Rmu_sc0011027.1_g000008

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011027.1
OG0000546
Physical Location & Seq
Reverse (-)
21318 .. 22201
884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011027.1_g000008.1.cds

Sequence Viewer

Length: 813 bp
atgcacaggctcaccactctacgacatcttgattttgatatcattggacaattggatttcatgcctgctcacttgaggaatttgactgaccttcagactttgagcgcacttcgcattttaaggcttgaaaatgtgttgagcaaggcagatgttgaggaagcggatttgccaagtaagaaacgcctgcagcggttggatctccaatggactagtctgttggttgagaacataaagttgcaagaggaaatcctcggctctcttcgaccccatgctggccatagagaattacagatattcttctataacggtacaaaacttgcagcttggttgagcagtccatcttttagtggccttgttgttatgaccctcttcaaatgtgaaaactgtgaccttctcccttctataggtcagttaccagagctcaagtttctttcgattgtacagatgaatgaggtgaaagaaatcgaccagacatttttcagaagtactgatgacctaattgattataaaccggtcaatgcatttccaaaacttgagatactagaggtcgacatcatgctgaacttgaaagagtggaagaacgtaaaagaaggtgatttgccatccctaattaaactctcagtggagtcttgcccagagcttgtcactctcccatcatattcccgccccaaatgcctgaagtatatggaggtaaggaactgtcaaaagcttatgtccttggaccgcaatggactaccaacttcactggagtctttaataatcagtgactgccctgaactgaaagaatggtctgacaaggagggagatcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 ko04016 ko04075 ko04931 map04014 map04016 map04075 map04931
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

270

Amino Acids

31.05

Weight (kDa)

5.37

Isoelectric Point (pI)

53.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000546)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica MD14G1049300.v1.1
rosa_chinensis RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata RLG00000001164 RLG00000013941
rosa_multiflora Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 507
AccI GTMKAC 1 cut(s) 549
AciI CCGC 4 cut(s) 161, 190, 664, 724
AclWI GGATC 1 cut(s) 204
AcoI YGGCCR 1 cut(s) 274
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 2 cut(s) 77, 698
AfaI GTAC 3 cut(s) 310, 441, 487
AfiI CCNNNNNNNGG 2 cut(s) 272, 404
AgeI ACCGGT 1 cut(s) 511
AgsI TTSAA 3 cut(s) 128, 373, 568
AhlI ACTAGT 1 cut(s) 209
AluBI AGCT 4 cut(s) 323, 421, 640, 709
AluI AGCT 4 cut(s) 323, 421, 640, 709
Alw21I GWGCWC 1 cut(s) 423
AlwI GGATC 1 cut(s) 204
AlwNI CAGNNNCTG 1 cut(s) 768
AoxI GGCC 2 cut(s) 274, 349
ApeKI GCWGC 2 cut(s) 187, 320
ApoI RAATTY 1 cut(s) 79
AsiGI ACCGGT 1 cut(s) 511
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 721
AsuHPI GGTGA 3 cut(s) 4, 466, 605
AvaII GGWCC 1 cut(s) 721
BalI TGGCCA 1 cut(s) 276
BanII GRGCYC 1 cut(s) 423
Bbv12I GWGCWC 1 cut(s) 423
BbvI GCAGC 2 cut(s) 199, 332
BccI CCATC 3 cut(s) 346, 610, 661
BcuI ACTAGT 1 cut(s) 209
BfaI CTAG 2 cut(s) 210, 542
BfmI CTRYAG 2 cut(s) 185, 402
BisI GCNGC 2 cut(s) 188, 321
BlsI GCNGC 2 cut(s) 189, 322
BmcAI AGTACT 1 cut(s) 487
Bme18I GGWCC 1 cut(s) 721
BmgT120I GGNCC 1 cut(s) 721
BpmI CTGGAG 1 cut(s) 767
BpuEI CTTGAG 3 cut(s) 94, 407, 554
BsaJI CCNNGG 2 cut(s) 250, 717
BsaWI WCCGGW 1 cut(s) 511
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 404
Bse118I RCCGGY 1 cut(s) 511
Bse1I ACTGG 1 cut(s) 750
Bse3DI GCAATG 1 cut(s) 733
BseDI CCNNGG 2 cut(s) 250, 717
BseGI GGATG 1 cut(s) 602
BseLI CCNNNNNNNGG 2 cut(s) 272, 404
BseMI GCAATG 1 cut(s) 733
BseMII CTCAG 1 cut(s) 633
BseNI ACTGG 1 cut(s) 750
BseXI GCAGC 2 cut(s) 199, 332
BshFI GGCC 2 cut(s) 276, 351
BshTI ACCGGT 1 cut(s) 511
BsiHKAI GWGCWC 1 cut(s) 423
BsiSI CCGG 1 cut(s) 512
BslI CCNNNNNNNGG 2 cut(s) 272, 404
BsnI GGCC 2 cut(s) 276, 351
Bsp1286I GDGCHC 1 cut(s) 423
Bsp1407I TGTACA 1 cut(s) 439
Bsp143I GATC 2 cut(s) 196, 805
BspACI CCGC 4 cut(s) 161, 190, 664, 724
BspANI GGCC 2 cut(s) 276, 351
BspCNI CTCAG 1 cut(s) 632
BspMAI CTGCAG 1 cut(s) 189
BspPI GGATC 1 cut(s) 204
BsrDI GCAATG 1 cut(s) 733
BsrFI RCCGGY 1 cut(s) 511
BsrGI TGTACA 1 cut(s) 439
BsrI ACTGG 1 cut(s) 750
BssAI RCCGGY 1 cut(s) 511
BssECI CCNNGG 2 cut(s) 250, 717
BssMI GATC 2 cut(s) 196, 805
BssT1I CCWWGG 1 cut(s) 717
Bst4CI ACNGT 3 cut(s) 308, 386, 701
Bst6I CTCTTC 2 cut(s) 264, 374
BstAUI TGTACA 1 cut(s) 439
BstC8I GCNNGC 3 cut(s) 66, 185, 274
BstDEI CTNAG 1 cut(s) 619
BstENI CCTNNNNNAGG 1 cut(s) 402
BstF5I GGATG 1 cut(s) 602
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 2 cut(s) 199, 808
BstMBI GATC 2 cut(s) 196, 805
BstMWI GCNNNNNNNGC 2 cut(s) 111, 672
BstSFI CTRYAG 2 cut(s) 185, 402
BstV1I GCAGC 2 cut(s) 199, 332
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 2 cut(s) 276, 351
BtsCI GGATG 1 cut(s) 602
BtsIMutI CAGTG 3 cut(s) 627, 743, 769
Cac8I GCNNGC 3 cut(s) 66, 185, 274
CaiI CAGNNNCTG 1 cut(s) 768
CfoI GCGC 1 cut(s) 107
Cfr10I RCCGGY 1 cut(s) 511
Cfr13I GGNCC 1 cut(s) 721
Csp6I GTAC 3 cut(s) 309, 440, 486
CspAI ACCGGT 1 cut(s) 511
CviAII CATG 3 cut(s) 61, 269, 556
CviJI RGCY 9 cut(s) 10, 124, 255, 276, 323, 351, 421, 640, 709
CviKI_1 RGCY 9 cut(s) 10, 124, 255, 276, 323, 351, 421, 640, 709
CviQI GTAC 3 cut(s) 309, 440, 486
DdeI CTNAG 1 cut(s) 619
DpnI GATC 2 cut(s) 198, 807
DpnII GATC 2 cut(s) 196, 805
EaeI YGGCCR 1 cut(s) 274
Eam1104I CTCTTC 2 cut(s) 264, 374
EarI CTCTTC 2 cut(s) 264, 374
Ecl136II GAGCTC 1 cut(s) 421
Eco130I CCWWGG 1 cut(s) 717
Eco24I GRGCYC 1 cut(s) 423
Eco32I GATATC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 721
Eco53kI GAGCTC 1 cut(s) 421
Eco57I CTGAAG 2 cut(s) 77, 698
EcoICRI GAGCTC 1 cut(s) 421
EcoNI CCTNNNNNAGG 1 cut(s) 402
EcoRV GATATC 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 717
EcoT22I ATGCAT 1 cut(s) 523
EcoT38I GRGCYC 1 cut(s) 423
ErhI CCWWGG 1 cut(s) 717
FaeI CATG 3 cut(s) 64, 272, 559
FatI CATG 3 cut(s) 60, 268, 555
FauI CCCGC 1 cut(s) 671
FblI GTMKAC 1 cut(s) 549
Fnu4HI GCNGC 2 cut(s) 188, 321
FokI GGATG 1 cut(s) 589
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 2 cut(s) 188, 321
FspBI CTAG 2 cut(s) 210, 542
GlaI GCGC 1 cut(s) 106
GluI GCNGC 2 cut(s) 188, 321
GsuI CTGGAG 1 cut(s) 767
HaeIII GGCC 2 cut(s) 276, 351
HapII CCGG 1 cut(s) 512
HhaI GCGC 1 cut(s) 107
Hin1II CATG 3 cut(s) 64, 272, 559
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HincII GTYRAC 1 cut(s) 550
HindII GTYRAC 1 cut(s) 550
HindIII AAGCTT 1 cut(s) 707
HinfI GANTC 2 cut(s) 626, 749
HpaII CCGG 1 cut(s) 512
HphI GGTGA 3 cut(s) 4, 466, 605
Hpy166II GTNNAC 1 cut(s) 550
Hpy188I TCNGA 3 cut(s) 96, 482, 793
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 1 cut(s) 550
HpyAV CCTTC 4 cut(s) 101, 401, 408, 584
HpyCH4III ACNGT 3 cut(s) 308, 386, 701
HpyCH4IV ACGT 1 cut(s) 582
HpyCH4V TGCA 5 cut(s) 4, 187, 238, 320, 521
HpyF10VI GCNNNNNNNGC 2 cut(s) 111, 672
HpyF3I CTNAG 1 cut(s) 619
HpySE526I ACGT 1 cut(s) 582
Hsp92II CATG 3 cut(s) 64, 272, 559
HspAI GCGC 1 cut(s) 105
Kzo9I GATC 2 cut(s) 196, 805
Lsp1109I GCAGC 2 cut(s) 199, 332
MaeI CTAG 2 cut(s) 210, 542
MaeII ACGT 1 cut(s) 582
MaeIII GTNAC 4 cut(s) 386, 411, 643, 764
MalI GATC 2 cut(s) 198, 807
MboI GATC 2 cut(s) 196, 805
MboII GAAGA 4 cut(s) 251, 289, 361, 589
MfeI CAATTG 1 cut(s) 50
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 1 cut(s) 423
MlsI TGGCCA 1 cut(s) 276
MluCI AATT 5 cut(s) 50, 79, 284, 498, 609
MluNI TGGCCA 1 cut(s) 276
MlyI GAGTC 2 cut(s) 635, 758
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 9 cut(s) 69, 148, 235, 260, 377, 445, 538, 682, 793
Mox20I TGGCCA 1 cut(s) 276
Mph1103I ATGCAT 1 cut(s) 523
MscI TGGCCA 1 cut(s) 276
MseI TTAA 3 cut(s) 119, 612, 755
Msp20I TGGCCA 1 cut(s) 276
MspA1I CMGCKG 1 cut(s) 190
MspI CCGG 1 cut(s) 512
MunI CAATTG 1 cut(s) 50
MwoI GCNNNNNNNGC 2 cut(s) 111, 672
NdeII GATC 2 cut(s) 196, 805
NlaIII CATG 3 cut(s) 64, 272, 559
NmeAIII GCCGAG 1 cut(s) 231
NmuCI GTSAC 3 cut(s) 386, 643, 764
NsiI ATGCAT 1 cut(s) 523
PinAI ACCGGT 1 cut(s) 511
PkrI GCNGC 2 cut(s) 189, 322
PleI GAGTC 2 cut(s) 634, 757
PpsI GAGTC 2 cut(s) 634, 757
PsiI TTATAA 1 cut(s) 507
Psp124BI GAGCTC 1 cut(s) 423
PspPI GGNCC 1 cut(s) 721
PstI CTGCAG 1 cut(s) 189
PstNI CAGNNNCTG 1 cut(s) 768
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 3 cut(s) 310, 441, 487
RsaNI GTAC 3 cut(s) 309, 440, 486
SacI GAGCTC 1 cut(s) 423
SalI GTCGAC 1 cut(s) 548
SaqAI TTAA 3 cut(s) 119, 612, 755
SatI GCNGC 2 cut(s) 188, 321
Sau3AI GATC 2 cut(s) 196, 805
Sau96I GGNCC 1 cut(s) 721
ScaI AGTACT 1 cut(s) 487
SchI GAGTC 2 cut(s) 635, 758
SduI GDGCHC 1 cut(s) 423
SfcI CTRYAG 2 cut(s) 185, 402
SinI GGWCC 1 cut(s) 721
SmlI CTYRAG 3 cut(s) 73, 422, 533
SmoI CTYRAG 3 cut(s) 73, 422, 533
SpeI ACTAGT 1 cut(s) 209
Sse9I AATT 5 cut(s) 50, 79, 284, 498, 609
SsiI CCGC 4 cut(s) 161, 190, 664, 724
SspMI CTAG 2 cut(s) 210, 542
SstI GAGCTC 1 cut(s) 423
StyI CCWWGG 1 cut(s) 717
TaaI ACNGT 3 cut(s) 308, 386, 701
TaiI ACGT 1 cut(s) 585
TaqI TCGA 4 cut(s) 262, 434, 465, 549
TasI AATT 5 cut(s) 50, 79, 284, 498, 609
TatI WGTACW 2 cut(s) 439, 485
Tru1I TTAA 3 cut(s) 119, 612, 755
Tru9I TTAA 3 cut(s) 119, 612, 755
TscAI CASTG 3 cut(s) 627, 750, 769
TseFI GTSAC 3 cut(s) 386, 643, 764
TseI GCWGC 2 cut(s) 187, 320
Tsp45I GTSAC 3 cut(s) 386, 643, 764
TspDTI ATGAA 2 cut(s) 49, 461
TspRI CASTG 3 cut(s) 627, 750, 769
VpaK11BI GGWCC 1 cut(s) 721
XagI CCTNNNNNAGG 1 cut(s) 402
XapI RAATTY 1 cut(s) 79
XmiI GTMKAC 1 cut(s) 549
XspI CTAG 2 cut(s) 210, 542
ZrmI AGTACT 1 cut(s) 487
Zsp2I ATGCAT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.