Rh4AG320500

phosphatase 2c

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
63312663 .. 63318040
5378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG320500.1

Sequence Viewer

Length: 2679 bp
ATGGAAAGTCCGCCTGAGGTTGGAGATTCTTTCTCTGCTGGCACCAGAGAGAGAGTAAAGGATGCAAATTTGGCGCAAAACCTTAGGCAGGTTGCAGATGAGCGTGGGATTTTGCCTCACCATTTGAAAAGGTTATTTCTGTATTGTTCACTCTTTCCCTTTGGTTATGAATTTAGTAAAGATGAGTTGGTCCAACTATGGATAGCTGAAGGCTTTATTAGAGAGAGGCAGAGGGAGAGAATGGAAGATACTGCTAGTGAGCATTTCAATTCCTTGGAGAAGGAAGGCTTCTTTGTGTTTTCGAGATGTGATTTCACTATGGATTTTGATTCGGTGCTCTCGGATCCGACGGATAATCCCAGCAACTTCTTGTACAAAGTAAATCCTAGCAAGCATTCATTATTGGAAGACACCATTTCTTCAGGTAATTATTTCAAAGCCGTGGATGGTAAGTTAGATGGAGCCTCTGAAATGACGAGACATTTGTCTTTGATTGGTGAGGATATTGATGGGATGGCTTTTGGGATCCTTCAAAACTTTAAGCATTTGCGCACACTGCATATGCTCTCTTGTCGTGGATCTTCTATGAAACACGTCCCTCGTGATTTGTGTTTCACCTTAACGTTCTTGAAAACCTTAAATTTGAGTGGGACATTGATTTCTGAGCTGCCGAGTTCCATTGGAAATGTAAAATCATTACGTTATGTTGATGCCTCACATACACCTATTTCACGGTTACCCGAATCAATAGATTCTCTTCACAATTTACAAACCATTAAGCTCAGAGGCTGCTTTCACTTTGTTCAGTTGCCAAAAGGAATGAAGAAGCTAAAAAAGCTACGGCATATTGATCTTGACATCATTCGGCAATTGGATTCCATGCCTGCACACTTGGGGAACTTGAGTAATCTTCAAACTTTGCCAGCATTTCTTGTTGGTAGAGATGATGGGTGCTGTGTTGTTGAGTTGAAAAATTTGAATGATCTTAAAGGGTCATTTAACATTTCAAGGCTTGAAAACGTGTTGAGTGAAGAAGAAGCTGAGGAAGCTGCCTTGATTGAAAAGAAATGTATCCACAGGTTGGAGCTTCGATGGAGTGAGATGTTTGTTGAGCATGCTCAGCAAGAGAAAATACTAGAATGTCTTCAACCCCATTCTGGCCTTAAAGAGTTACAAATACGACAGTACAGCGGGTCCGTACTTCCAACCTGGATTGGCAATCCCTCTTTTGCTGACCTTGTTGTCATCACTCTCTACAGATGCAGAAATTGTGAACTTCTGCCATGTATGGGACAATTACCAGCACTAAAGTCTCTTTCTATTATAGAGGTTAATGAGGTGAAAGAAATTAATCATCAATTTTTGAGAAATGTCCCGGTTGATCATGCATTTCCAAAACTGGAGAGACTTGAAATTGACATCATGCTCACTTTGAAAGAGTGGAAGGATATACAAATGGGTGACTTACCTTCCCTAGTTAAACTCACCATGGACTCTTGCCCAGAACTGGTCACACTTCCTGCACTCTTGTGCCTCAAATCCCTCAAGCACTTGGAGCTCAGGTGCTGCCCAAAGCTTATGGCCTTACCCACTGGTGGACTACCAACTTCACTTGAGTTTTTCTTGCTATTGGATTGCCTTAAACTGAAAGAATGGTGCTTGAAGAGTGAACATTGGAGCATGTTATGTCATGTGCCCAGCATATGGTTTGATCATGAAGAGATAAAGCTGCTTTGCGGGTCAAAACCCCTTTATAGCGCACTTCCTGCAATTGAAATTCGAGAGTGGTTCAGCACTAAATCTACCAGCACTCCCATATCAATCCCAACAGGGGATAACAAGTGGAAGGGAGTTGCCACGTGTGCTGTGACATCCAACGATCAGGATCAGTCCTCGGCCAAGCAGAACAGTCAGCTGAGCTTCGATCAGGTGGTGCATCACCAGCAGCGATCTAATGGCGGGGATCACCACGACGTGGAGGACAGCTTCAATCAGGACATGAGGGAGCTGACGGAGCTCCTCTCTAAGCTCGACCCCATGGCGGAGGAGTTTGTGCCTCCCTCACATGCTAACAACAAATATGGAATCAATGGTGGGTTTGTTGACTCCACCGCACTGATGATGCAGAGTGGAAACAGAATCGGACAAATTAACGATGCTGGTTTTCCCGGCATACAGAGAAATAATCAAGGAAAGAGGAGAATGAACAGCAAGACCAGTCAAGCGCAGCGAGAAGATAGAATTCGGAGGACTGTATATGTGTCTGACATTGATCAACAGGTCACTGAGGAACAGCTCACAGCGCTATTTGTTACTCGTGGGCAGGTTGTTGACTGCCGAATTTGTGGTGACCCGAATTCTGTACTCCGTTATGCCTTTATCGAGTTCACTGATGAAGAAGGTGCAAGGGCTGCTTTGAGTCTTGCTGGGACAATGCTTGGGTTCTACCCTGTGAGGGTGTTGCCTTCTAAGACAGCTATTGCACCTGTTAACCCAACATTCTTGCCTCAGACTGAAGATGAACGTGAGATTTGTGCAAGAACGATATACCGTACAAATATTGACAAGAAAGTTTCTCAAGCTGATTTTAAGCTCTTTTTTGAATCACTTTGTGGAGAGGTTTGTCGTCTGAGGCTGCTGGGAGACTATCACCACTCCACTCAGTATTGCATTTGTTGA

Protein Analysis

892

Amino Acids

101.09

Weight (kDa)

5.97

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 51 - 99 1e-14 Disease resistance protein Winged helix domain
LRR_14 PF23598 175 - 232 8.2e-06 Leucine-rich repeat region
LRR_14 PF23598 227 - 499 9.3e-26 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 321 - 443 4.4e-37 R13L1/DRL21 LRRs
RRM_1 PF00076 752 - 814 2.6e-10 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000546)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica MD14G1049300.v1.1
rosa_chinensis RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata RLG00000001164 RLG00000013941
rosa_multiflora Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1241
Acc16I TGCGCA 1 cut(s) 551
Acc36I ACCTGC 2 cut(s) 79, 2314
AccB1I GGYRCC 1 cut(s) 41
AccB7I CCANNNNNTGG 3 cut(s) 1081, 1704, 1975
AciI CCGC 6 cut(s) 11, 1191, 1737, 1959, 2042, 2112
AclI AACGTT 1 cut(s) 623
AclWI GGATC 7 cut(s) 338, 351, 520, 533, 586, 1893, 1971
AcoI YGGCCR 1 cut(s) 1896
AcsI RAATTY 8 cut(s) 67, 170, 640, 973, 1776, 2241, 2340, 2356
AcuI CTGAAG 3 cut(s) 228, 405, 2535
AcvI CACGTG 1 cut(s) 1860
AdeI CACNNNGTG 2 cut(s) 1975, 2612
AfaI GTAC 5 cut(s) 374, 1187, 1200, 2364, 2554
AfeI AGCGCT 1 cut(s) 2304
AflIII ACRYGT 3 cut(s) 592, 1020, 1859
AjiI CACGTC 2 cut(s) 595, 1975
AjnI CCWGG 1 cut(s) 1208
AleI CACNNNNGTG 1 cut(s) 1528
Alw21I GWGCWC 3 cut(s) 339, 1560, 2019
Alw26I GTCTC 4 cut(s) 472, 1317, 1399, 2637
AlwI GGATC 7 cut(s) 338, 351, 520, 533, 586, 1893, 1971
AlwNI CAGNNNCTG 2 cut(s) 789, 1566
Aor51HI AGCGCT 1 cut(s) 2304
AoxI GGCC 3 cut(s) 1159, 1581, 1896
ApeKI GCWGC 9 cut(s) 667, 789, 1049, 1566, 1729, 1945, 2227, 2411, 2635
ApoI RAATTY 8 cut(s) 67, 170, 640, 973, 1776, 2241, 2340, 2356
ArsI GACNNNNNNTTYG 2 cut(s) 466, 498
AseI ATTAAT 1 cut(s) 1350
Asp700I GAANNNNTTC 1 cut(s) 1143
AspLEI GCGC 5 cut(s) 76, 552, 1760, 2227, 2305
AspS9I GGNCC 2 cut(s) 190, 1194
AsuC2I CCSGG 2 cut(s) 1376, 2169
AvaII GGWCC 2 cut(s) 190, 1194
AxyI CCTNAGG 2 cut(s) 15, 83
BaeGI GKGCMC 1 cut(s) 1698
BamHI GGATCC 2 cut(s) 343, 525
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 2 cut(s) 1560, 2019
BauI CACGAG 2 cut(s) 600, 2316
BbrPI CACGTG 1 cut(s) 1860
BbsI GAAGAC 2 cut(s) 414, 1136
Bbv12I GWGCWC 3 cut(s) 339, 1560, 2019
BbvCI CCTCAGC 1 cut(s) 1041
BbvI GCAGC 9 cut(s) 654, 776, 1036, 1553, 1716, 1957, 2239, 2398, 2622
BccI CCATC 6 cut(s) 440, 452, 503, 508, 941, 1086
BceAI ACGGC 2 cut(s) 425, 857
BciT130I CCWGG 1 cut(s) 1210
BciVI GTATCC 1 cut(s) 1082
BclI TGATCA 3 cut(s) 1381, 1711, 2272
BcnI CCSGG 2 cut(s) 1376, 2169
BcoDI GTCTC 4 cut(s) 472, 1317, 1399, 2637
BfaI CTAG 4 cut(s) 255, 387, 1136, 1475
BfmI CTRYAG 1 cut(s) 1255
BfoI RGCGCY 1 cut(s) 2306
BfuAI ACCTGC 2 cut(s) 79, 2314
BfuI GTATCC 1 cut(s) 1082
BisI GCNGC 9 cut(s) 668, 790, 1050, 1567, 1730, 1946, 2228, 2412, 2636
BlpI GCTNAGC 2 cut(s) 1119, 1916
BlsI GCNGC 9 cut(s) 669, 791, 1051, 1568, 1731, 1947, 2229, 2413, 2637
Bme1390I CCNGG 3 cut(s) 1210, 1376, 2169
Bme18I GGWCC 2 cut(s) 190, 1194
BmgBI CACGTC 2 cut(s) 595, 1975
BmgT120I GGNCC 2 cut(s) 190, 1194
BmiI GGNNCC 5 cut(s) 43, 345, 463, 527, 1195
BmrFI CCNGG 3 cut(s) 1210, 1376, 2169
BmsI GCATC 6 cut(s) 52, 700, 1250, 1945, 2112, 2146
BoxI GACNNNNGTC 1 cut(s) 484
BpiI GAAGAC 2 cut(s) 414, 1136
BplI GAGNNNNNCTC 2 cut(s) 2006, 2038
BpmI CTGGAG 1 cut(s) 1421
Bpu10I CCTNAGC 2 cut(s) 1041, 1559
Bpu1102I GCTNAGC 2 cut(s) 1119, 1916
BpuEI CTTGAG 4 cut(s) 922, 1529, 1634, 2562
BpuMI CCSGG 2 cut(s) 1376, 2169
BsaAI YACGTR 1 cut(s) 1860
BsaBI GATNNNNATC 1 cut(s) 1884
BsaJI CCNNGG 5 cut(s) 273, 441, 1488, 1893, 2037
BsaXI ACNNNNNCTCC 4 cut(s) 1547, 1577, 1795, 1825
Bse1I ACTGG 4 cut(s) 1404, 1512, 1597, 2217
Bse21I CCTNAGG 2 cut(s) 15, 83
Bse8I GATNNNNATC 1 cut(s) 1884
BseBI CCWGG 1 cut(s) 1210
BseDI CCNNGG 5 cut(s) 273, 441, 1488, 1893, 2037
BseGI GGATG 4 cut(s) 67, 451, 519, 1871
BseJI GATNNNNATC 1 cut(s) 1884
BseNI ACTGG 4 cut(s) 1404, 1512, 1597, 2217
BseRI GAGGAG 3 cut(s) 2009, 2060, 2212
BseSI GKGCMC 1 cut(s) 1698
BseXI GCAGC 9 cut(s) 654, 776, 1036, 1553, 1716, 1957, 2239, 2398, 2622
BseYI CCCAGC 4 cut(s) 359, 1697, 2426, 2638
BsgI GTGCAG 2 cut(s) 870, 1506
BshFI GGCC 3 cut(s) 1161, 1583, 1898
BshNI GGYRCC 1 cut(s) 41
BsiHKAI GWGCWC 3 cut(s) 339, 1560, 2019
BsiSI CCGG 2 cut(s) 1376, 2169
BslFI GGGAC 5 cut(s) 581, 664, 1305, 1358, 2443
BsmAI GTCTC 4 cut(s) 472, 1317, 1399, 2637
BsmFI GGGAC 5 cut(s) 581, 664, 1305, 1358, 2443
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 3 cut(s) 1161, 1583, 1898
Bsp1286I GDGCHC 4 cut(s) 339, 1560, 1698, 2019
Bsp1407I TGTACA 1 cut(s) 372
Bsp1720I GCTNAGC 2 cut(s) 1119, 1916
Bsp19I CCATGG 2 cut(s) 1488, 2037
BspACI CCGC 6 cut(s) 11, 1191, 1737, 1959, 2042, 2112
BspANI GGCC 3 cut(s) 1161, 1583, 1898
BspHI TCATGA 1 cut(s) 1714
BspLI GGNNCC 5 cut(s) 43, 345, 463, 527, 1195
BspMI ACCTGC 2 cut(s) 79, 2314
BspPI GGATC 7 cut(s) 338, 351, 520, 533, 586, 1893, 1971
BspT107I GGYRCC 1 cut(s) 41
BsrGI TGTACA 1 cut(s) 372
BsrI ACTGG 4 cut(s) 1404, 1512, 1597, 2217
BssECI CCNNGG 5 cut(s) 273, 441, 1488, 1893, 2037
BssSI CACGAG 2 cut(s) 600, 2316
BssT1I CCWWGG 3 cut(s) 273, 1488, 2037
Bst2BI CACGAG 2 cut(s) 600, 2316
Bst2UI CCWGG 1 cut(s) 1210
Bst4CI ACNGT 5 cut(s) 735, 1185, 1910, 2254, 2552
Bst6I CTCTTC 3 cut(s) 762, 1658, 1713
BstAPI GCANNNNNTGC 2 cut(s) 1766, 2411
BstAUI TGTACA 1 cut(s) 372
BstBAI YACGTR 1 cut(s) 1860
BstC8I GCNNGC 5 cut(s) 40, 392, 885, 924, 1116
BstDSI CCRYGG 3 cut(s) 441, 1488, 2037
BstEII GGTNACC 2 cut(s) 735, 2348
BstENI CCTNNNNNAGG 1 cut(s) 86
BstF5I GGATG 4 cut(s) 67, 451, 519, 1871
BstH2I RGCGCY 1 cut(s) 2306
BstHHI GCGC 5 cut(s) 76, 552, 1760, 2227, 2305
BstMAI GTCTC 4 cut(s) 472, 1317, 1399, 2637
BstNI CCWGG 1 cut(s) 1210
BstNSI RCATGY 3 cut(s) 1118, 1684, 2069
BstPAI GACNNNNGTC 1 cut(s) 484
BstPI GGTNACC 2 cut(s) 735, 2348
BstSCI CCNGG 3 cut(s) 1208, 1374, 2167
BstSFI CTRYAG 1 cut(s) 1255
BstSLI GKGCMC 1 cut(s) 1698
BstV1I GCAGC 9 cut(s) 654, 776, 1036, 1553, 1716, 1957, 2239, 2398, 2622
BstV2I GAAGAC 2 cut(s) 414, 1136
BstX2I RGATCY 3 cut(s) 343, 525, 578
BstYI RGATCY 3 cut(s) 343, 525, 578
Bsu36I CCTNAGG 2 cut(s) 15, 83
BsuI GTATCC 1 cut(s) 1082
BsuRI GGCC 3 cut(s) 1161, 1583, 1898
BtgI CCRYGG 3 cut(s) 441, 1488, 2037
BtrI CACGTC 2 cut(s) 595, 1975
BtsCI GGATG 4 cut(s) 67, 451, 519, 1871
BtsI GCAGTG 1 cut(s) 554
BtsIMutI CAGTG 5 cut(s) 554, 1590, 2114, 2283, 2388
BveI ACCTGC 2 cut(s) 79, 2314
Cac8I GCNNGC 5 cut(s) 40, 392, 885, 924, 1116
CaiI CAGNNNCTG 2 cut(s) 789, 1566
CciI TCATGA 1 cut(s) 1714
CfoI GCGC 5 cut(s) 76, 552, 1760, 2227, 2305
Cfr13I GGNCC 2 cut(s) 190, 1194
Csp6I GTAC 5 cut(s) 373, 1186, 1199, 2363, 2553
CviQI GTAC 5 cut(s) 373, 1186, 1199, 2363, 2553
DraIII CACNNNGTG 2 cut(s) 1975, 2612
DrdI GACNNNNNNGTC 1 cut(s) 1241
DseDI GACNNNNNNGTC 1 cut(s) 1241
EaeI YGGCCR 1 cut(s) 1896
Eam1104I CTCTTC 3 cut(s) 762, 1658, 1713
EarI CTCTTC 3 cut(s) 762, 1658, 1713
EciI GGCGGA 1 cut(s) 2057
Ecl136II GAGCTC 2 cut(s) 1558, 2017
Eco130I CCWWGG 3 cut(s) 273, 1488, 2037
Eco24I GRGCYC 2 cut(s) 1560, 2019
Eco47I GGWCC 2 cut(s) 190, 1194
Eco47III AGCGCT 1 cut(s) 2304
Eco53kI GAGCTC 2 cut(s) 1558, 2017
Eco57I CTGAAG 3 cut(s) 228, 405, 2535
Eco72I CACGTG 1 cut(s) 1860
Eco81I CCTNAGG 2 cut(s) 15, 83
Eco91I GGTNACC 2 cut(s) 735, 2348
EcoICRI GAGCTC 2 cut(s) 1558, 2017
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoO65I GGTNACC 2 cut(s) 735, 2348
EcoRI GAATTC 2 cut(s) 2241, 2356
EcoRII CCWGG 1 cut(s) 1208
EcoT14I CCWWGG 3 cut(s) 273, 1488, 2037
EcoT22I ATGCAT 1 cut(s) 1390
EcoT38I GRGCYC 2 cut(s) 1560, 2019
ErhI CCWWGG 3 cut(s) 273, 1488, 2037
FalI AAGNNNNNCTT 4 cut(s) 272, 304, 2398, 2430
FaqI GGGAC 5 cut(s) 581, 664, 1305, 1358, 2443
FauI CCCGC 3 cut(s) 1184, 1730, 1952
FauNDI CATATG 2 cut(s) 561, 1703
FbaI TGATCA 3 cut(s) 1381, 1711, 2272
Fnu4HI GCNGC 9 cut(s) 668, 790, 1050, 1567, 1730, 1946, 2228, 2412, 2636
FokI GGATG 4 cut(s) 74, 458, 526, 1858
FriOI GRGCYC 2 cut(s) 1560, 2019
Fsp4HI GCNGC 9 cut(s) 668, 790, 1050, 1567, 1730, 1946, 2228, 2412, 2636
FspBI CTAG 4 cut(s) 255, 387, 1136, 1475
FspI TGCGCA 1 cut(s) 551
GlaI GCGC 5 cut(s) 75, 551, 1759, 2226, 2304
GluI GCNGC 9 cut(s) 668, 790, 1050, 1567, 1730, 1946, 2228, 2412, 2636
GsaI CCCAGC 4 cut(s) 363, 1701, 2430, 2642
GsuI CTGGAG 1 cut(s) 1421
HaeII RGCGCY 1 cut(s) 2306
HaeIII GGCC 3 cut(s) 1161, 1583, 1898
HapII CCGG 2 cut(s) 1376, 2169
HhaI GCGC 5 cut(s) 76, 552, 1760, 2227, 2305
Hin6I GCGC 5 cut(s) 74, 550, 1758, 2225, 2303
HinP1I GCGC 5 cut(s) 74, 550, 1758, 2225, 2303
HincII GTYRAC 3 cut(s) 2104, 2332, 2491
HindII GTYRAC 3 cut(s) 2104, 2332, 2491
HindIII AAGCTT 1 cut(s) 1574
HpaI GTTAAC 1 cut(s) 2491
HpaII CCGG 2 cut(s) 1376, 2169
Hpy166II GTNNAC 8 cut(s) 149, 1274, 1598, 1670, 2104, 2332, 2388, 2491
Hpy188III TCNNGA 8 cut(s) 303, 602, 628, 854, 1715, 1781, 1883, 1994
Hpy8I GTNNAC 8 cut(s) 149, 1274, 1598, 1670, 2104, 2332, 2388, 2491
Hpy99I CGWCG 2 cut(s) 352, 1976
HpyAV CCTTC 9 cut(s) 203, 274, 278, 539, 1438, 1479, 1840, 2393, 2475
HpyCH4III ACNGT 5 cut(s) 735, 1185, 1910, 2254, 2552
HpyCH4IV ACGT 7 cut(s) 594, 623, 700, 1020, 1859, 1974, 2524
HpySE526I ACGT 7 cut(s) 594, 623, 700, 1020, 1859, 1974, 2524
HspAI GCGC 5 cut(s) 74, 550, 1758, 2225, 2303
Ksp22I TGATCA 3 cut(s) 1381, 1711, 2272
KspAI GTTAAC 1 cut(s) 2491
LmnI GCTCC 7 cut(s) 461, 1084, 1555, 1677, 2005, 2014, 2022
Lsp1109I GCAGC 9 cut(s) 654, 776, 1036, 1553, 1716, 1957, 2239, 2398, 2622
LweI GCATC 6 cut(s) 52, 700, 1250, 1945, 2112, 2146
MaeI CTAG 4 cut(s) 255, 387, 1136, 1475
MaeII ACGT 7 cut(s) 594, 623, 700, 1020, 1859, 1974, 2524
MaeIII GTNAC 8 cut(s) 735, 1170, 1460, 1510, 1867, 2281, 2311, 2348
MfeI CAATTG 2 cut(s) 869, 1770
MflI RGATCY 3 cut(s) 343, 525, 578
MhlI GDGCHC 4 cut(s) 339, 1560, 1698, 2019
MlyI GAGTC 3 cut(s) 1487, 2099, 2428
MmeI TCCRAC 5 cut(s) 217, 371, 1062, 1229, 1899
Mph1103I ATGCAT 1 cut(s) 1390
MroXI GAANNNNTTC 1 cut(s) 1143
MslI CAYNNNNRTG 1 cut(s) 1528
MspA1I CMGCKG 2 cut(s) 1191, 1915
MspI CCGG 2 cut(s) 1376, 2169
MspR9I CCNGG 3 cut(s) 1210, 1376, 2169
MunI CAATTG 2 cut(s) 869, 1770
Mva1269I GAATGC 1 cut(s) 394
MvaI CCWGG 1 cut(s) 1210
NciI CCSGG 2 cut(s) 1376, 2169
NcoI CCATGG 2 cut(s) 1488, 2037
NdeI CATATG 2 cut(s) 561, 1703
NlaIV GGNNCC 5 cut(s) 43, 345, 463, 527, 1195
NmeAIII GCCGAG 2 cut(s) 696, 1874
NmuCI GTSAC 5 cut(s) 1460, 1510, 1867, 2281, 2348
NsbI TGCGCA 1 cut(s) 551
NsiI ATGCAT 1 cut(s) 1390
NspI RCATGY 3 cut(s) 1118, 1684, 2069
OliI CACNNNNGTG 1 cut(s) 1528
PaeI GCATGC 1 cut(s) 1118
PagI TCATGA 1 cut(s) 1714
PctI GAATGC 1 cut(s) 394
PdmI GAANNNNTTC 1 cut(s) 1143
PfeI GAWTC 8 cut(s) 26, 329, 743, 752, 875, 2085, 2139, 2603
PflMI CCANNNNNTGG 3 cut(s) 1081, 1704, 1975
PkrI GCNGC 9 cut(s) 669, 791, 1051, 1568, 1731, 1947, 2229, 2413, 2637
PleI GAGTC 3 cut(s) 1487, 2099, 2427
PmaCI CACGTG 1 cut(s) 1860
PmlI CACGTG 1 cut(s) 1860
PpsI GAGTC 3 cut(s) 1487, 2099, 2427
Ppu21I YACGTR 1 cut(s) 1860
PshAI GACNNNNGTC 1 cut(s) 484
PshBI ATTAAT 1 cut(s) 1350
Psp124BI GAGCTC 2 cut(s) 1560, 2019
Psp1406I AACGTT 1 cut(s) 623
Psp6I CCWGG 1 cut(s) 1208
PspCI CACGTG 1 cut(s) 1860
PspEI GGTNACC 2 cut(s) 735, 2348
PspFI CCCAGC 4 cut(s) 359, 1697, 2426, 2638
PspGI CCWGG 1 cut(s) 1208
PspN4I GGNNCC 5 cut(s) 43, 345, 463, 527, 1195
PspPI GGNCC 2 cut(s) 190, 1194
PstNI CAGNNNCTG 2 cut(s) 789, 1566
PsuI RGATCY 3 cut(s) 343, 525, 578
PvuII CAGCTG 1 cut(s) 1915
RsaI GTAC 5 cut(s) 374, 1187, 1200, 2364, 2554
RsaNI GTAC 5 cut(s) 373, 1186, 1199, 2363, 2553
RseI CAYNNNNRTG 1 cut(s) 1528
SacI GAGCTC 2 cut(s) 1560, 2019
SatI GCNGC 9 cut(s) 668, 790, 1050, 1567, 1730, 1946, 2228, 2412, 2636
Sau96I GGNCC 2 cut(s) 190, 1194
SchI GAGTC 3 cut(s) 1487, 2099, 2428
ScrFI CCNGG 3 cut(s) 1210, 1376, 2169
SduI GDGCHC 4 cut(s) 339, 1560, 1698, 2019
SfaNI GCATC 6 cut(s) 52, 700, 1250, 1945, 2112, 2146
SfcI CTRYAG 1 cut(s) 1255
SinI GGWCC 2 cut(s) 190, 1194
SmiMI CAYNNNNRTG 1 cut(s) 1528
SmlI CTYRAG 4 cut(s) 901, 1544, 1613, 2577
SmoI CTYRAG 4 cut(s) 901, 1544, 1613, 2577
SphI GCATGC 1 cut(s) 1118
SsiI CCGC 6 cut(s) 11, 1191, 1737, 1959, 2042, 2112
SspI AATATT 1 cut(s) 2560
SspMI CTAG 4 cut(s) 255, 387, 1136, 1475
SstI GAGCTC 2 cut(s) 1560, 2019
StyD4I CCNGG 3 cut(s) 1208, 1374, 2167
StyI CCWWGG 3 cut(s) 273, 1488, 2037
TaaI ACNGT 5 cut(s) 735, 1185, 1910, 2254, 2552
TaiI ACGT 7 cut(s) 597, 626, 703, 1023, 1862, 1977, 2527
TaqI TCGA 6 cut(s) 302, 1090, 1780, 1923, 2031, 2382
TatI WGTACW 3 cut(s) 372, 1185, 2362
TfiI GAWTC 8 cut(s) 26, 329, 743, 752, 875, 2085, 2139, 2603
TscAI CASTG 5 cut(s) 561, 1597, 2121, 2290, 2395
TseFI GTSAC 5 cut(s) 1460, 1510, 1867, 2281, 2348
TseI GCWGC 9 cut(s) 667, 789, 1049, 1566, 1729, 1945, 2227, 2411, 2635
Tsp45I GTSAC 5 cut(s) 1460, 1510, 1867, 2281, 2348
TspDTI ATGAA 8 cut(s) 183, 387, 602, 836, 1731, 2219, 2409, 2535
TspGWI ACGGA 4 cut(s) 365, 1186, 2027, 2357
TspRI CASTG 5 cut(s) 561, 1597, 2121, 2290, 2395
Van91I CCANNNNNTGG 3 cut(s) 1081, 1704, 1975
VpaK11BI GGWCC 2 cut(s) 190, 1194
VspI ATTAAT 1 cut(s) 1350
XagI CCTNNNNNAGG 1 cut(s) 86
XapI RAATTY 8 cut(s) 67, 170, 640, 973, 1776, 2241, 2340, 2356
XceI RCATGY 3 cut(s) 1118, 1684, 2069
XmnI GAANNNNTTC 1 cut(s) 1143
XspI CTAG 4 cut(s) 255, 387, 1136, 1475
Zsp2I ATGCAT 1 cut(s) 1390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.