATTCTATCACTTTCTGGCTCATTTCTTCTATCTGAAATTGATGGCCAGCGCAGCAGAACTGGAGGATTAAGTGTCTCACTGTCTAGCTCAGATGGTCGAGTTTTGGGTGGTTGTGTGGCAGGTCTCCTGACTGCTGCCTGTCCTGTTCAGGTAGTTGTTGGGAGCTTTGCTGCAGATGGTCGAAAAGAACCAAAGACGGAAATGAAAAAGGATCCTTCATCTGCAGGACCACGGCTTGCAGCAGCTAGTGGGCCAAACGGGGTCAGTAGTCCACTGTCACACGGAACTCTCAGTGAATCCTCAGGTGGGCAGGGAAGTCCACTTAACCAGAGTACAGGAGCCGGCAATAACAATAACCCACAAGGCATGTCAAGCATGTCCTGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

372

Amino Acids

37.19

Weight (kDa)

9.85

Isoelectric Point (pI)

59.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 185 - 300 1.4e-27 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000546)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica MD14G1049300.v1.1
rosa_chinensis RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata RLG00000001164 RLG00000013941
rosa_multiflora Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 839
AccB1I GGYRCC 1 cut(s) 116
AciI CCGC 7 cut(s) 144, 147, 158, 161, 413, 419, 721
AclWI GGATC 4 cut(s) 16, 541, 935, 948
AcoI YGGCCR 1 cut(s) 772
AcsI RAATTY 1 cut(s) 729
AcuI CTGAAG 1 cut(s) 336
AfaI GTAC 1 cut(s) 1063
AfiI CCNNNNNNNGG 2 cut(s) 483, 1035
AflIII ACRYGT 1 cut(s) 559
AgsI TTSAA 3 cut(s) 222, 597, 728
AjnI CCWGG 2 cut(s) 490, 1109
AjuI GAANNNNNNNTTGG 2 cut(s) 503, 535
AluBI AGCT 7 cut(s) 185, 256, 527, 578, 816, 894, 974
AluI AGCT 7 cut(s) 185, 256, 527, 578, 816, 894, 974
Alw26I GTCTC 3 cut(s) 8, 808, 857
AlwI GGATC 4 cut(s) 16, 541, 935, 948
AlwNI CAGNNNCTG 2 cut(s) 11, 70
AoxI GGCC 5 cut(s) 302, 317, 485, 772, 980
ApoI RAATTY 1 cut(s) 729
ArsI GACNNNNNNTTYG 2 cut(s) 590, 622
AspA2I CCTAGG 1 cut(s) 626
AspLEI GCGC 3 cut(s) 99, 446, 780
AspS9I GGNCC 4 cut(s) 317, 623, 956, 980
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 5 cut(s) 133, 147, 287, 339, 444
AvaII GGWCC 2 cut(s) 623, 956
AvrII CCTAGG 1 cut(s) 626
AxyI CCTNAGG 1 cut(s) 1030
BalI TGGCCA 1 cut(s) 774
BamHI GGATCC 1 cut(s) 940
BanI GGYRCC 1 cut(s) 116
BccI CCATC 5 cut(s) 134, 317, 764, 815, 899
BceAI ACGGC 2 cut(s) 25, 977
BciT130I CCWGG 2 cut(s) 492, 1111
BciVI GTATCC 1 cut(s) 650
BcnI CCSGG 1 cut(s) 210
BcoDI GTCTC 3 cut(s) 8, 808, 857
BfaI CTAG 4 cut(s) 54, 627, 813, 975
BfmI CTRYAG 5 cut(s) 47, 62, 537, 900, 951
BfoI RGCGCY 1 cut(s) 447
BfuAI ACCTGC 1 cut(s) 839
BfuI GTATCC 1 cut(s) 650
BlnI CCTAGG 1 cut(s) 626
Bme1390I CCNGG 3 cut(s) 210, 492, 1111
Bme18I GGWCC 2 cut(s) 623, 956
BmgT120I GGNCC 4 cut(s) 317, 623, 956, 980
BmiI GGNNCC 3 cut(s) 118, 942, 1069
BmrFI CCNGG 3 cut(s) 210, 492, 1111
BmrI ACTGGG 1 cut(s) 376
BmuI ACTGGG 1 cut(s) 376
BpmI CTGGAG 4 cut(s) 201, 459, 600, 810
BpuMI CCSGG 1 cut(s) 210
BsaI GGTCTC 1 cut(s) 857
BsaJI CCNNGG 4 cut(s) 209, 305, 626, 959
BsaXI ACNNNNNCTCC 2 cut(s) 573, 603
Bsc4I CCNNNNNNNGG 2 cut(s) 483, 1035
Bse118I RCCGGY 1 cut(s) 1070
Bse1I ACTGG 6 cut(s) 30, 169, 229, 382, 387, 793
Bse21I CCTNAGG 1 cut(s) 1030
BseBI CCWGG 2 cut(s) 492, 1111
BseDI CCNNGG 4 cut(s) 209, 305, 626, 959
BseGI GGATG 1 cut(s) 592
BseLI CCNNNNNNNGG 2 cut(s) 483, 1035
BseMII CTCAG 5 cut(s) 89, 629, 831, 1033, 1044
BseNI ACTGG 6 cut(s) 30, 169, 229, 382, 387, 793
BseRI GAGGAG 3 cut(s) 393, 396, 399
BshFI GGCC 5 cut(s) 304, 319, 487, 774, 982
BshNI GGYRCC 1 cut(s) 116
BsiSI CCGG 3 cut(s) 114, 209, 1071
BslFI GGGAC 3 cut(s) 227, 340, 356
BslI CCNNNNNNNGG 2 cut(s) 483, 1035
BsmAI GTCTC 3 cut(s) 8, 808, 857
BsmBI CGTCTC 1 cut(s) 8
BsmFI GGGAC 3 cut(s) 227, 340, 356
BsnI GGCC 5 cut(s) 304, 319, 487, 774, 982
Bso31I GGTCTC 1 cut(s) 857
Bsp143I GATC 3 cut(s) 8, 533, 940
BspACI CCGC 7 cut(s) 144, 147, 158, 161, 413, 419, 721
BspANI GGCC 5 cut(s) 304, 319, 487, 774, 982
BspCNI CTCAG 6 cut(s) 4, 88, 628, 830, 1032, 1043
BspLI GGNNCC 3 cut(s) 118, 942, 1069
BspMAI CTGCAG 4 cut(s) 51, 541, 904, 955
BspMI ACCTGC 1 cut(s) 839
BspPI GGATC 4 cut(s) 16, 541, 935, 948
BspT107I GGYRCC 1 cut(s) 116
BspTNI GGTCTC 1 cut(s) 857
BsrFI RCCGGY 1 cut(s) 1070
BsrI ACTGG 6 cut(s) 30, 169, 229, 382, 387, 793
BssAI RCCGGY 1 cut(s) 1070
BssECI CCNNGG 4 cut(s) 209, 305, 626, 959
BssMI GATC 3 cut(s) 8, 533, 940
BssT1I CCWWGG 1 cut(s) 626
Bst2UI CCWGG 2 cut(s) 492, 1111
Bst4CI ACNGT 8 cut(s) 66, 84, 218, 360, 571, 706, 810, 1005
Bst6I CTCTTC 3 cut(s) 281, 287, 681
BstAPI GCANNNNNTGC 1 cut(s) 362
BstC8I GCNNGC 7 cut(s) 51, 95, 485, 541, 776, 966, 1072
BstDEI CTNAG 6 cut(s) 12, 75, 615, 817, 1019, 1030
BstDSI CCRYGG 1 cut(s) 959
BstF5I GGATG 1 cut(s) 592
BstH2I RGCGCY 1 cut(s) 447
BstHHI GCGC 3 cut(s) 99, 446, 780
BstKTI GATC 3 cut(s) 11, 536, 943
BstMAI GTCTC 3 cut(s) 8, 808, 857
BstMBI GATC 3 cut(s) 8, 533, 940
BstMWI GCNNNNNNNGC 7 cut(s) 46, 197, 203, 362, 656, 780, 1101
BstNI CCWGG 2 cut(s) 492, 1111
BstNSI RCATGY 4 cut(s) 97, 563, 1099, 1108
BstSCI CCNGG 3 cut(s) 208, 490, 1109
BstSFI CTRYAG 5 cut(s) 47, 62, 537, 900, 951
BstX2I RGATCY 3 cut(s) 8, 533, 940
BstXI CCANNNNNNTGG 1 cut(s) 389
BstYI RGATCY 3 cut(s) 8, 533, 940
Bsu36I CCTNAGG 1 cut(s) 1030
BsuI GTATCC 1 cut(s) 650
BsuRI GGCC 5 cut(s) 304, 319, 487, 774, 982
BtgI CCRYGG 1 cut(s) 959
BtsCI GGATG 1 cut(s) 592
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 7 cut(s) 68, 174, 394, 567, 806, 1001, 1027
BveI ACCTGC 1 cut(s) 839
Cac8I GCNNGC 7 cut(s) 51, 95, 485, 541, 776, 966, 1072
CaiI CAGNNNCTG 2 cut(s) 11, 70
CfoI GCGC 3 cut(s) 99, 446, 780
Cfr10I RCCGGY 1 cut(s) 1070
Cfr13I GGNCC 4 cut(s) 317, 623, 956, 980
CsiI ACCWGGT 1 cut(s) 490
Csp6I GTAC 1 cut(s) 1062
CviAII CATG 7 cut(s) 94, 262, 268, 544, 560, 1096, 1105
CviQI GTAC 1 cut(s) 1062
DdeI CTNAG 6 cut(s) 12, 75, 615, 817, 1019, 1030
DpnI GATC 3 cut(s) 10, 535, 942
DpnII GATC 3 cut(s) 8, 533, 940
EaeI YGGCCR 1 cut(s) 772
Eam1104I CTCTTC 3 cut(s) 281, 287, 681
EarI CTCTTC 3 cut(s) 281, 287, 681
EciI GGCGGA 1 cut(s) 402
Eco130I CCWWGG 1 cut(s) 626
Eco31I GGTCTC 1 cut(s) 857
Eco32I GATATC 1 cut(s) 663
Eco47I GGWCC 2 cut(s) 623, 956
Eco57I CTGAAG 1 cut(s) 336
Eco81I CCTNAGG 1 cut(s) 1030
EcoRII CCWGG 2 cut(s) 490, 1109
EcoRV GATATC 1 cut(s) 663
EcoT14I CCWWGG 1 cut(s) 626
ErhI CCWWGG 1 cut(s) 626
Esp3I CGTCTC 1 cut(s) 8
FaeI CATG 7 cut(s) 97, 265, 271, 547, 563, 1099, 1108
FaqI GGGAC 3 cut(s) 227, 340, 356
FatI CATG 7 cut(s) 93, 261, 267, 543, 559, 1095, 1104
FauNDI CATATG 1 cut(s) 712
FokI GGATG 1 cut(s) 599
FspBI CTAG 4 cut(s) 54, 627, 813, 975
GlaI GCGC 3 cut(s) 98, 445, 779
GsuI CTGGAG 4 cut(s) 201, 459, 600, 810
HaeII RGCGCY 1 cut(s) 447
HaeIII GGCC 5 cut(s) 304, 319, 487, 774, 982
HapII CCGG 3 cut(s) 114, 209, 1071
HhaI GCGC 3 cut(s) 99, 446, 780
Hin1II CATG 7 cut(s) 97, 265, 271, 547, 563, 1099, 1108
Hin6I GCGC 3 cut(s) 97, 444, 778
HinP1I GCGC 3 cut(s) 97, 444, 778
HindIII AAGCTT 1 cut(s) 525
HinfI GANTC 3 cut(s) 73, 673, 1025
HpaII CCGG 3 cut(s) 114, 209, 1071
HphI GGTGA 5 cut(s) 133, 147, 287, 339, 444
Hpy166II GTNNAC 3 cut(s) 174, 1001, 1049
Hpy188I TCNGA 4 cut(s) 13, 618, 763, 820
Hpy188III TCNNGA 3 cut(s) 6, 438, 856
Hpy8I GTNNAC 3 cut(s) 174, 1001, 1049
HpyAV CCTTC 2 cut(s) 360, 954
HpyCH4III ACNGT 8 cut(s) 66, 84, 218, 360, 571, 706, 810, 1005
HpyCH4V TGCA 5 cut(s) 49, 539, 902, 953, 968
HpyF10VI GCNNNNNNNGC 7 cut(s) 46, 197, 203, 362, 656, 780, 1101
HpyF3I CTNAG 6 cut(s) 12, 75, 615, 817, 1019, 1030
Hsp92II CATG 7 cut(s) 97, 265, 271, 547, 563, 1099, 1108
HspAI GCGC 3 cut(s) 97, 444, 778
KroI GCCGGC 1 cut(s) 1070
KroNI GCCGGC 1 cut(s) 1072
Kzo9I GATC 3 cut(s) 8, 533, 940
LmnI GCTCC 5 cut(s) 182, 211, 656, 891, 1067
MabI ACCWGGT 1 cut(s) 490
MaeI CTAG 4 cut(s) 54, 627, 813, 975
MaeIII GTNAC 9 cut(s) 66, 78, 84, 139, 345, 376, 670, 706, 1005
MalI GATC 3 cut(s) 10, 535, 942
MboI GATC 3 cut(s) 8, 533, 940
MboII GAAGA 5 cut(s) 298, 304, 585, 668, 746
MfeI CAATTG 1 cut(s) 518
MflI RGATCY 3 cut(s) 8, 533, 940
MlsI TGGCCA 1 cut(s) 774
MluCI AATT 4 cut(s) 518, 600, 729, 765
MluNI TGGCCA 1 cut(s) 774
MlyI GAGTC 2 cut(s) 67, 667
Mox20I TGGCCA 1 cut(s) 774
MroNI GCCGGC 1 cut(s) 1070
MscI TGGCCA 1 cut(s) 774
MseI TTAA 4 cut(s) 258, 573, 797, 1053
MslI CAYNNNNRTG 1 cut(s) 266
Msp20I TGGCCA 1 cut(s) 774
MspI CCGG 3 cut(s) 114, 209, 1071
MspR9I CCNGG 3 cut(s) 210, 492, 1111
MunI CAATTG 1 cut(s) 518
MvaI CCWGG 2 cut(s) 492, 1111
MwoI GCNNNNNNNGC 7 cut(s) 46, 197, 203, 362, 656, 780, 1101
NaeI GCCGGC 1 cut(s) 1072
NciI CCSGG 1 cut(s) 210
NdeI CATATG 1 cut(s) 712
NdeII GATC 3 cut(s) 8, 533, 940
NgoMIV GCCGGC 1 cut(s) 1070
NlaIII CATG 7 cut(s) 97, 265, 271, 547, 563, 1099, 1108
NlaIV GGNNCC 3 cut(s) 118, 942, 1069
NmeAIII GCCGAG 1 cut(s) 330
NmuCI GTSAC 7 cut(s) 66, 78, 84, 139, 345, 670, 1005
NspI RCATGY 4 cut(s) 97, 563, 1099, 1108
PaeI GCATGC 1 cut(s) 97
PciI ACATGT 1 cut(s) 559
PdiI GCCGGC 1 cut(s) 1072
PfeI GAWTC 1 cut(s) 1025
PflFI GACNNNGTC 1 cut(s) 76
PfoI TCCNGGA 1 cut(s) 1109
PleI GAGTC 2 cut(s) 67, 667
PpsI GAGTC 2 cut(s) 67, 667
PscI ACATGT 1 cut(s) 559
Psp6I CCWGG 2 cut(s) 490, 1109
PspGI CCWGG 2 cut(s) 490, 1109
PspN4I GGNNCC 3 cut(s) 118, 942, 1069
PspPI GGNCC 4 cut(s) 317, 623, 956, 980
PstI CTGCAG 4 cut(s) 51, 541, 904, 955
PstNI CAGNNNCTG 2 cut(s) 11, 70
PsuI RGATCY 3 cut(s) 8, 533, 940
PsyI GACNNNGTC 1 cut(s) 76
RsaI GTAC 1 cut(s) 1063
RsaNI GTAC 1 cut(s) 1062
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 4 cut(s) 258, 573, 797, 1053
Sau3AI GATC 3 cut(s) 8, 533, 940
Sau96I GGNCC 4 cut(s) 317, 623, 956, 980
SchI GAGTC 2 cut(s) 67, 667
ScrFI CCNGG 3 cut(s) 210, 492, 1111
SexAI ACCWGGT 1 cut(s) 490
SfcI CTRYAG 5 cut(s) 47, 62, 537, 900, 951
SinI GGWCC 2 cut(s) 623, 956
SmiMI CAYNNNNRTG 1 cut(s) 266
SphI GCATGC 1 cut(s) 97
Sse9I AATT 4 cut(s) 518, 600, 729, 765
SsiI CCGC 7 cut(s) 144, 147, 158, 161, 413, 419, 721
SspMI CTAG 4 cut(s) 54, 627, 813, 975
StyD4I CCNGG 3 cut(s) 208, 490, 1109
StyI CCWWGG 1 cut(s) 626
TaaI ACNGT 8 cut(s) 66, 84, 218, 360, 571, 706, 810, 1005
TaqI TCGA 2 cut(s) 826, 910
TasI AATT 4 cut(s) 518, 600, 729, 765
TatI WGTACW 1 cut(s) 1061
TauI GCSGC 2 cut(s) 149, 163
TfiI GAWTC 1 cut(s) 1025
Tru1I TTAA 4 cut(s) 258, 573, 797, 1053
Tru9I TTAA 4 cut(s) 258, 573, 797, 1053
TscAI CASTG 7 cut(s) 75, 181, 394, 574, 813, 1008, 1027
TseFI GTSAC 7 cut(s) 66, 78, 84, 139, 345, 670, 1005
Tsp45I GTSAC 7 cut(s) 66, 78, 84, 139, 345, 670, 1005
TspDTI ATGAA 4 cut(s) 278, 299, 936, 947
TspGWI ACGGA 2 cut(s) 941, 1026
TspRI CASTG 7 cut(s) 75, 181, 394, 574, 813, 1008, 1027
Tth111I GACNNNGTC 1 cut(s) 76
VpaK11BI GGWCC 2 cut(s) 623, 956
XapI RAATTY 1 cut(s) 729
XceI RCATGY 4 cut(s) 97, 563, 1099, 1108
XcmI CCANNNNNNNNNTGG 1 cut(s) 176
XmaJI CCTAGG 1 cut(s) 626
XspI CTAG 4 cut(s) 54, 627, 813, 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.