Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000546

Physical Location & Seq

Genomic Coordinates Forward (+)

55688186 .. 55694079

Gene Structure 5894 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00374710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTACCCGACTCCAACTTTTGACCTTCACACCCACACAAGTCATCCTTTCCCGATCCCAAACCGATCTTGTCCAGCAAATCTTCAGCATCCAAAAACTAGTCGAGATCTTCCAAGTAAATCTTCTCGCTGCCTCCGTGATGCAATGTTTCTTTTCTATATCATCAACACGAGCTTGAATCTTCATCGGCGTTCTCTTCAACTTTTCGACGCTGCCGTCAACCCCGTGATTAAGTCTTTCTTTTGCTCAACAAATTTTGTGACTCTGTCAACAACAACCTCGAAGAATTGCCGACATGAGTTGGTTCAGTTATGGATAGCTGAAGGCTTTATTAGAGAGAGGCATGGGGAGAGAATAGAAGATATTGCTGGCGAGCATTTCAATTCCTTGGAGAAGGAGGGCTTCTTTGTGTTTTCAAGATGTGATTTCACTGTGGATTTTGATTCAGTGCTCTGGGCTCCCGCGGATAATCCCAGCAACTTCTTGTACAAAGTCAATCCTATCAAGCATTCATTATTGGAAGATACCATTTCTTCAGGTAATTATTTCAAAGCAGTGGATGGTAAGTTGGATGGAGCCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

PP2C

Protein Analysis

194

Amino Acids

22.12

Weight (kDa)

6.74

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_DRP	PF23559	98 - 137	2e-10	Disease resistance protein Winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica	MD14G1049300.v1.1
rosa_chinensis	RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata	RLG00000001164 RLG00000013941
rosa_multiflora	Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii	Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa	Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha	Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana	Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	215
AccII	CGCG	1 cut(s)	464
AciI	CCGC	2 cut(s)	462, 464
AclWI	GGATC	1 cut(s)	49
AcsI	RAATTY	1 cut(s)	253
AcuI	CTGAAG	3 cut(s)	68, 342, 519
AfaI	GTAC	2 cut(s)	5, 488
AgsI	TTSAA	5 cut(s)	178, 200, 382, 417, 550
AhlI	ACTAGT	1 cut(s)	98
AjuI	GAANNNNNNNTTGG	2 cut(s)	106, 138
AluBI	AGCT	2 cut(s)	174, 320
AluI	AGCT	2 cut(s)	174, 320
Alw21I	GWGCWC	1 cut(s)	453
AlwI	GGATC	1 cut(s)	49
ApeKI	GCWGC	2 cut(s)	129, 212
ApoI	RAATTY	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	460
BauI	CACGAG	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	2 cut(s)	116, 199
BccI	CCATC	2 cut(s)	554, 566
BceAI	ACGGC	1 cut(s)	200
BcuI	ACTAGT	1 cut(s)	98
BfaI	CTAG	1 cut(s)	99
BglII	AGATCT	1 cut(s)	106
BisI	GCNGC	2 cut(s)	130, 213
BlsI	GCNGC	2 cut(s)	131, 214
BmiI	GGNNCC	2 cut(s)	459, 577
BmsI	GCATC	2 cut(s)	97, 130
BsaJI	CCNNGG	2 cut(s)	387, 462
Bse3DI	GCAATG	1 cut(s)	150
BseDI	CCNNGG	2 cut(s)	387, 462
BseGI	GGATG	4 cut(s)	43, 88, 565, 577
BseMI	GCAATG	1 cut(s)	150
BseXI	GCAGC	2 cut(s)	116, 199
BseYI	CCCAGC	1 cut(s)	473
Bsh1236I	CGCG	1 cut(s)	464
BsiHKAI	GWGCWC	1 cut(s)	453
BsmI	GAATGC	1 cut(s)	508
Bsp1286I	GDGCHC	2 cut(s)	453, 460
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	3 cut(s)	54, 65, 106
BspACI	CCGC	2 cut(s)	462, 464
BspFNI	CGCG	1 cut(s)	464
BspLI	GGNNCC	2 cut(s)	459, 577
BspPI	GGATC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	150
BsrGI	TGTACA	1 cut(s)	486
BssECI	CCNNGG	2 cut(s)	387, 462
BssMI	GATC	3 cut(s)	54, 65, 106
BssSI	CACGAG	1 cut(s)	169
BssT1I	CCWWGG	1 cut(s)	387
Bst2BI	CACGAG	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	433
Bst6I	CTCTTC	1 cut(s)	201
BstAUI	TGTACA	1 cut(s)	486
BstC8I	GCNNGC	2 cut(s)	370, 374
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	4 cut(s)	43, 88, 565, 577
BstFNI	CGCG	1 cut(s)	464
BstKTI	GATC	3 cut(s)	57, 68, 109
BstMBI	GATC	3 cut(s)	54, 65, 106
BstUI	CGCG	1 cut(s)	464
BstV1I	GCAGC	2 cut(s)	116, 199
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BtgI	CCRYGG	1 cut(s)	462
BtsCI	GGATG	4 cut(s)	43, 88, 565, 577
BtsI	GCAGTG	1 cut(s)	561
BtsIMutI	CAGTG	3 cut(s)	429, 453, 561
Cac8I	GCNNGC	2 cut(s)	370, 374
Cfr42I	CCGCGG	1 cut(s)	465
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	4, 487
CviAII	CATG	2 cut(s)	296, 344
CviJI	RGCY	6 cut(s)	174, 320, 327, 402, 458, 578
CviKI_1	RGCY	6 cut(s)	174, 320, 327, 402, 458, 578
CviQI	GTAC	2 cut(s)	4, 487
DpnI	GATC	3 cut(s)	56, 67, 108
DpnII	GATC	3 cut(s)	54, 65, 106
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	387
Eco24I	GRGCYC	1 cut(s)	460
Eco57I	CTGAAG	3 cut(s)	68, 342, 519
EcoT14I	CCWWGG	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	2 cut(s)	299, 347
FaiI	YATR	4 cut(s)	159, 297, 313, 345
FalI	AAGNNNNNCTT	8 cut(s)	31, 63, 106, 138, 224, 256, 386, 418
FatI	CATG	2 cut(s)	295, 343
FauI	CCCGC	1 cut(s)	469
Fnu4HI	GCNGC	2 cut(s)	130, 213
FokI	GGATG	3 cut(s)	30, 75, 572
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	2 cut(s)	130, 213
FspBI	CTAG	1 cut(s)	99
GluI	GCNGC	2 cut(s)	130, 213
GsaI	CCCAGC	1 cut(s)	477
HgaI	GACGC	1 cut(s)	218
Hin1II	CATG	2 cut(s)	299, 347
HincII	GTYRAC	2 cut(s)	220, 270
HindII	GTYRAC	2 cut(s)	220, 270
HinfI	GANTC	4 cut(s)	10, 178, 262, 443
Hpy166II	GTNNAC	2 cut(s)	220, 270
Hpy188III	TCNNGA	3 cut(s)	52, 104, 417
Hpy8I	GTNNAC	2 cut(s)	220, 270
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	3 cut(s)	35, 317, 388
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4V	TGCA	1 cut(s)	143
Hsp92II	CATG	2 cut(s)	299, 347
KspI	CCGCGG	1 cut(s)	465
Kzo9I	GATC	3 cut(s)	54, 65, 106
LmnI	GCTCC	2 cut(s)	463, 575
LpnPI	CCDG	5 cut(s)	87, 354, 439, 487, 522
Lsp1109I	GCAGC	2 cut(s)	116, 199
LweI	GCATC	2 cut(s)	97, 130
MaeI	CTAG	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	3 cut(s)	56, 67, 108
MboI	GATC	3 cut(s)	54, 65, 106
MboII	GAAGA	9 cut(s)	74, 101, 114, 173, 188, 295, 371, 525, 533
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	2 cut(s)	453, 460
MluCI	AATT	4 cut(s)	253, 286, 382, 541
MlyI	GAGTC	2 cut(s)	4, 256
MmeI	TCCRAC	2 cut(s)	38, 549
MnlI	CCTC	4 cut(s)	143, 289, 333, 391
MseI	TTAA	2 cut(s)	231, 583
MspA1I	CMGCKG	1 cut(s)	464
Mva1269I	GAATGC	1 cut(s)	508
MvnI	CGCG	1 cut(s)	464
NdeII	GATC	3 cut(s)	54, 65, 106
NlaIII	CATG	2 cut(s)	299, 347
NlaIV	GGNNCC	2 cut(s)	459, 577
NmuCI	GTSAC	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	2 cut(s)	133, 213
PctI	GAATGC	1 cut(s)	508
PfeI	GAWTC	2 cut(s)	178, 443
PflFI	GACNNNGTC	1 cut(s)	265
PkrI	GCNGC	2 cut(s)	131, 214
PleI	GAGTC	2 cut(s)	4, 256
PpsI	GAGTC	2 cut(s)	4, 256
PspFI	CCCAGC	1 cut(s)	473
PspN4I	GGNNCC	2 cut(s)	459, 577
PsuI	RGATCY	1 cut(s)	106
PsyI	GACNNNGTC	1 cut(s)	265
RsaI	GTAC	2 cut(s)	5, 488
RsaNI	GTAC	2 cut(s)	4, 487
SacII	CCGCGG	1 cut(s)	465
SaqAI	TTAA	2 cut(s)	231, 583
SatI	GCNGC	2 cut(s)	130, 213
Sau3AI	GATC	3 cut(s)	54, 65, 106
SchI	GAGTC	2 cut(s)	4, 256
SduI	GDGCHC	2 cut(s)	453, 460
SetI	ASST	5 cut(s)	27, 176, 281, 322, 541
SfaNI	GCATC	2 cut(s)	97, 130
Sfr303I	CCGCGG	1 cut(s)	465
SgrBI	CCGCGG	1 cut(s)	465
SpeI	ACTAGT	1 cut(s)	98
Sse9I	AATT	4 cut(s)	253, 286, 382, 541
SsiI	CCGC	2 cut(s)	462, 464
SspMI	CTAG	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	1 cut(s)	433
TaqI	TCGA	3 cut(s)	103, 207, 281
TasI	AATT	4 cut(s)	253, 286, 382, 541
TatI	WGTACW	1 cut(s)	486
TfiI	GAWTC	2 cut(s)	178, 443
Tru1I	TTAA	2 cut(s)	231, 583
Tru9I	TTAA	2 cut(s)	231, 583
TscAI	CASTG	3 cut(s)	436, 453, 561
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	2 cut(s)	129, 212
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	173, 501
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	3 cut(s)	436, 453, 561
Tth111I	GACNNNGTC	1 cut(s)	265
XapI	RAATTY	1 cut(s)	253
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.