Rw0G008770

phosphatase 2c

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00332
Physical Location & Seq
Forward (+)
70549 .. 72336
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G008770.1

Sequence Viewer

Length: 1254 bp
ATGGTGGACAACGCACTTGCTGGAGCTTCATCACTTTTGTTGTCCGGTGACATTCCAAGCTATGAGCAAAAAATGGAAAGTCCACCAGAGGTTGTAGATTCTTTCACTGCTGGCACCACACAGAGAGTAAATGATGCAAATTTGGAGCAAAAGCTTAGACAGGTTGCAGATGAGCATGAGAGTTTGACTCAACATTTGAAAAAAGAGAGGCAGAGGGAGAGAATGGAAGATACTGCTGGCGAGCATTTCAATTCCTTGGAGAAGGAGGGCTTCTTTGTGATCTCAAGATGTGATTTCACAATGGATTTCGATTCAATGCTCTCAGCTCCCGCGGATAATCCCAGCAACTTGTACAAGAAGAAGCTATCAAATCTGAGGCATATTGACCTTGATATCATTCGGCAACTGGATACCATGCCTGGACACTTGGGGAACTTGACTAACCTTCAAACTTTGCCAGCATTTCTTGTTGGTAGAGATGATGGGTGCCGTGTTGGAGAGTTGAAAAATTTGAATGATCTTAAAGGGTCATTTAACATTTCAAGGCTTGAAAACGTGTTGAGTAAAGAAGCTGAGGAAGCTGCCTTGATTGACAAGAAATGTACCCACAGGTTGGAGCTTAGATGGAGTGATATGTTTGTTGAGTATGCTCAGCAAGAGAAAATACTAGAATGTCTTCAACCCCATTCTGGCCTTAAAGAGTTACAAATACAACAGTACAGCGGGTCCATACTTCCAACCTGGATTAGCATTCCCTCTTTCGCTGACCTTGTTGTCATTACTCTCTACAGGTGCAGAAATTGTGTACTTCTGCCATGTATGGGACAATTACCAGCACTAAAGTCTCTTTCTATTATAGAGGTTAATGAGGTGAAAGAAATTAATCATCAATTTTTGAGAAATGTCCCGGTTGATCATGCATTTCCAAAACTGGAGAGACTTGAAATTGACATCATGCTCACTTTGAAAGAGTGGAAGGATATACAAATGGGTGACTTACATTCCCTATTTAAACTCACCATGGACTCTTGCCCAGAACTTGTCACTATTCCACCAATTTCATGCCTCAAGTCCCTCAAGCAGTTGGAGTTCAGGCGCTGCCCAAAGCTTCTCTCCTTGCCCACTGATGGACTACCAACTTCACTTGAGTCATTCGTAATCGTGGATTGCCATAAATTGAAGGAATGGTGCCTCAATAGTGAACATCGGAGCATGTTCTGTCATGTGCCTAGCATATGGTTTGACAATGATGAG

Protein Analysis

418

Amino Acids

47.71

Weight (kDa)

5.34

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 121 - 319 4.4e-11 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 166 - 287 4.6e-34 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000546)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica MD14G1049300.v1.1
rosa_chinensis RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata RLG00000001164 RLG00000013941
rosa_multiflora Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 773
AccB1I GGYRCC 3 cut(s) 113, 486, 1188
AccB7I CCANNNNNTGG 1 cut(s) 613
AccII CGCG 1 cut(s) 332
AciI CCGC 3 cut(s) 330, 332, 723
AcsI RAATTY 2 cut(s) 139, 508
AfaI GTAC 4 cut(s) 353, 604, 719, 807
AfiI CCNNNNNNNGG 4 cut(s) 613, 689, 821, 1127
AflIII ACRYGT 1 cut(s) 555
AjnI CCWGG 2 cut(s) 418, 740
AluBI AGCT 9 cut(s) 26, 60, 154, 326, 364, 572, 581, 619, 1108
AluI AGCT 9 cut(s) 26, 60, 154, 326, 364, 572, 581, 619, 1108
Alw26I GTCTC 2 cut(s) 849, 931
AlwNI CAGNNNCTG 1 cut(s) 1098
AoxI GGCC 1 cut(s) 691
ApeKI GCWGC 2 cut(s) 581, 1098
ApoI RAATTY 2 cut(s) 139, 508
ArsI GACNNNNNNTTYG 2 cut(s) 178, 210
AseI ATTAAT 1 cut(s) 882
Asp700I GAANNNNTTC 1 cut(s) 675
AspLEI GCGC 1 cut(s) 1098
AspS9I GGNCC 1 cut(s) 726
AsuC2I CCSGG 1 cut(s) 908
AsuHPI GGTGA 4 cut(s) 59, 883, 1004, 1009
AvaII GGWCC 1 cut(s) 726
BanI GGYRCC 3 cut(s) 113, 486, 1188
BbsI GAAGAC 1 cut(s) 668
BbvCI CCTCAGC 1 cut(s) 573
BbvI GCAGC 2 cut(s) 568, 1085
BccI CCATC 3 cut(s) 476, 618, 1121
BceAI ACGGC 1 cut(s) 474
BciT130I CCWGG 2 cut(s) 420, 742
BciVI GTATCC 1 cut(s) 403
BclI TGATCA 1 cut(s) 913
BcnI CCSGG 1 cut(s) 908
BcoDI GTCTC 2 cut(s) 849, 931
BfaI CTAG 2 cut(s) 668, 1230
BfmI CTRYAG 1 cut(s) 787
BfoI RGCGCY 1 cut(s) 1099
BfuI GTATCC 1 cut(s) 403
BisI GCNGC 2 cut(s) 582, 1099
BlpI GCTNAGC 1 cut(s) 651
BlsI GCNGC 2 cut(s) 583, 1100
Bme1390I CCNGG 3 cut(s) 420, 742, 908
Bme18I GGWCC 1 cut(s) 726
BmgT120I GGNCC 1 cut(s) 726
BmiI GGNNCC 4 cut(s) 115, 488, 727, 1190
BmrFI CCNGG 3 cut(s) 420, 742, 908
BmsI GCATC 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 668
BplI GAGNNNNNCTC 2 cut(s) 172, 204
BpmI CTGGAG 2 cut(s) 42, 953
Bpu10I CCTNAGC 1 cut(s) 573
Bpu1102I GCTNAGC 1 cut(s) 651
BpuEI CTTGAG 4 cut(s) 268, 1052, 1061, 1166
BpuMI CCSGG 1 cut(s) 908
BsaJI CCNNGG 3 cut(s) 255, 330, 1020
BsaWI WCCGGW 1 cut(s) 44
Bsc4I CCNNNNNNNGG 4 cut(s) 613, 689, 821, 1127
Bse1I ACTGG 2 cut(s) 411, 936
BseBI CCWGG 2 cut(s) 420, 742
BseDI CCNNGG 3 cut(s) 255, 330, 1020
BseLI CCNNNNNNNGG 4 cut(s) 613, 689, 821, 1127
BseMII CTCAG 4 cut(s) 336, 365, 564, 665
BseNI ACTGG 2 cut(s) 411, 936
BseXI GCAGC 2 cut(s) 568, 1085
BseYI CCCAGC 1 cut(s) 341
BsgI GTGCAG 1 cut(s) 814
Bsh1236I CGCG 1 cut(s) 332
BshFI GGCC 1 cut(s) 693
BshNI GGYRCC 3 cut(s) 113, 486, 1188
BsiSI CCGG 2 cut(s) 45, 908
BslFI GGGAC 3 cut(s) 837, 890, 1057
BslI CCNNNNNNNGG 4 cut(s) 613, 689, 821, 1127
BsmAI GTCTC 2 cut(s) 849, 931
BsmFI GGGAC 3 cut(s) 837, 890, 1057
BsmI GAATGC 1 cut(s) 750
BsnI GGCC 1 cut(s) 693
Bsp1407I TGTACA 1 cut(s) 351
Bsp143I GATC 3 cut(s) 279, 517, 913
Bsp1720I GCTNAGC 1 cut(s) 651
Bsp19I CCATGG 1 cut(s) 1020
BspACI CCGC 3 cut(s) 330, 332, 723
BspANI GGCC 1 cut(s) 693
BspCNI CTCAG 4 cut(s) 335, 366, 565, 664
BspFNI CGCG 1 cut(s) 332
BspLI GGNNCC 4 cut(s) 115, 488, 727, 1190
BspT107I GGYRCC 3 cut(s) 113, 486, 1188
BsrGI TGTACA 1 cut(s) 351
BsrI ACTGG 2 cut(s) 411, 936
BssECI CCNNGG 3 cut(s) 255, 330, 1020
BssMI GATC 3 cut(s) 279, 517, 913
BssT1I CCWWGG 2 cut(s) 255, 1020
Bst2UI CCWGG 2 cut(s) 420, 742
Bst4CI ACNGT 1 cut(s) 717
BstAUI TGTACA 1 cut(s) 351
BstC8I GCNNGC 4 cut(s) 112, 238, 242, 459
BstDEI CTNAG 6 cut(s) 155, 322, 374, 573, 620, 651
BstDSI CCRYGG 2 cut(s) 330, 1020
BstFNI CGCG 1 cut(s) 332
BstH2I RGCGCY 1 cut(s) 1099
BstHHI GCGC 1 cut(s) 1098
BstKTI GATC 3 cut(s) 282, 520, 916
BstMAI GTCTC 2 cut(s) 849, 931
BstMBI GATC 3 cut(s) 279, 517, 913
BstMWI GCNNNNNNNGC 1 cut(s) 578
BstNI CCWGG 2 cut(s) 420, 742
BstNSI RCATGY 1 cut(s) 1216
BstSCI CCNGG 3 cut(s) 418, 740, 906
BstSFI CTRYAG 1 cut(s) 787
BstUI CGCG 1 cut(s) 332
BstV1I GCAGC 2 cut(s) 568, 1085
BstV2I GAAGAC 1 cut(s) 668
BsuI GTATCC 1 cut(s) 403
BsuRI GGCC 1 cut(s) 693
BtgI CCRYGG 2 cut(s) 330, 1020
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 2 cut(s) 105, 1122
Cac8I GCNNGC 4 cut(s) 112, 238, 242, 459
CaiI CAGNNNCTG 1 cut(s) 1098
CfoI GCGC 1 cut(s) 1098
Cfr13I GGNCC 1 cut(s) 726
Cfr42I CCGCGG 1 cut(s) 333
Csp6I GTAC 4 cut(s) 352, 603, 718, 806
CviAII CATG 9 cut(s) 176, 415, 816, 917, 955, 1021, 1062, 1213, 1223
CviQI GTAC 4 cut(s) 352, 603, 718, 806
DdeI CTNAG 6 cut(s) 155, 322, 374, 573, 620, 651
DpnI GATC 3 cut(s) 281, 519, 915
DpnII GATC 3 cut(s) 279, 517, 913
DraI TTTAAA 1 cut(s) 1012
DrdI GACNNNNNNGTC 1 cut(s) 773
DseDI GACNNNNNNGTC 1 cut(s) 773
Eco130I CCWWGG 2 cut(s) 255, 1020
Eco32I GATATC 1 cut(s) 394
Eco47I GGWCC 1 cut(s) 726
EcoRII CCWGG 2 cut(s) 418, 740
EcoRV GATATC 1 cut(s) 394
EcoT14I CCWWGG 2 cut(s) 255, 1020
EcoT22I ATGCAT 1 cut(s) 922
ErhI CCWWGG 2 cut(s) 255, 1020
FaeI CATG 9 cut(s) 179, 418, 819, 920, 958, 1024, 1065, 1216, 1226
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FaqI GGGAC 3 cut(s) 837, 890, 1057
FatI CATG 9 cut(s) 175, 414, 815, 916, 954, 1020, 1061, 1212, 1222
FauI CCCGC 2 cut(s) 337, 716
FauNDI CATATG 1 cut(s) 1235
FbaI TGATCA 1 cut(s) 913
Fnu4HI GCNGC 2 cut(s) 582, 1099
Fsp4HI GCNGC 2 cut(s) 582, 1099
FspBI CTAG 2 cut(s) 668, 1230
GlaI GCGC 1 cut(s) 1097
GluI GCNGC 2 cut(s) 582, 1099
GsaI CCCAGC 1 cut(s) 345
GsuI CTGGAG 2 cut(s) 42, 953
HaeII RGCGCY 1 cut(s) 1099
HaeIII GGCC 1 cut(s) 693
HapII CCGG 2 cut(s) 45, 908
HhaI GCGC 1 cut(s) 1098
Hin1II CATG 9 cut(s) 179, 418, 819, 920, 958, 1024, 1065, 1216, 1226
Hin6I GCGC 1 cut(s) 1096
HinP1I GCGC 1 cut(s) 1096
HindIII AAGCTT 2 cut(s) 152, 1106
HinfI GANTC 5 cut(s) 98, 187, 311, 1025, 1148
HpaII CCGG 2 cut(s) 45, 908
HphI GGTGA 4 cut(s) 59, 883, 1004, 1009
Hpy166II GTNNAC 4 cut(s) 7, 83, 806, 1202
Hpy188I TCNGA 2 cut(s) 375, 1209
Hpy188III TCNNGA 1 cut(s) 285
Hpy8I GTNNAC 4 cut(s) 7, 83, 806, 1202
HpyAV CCTTC 4 cut(s) 256, 455, 970, 1174
HpyCH4III ACNGT 1 cut(s) 717
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 4 cut(s) 137, 167, 795, 920
HpyF10VI GCNNNNNNNGC 1 cut(s) 578
HpyF3I CTNAG 6 cut(s) 155, 322, 374, 573, 620, 651
HpySE526I ACGT 1 cut(s) 555
Hsp92II CATG 9 cut(s) 179, 418, 819, 920, 958, 1024, 1065, 1216, 1226
HspAI GCGC 1 cut(s) 1096
Ksp22I TGATCA 1 cut(s) 913
KspI CCGCGG 1 cut(s) 333
Kzo9I GATC 3 cut(s) 279, 517, 913
LmnI GCTCC 5 cut(s) 23, 145, 331, 616, 1209
Lsp1109I GCAGC 2 cut(s) 568, 1085
LweI GCATC 1 cut(s) 124
MaeI CTAG 2 cut(s) 668, 1230
MaeII ACGT 1 cut(s) 555
MaeIII GTNAC 4 cut(s) 47, 702, 992, 1042
MalI GATC 3 cut(s) 281, 519, 915
MboI GATC 3 cut(s) 279, 517, 913
MboII GAAGA 3 cut(s) 239, 370, 668
MlyI GAGTC 3 cut(s) 181, 1019, 1157
MmeI TCCRAC 4 cut(s) 475, 594, 761, 1065
Mph1103I ATGCAT 1 cut(s) 922
MroXI GAANNNNTTC 1 cut(s) 675
MseI TTAA 6 cut(s) 522, 534, 696, 864, 882, 1011
MspA1I CMGCKG 2 cut(s) 332, 723
MspI CCGG 2 cut(s) 45, 908
MspR9I CCNGG 3 cut(s) 420, 742, 908
Mva1269I GAATGC 1 cut(s) 750
MvaI CCWGG 2 cut(s) 420, 742
MvnI CGCG 1 cut(s) 332
MwoI GCNNNNNNNGC 1 cut(s) 578
NciI CCSGG 1 cut(s) 908
NcoI CCATGG 1 cut(s) 1020
NdeI CATATG 1 cut(s) 1235
NdeII GATC 3 cut(s) 279, 517, 913
NlaIII CATG 9 cut(s) 179, 418, 819, 920, 958, 1024, 1065, 1216, 1226
NlaIV GGNNCC 4 cut(s) 115, 488, 727, 1190
NmuCI GTSAC 3 cut(s) 47, 992, 1042
NsiI ATGCAT 1 cut(s) 922
NspI RCATGY 1 cut(s) 1216
PctI GAATGC 1 cut(s) 750
PdmI GAANNNNTTC 1 cut(s) 675
PfeI GAWTC 2 cut(s) 98, 311
PflMI CCANNNNNTGG 1 cut(s) 613
PkrI GCNGC 2 cut(s) 583, 1100
PleI GAGTC 3 cut(s) 181, 1019, 1156
PpsI GAGTC 3 cut(s) 181, 1019, 1156
PshBI ATTAAT 1 cut(s) 882
Psp6I CCWGG 2 cut(s) 418, 740
PspFI CCCAGC 1 cut(s) 341
PspGI CCWGG 2 cut(s) 418, 740
PspN4I GGNNCC 4 cut(s) 115, 488, 727, 1190
PspPI GGNCC 1 cut(s) 726
PstNI CAGNNNCTG 1 cut(s) 1098
RsaI GTAC 4 cut(s) 353, 604, 719, 807
RsaNI GTAC 4 cut(s) 352, 603, 718, 806
SacII CCGCGG 1 cut(s) 333
SaqAI TTAA 6 cut(s) 522, 534, 696, 864, 882, 1011
SatI GCNGC 2 cut(s) 582, 1099
Sau3AI GATC 3 cut(s) 279, 517, 913
Sau96I GGNCC 1 cut(s) 726
SchI GAGTC 3 cut(s) 181, 1019, 1157
ScrFI CCNGG 3 cut(s) 420, 742, 908
SfaNI GCATC 1 cut(s) 124
SfcI CTRYAG 1 cut(s) 787
Sfr303I CCGCGG 1 cut(s) 333
SgrBI CCGCGG 1 cut(s) 333
SinI GGWCC 1 cut(s) 726
SmlI CTYRAG 4 cut(s) 283, 1067, 1076, 1145
SmoI CTYRAG 4 cut(s) 283, 1067, 1076, 1145
SsiI CCGC 3 cut(s) 330, 332, 723
SspMI CTAG 2 cut(s) 668, 1230
StyD4I CCNGG 3 cut(s) 418, 740, 906
StyI CCWWGG 2 cut(s) 255, 1020
TaaI ACNGT 1 cut(s) 717
TaiI ACGT 1 cut(s) 558
TaqI TCGA 1 cut(s) 309
TatI WGTACW 3 cut(s) 351, 717, 805
TfiI GAWTC 2 cut(s) 98, 311
Tru1I TTAA 6 cut(s) 522, 534, 696, 864, 882, 1011
Tru9I TTAA 6 cut(s) 522, 534, 696, 864, 882, 1011
TscAI CASTG 2 cut(s) 112, 1129
TseFI GTSAC 3 cut(s) 47, 992, 1042
TseI GCWGC 2 cut(s) 581, 1098
Tsp45I GTSAC 3 cut(s) 47, 992, 1042
TspDTI ATGAA 2 cut(s) 18, 1050
TspRI CASTG 2 cut(s) 112, 1129
Van91I CCANNNNNTGG 1 cut(s) 613
VpaK11BI GGWCC 1 cut(s) 726
VspI ATTAAT 1 cut(s) 882
XapI RAATTY 2 cut(s) 139, 508
XceI RCATGY 1 cut(s) 1216
XmnI GAANNNNTTC 1 cut(s) 675
XspI CTAG 2 cut(s) 668, 1230
Zsp2I ATGCAT 1 cut(s) 922
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.