Rmu_co8331033.1_g000001

ADP binding

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8331033.1
Physical Location & Seq
Reverse (-)
2 .. 976
975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8331033.1_g000001.1.cds

Sequence Viewer

Length: 871 bp
gcttggagcaggttgccaaggctgttgaatgcaacaaactaatactccctgttttcgatgatgtggatccaattgaactccgacttcaagagggatcagttgcggaagctttcttcaagcacgaagaaacctttaaagacaacccagacaaggtgcgaaaatggagagaagctataaatcgcgtacccatatcggttggagttgcggcagctttcttcaacaacaaagaagcctttaaagacaacccagataaggcgcgaaaatggagagaagctatatatcaaggacccatatcggtaggatggtctttacagtctagggatgaatcccaagctattgttggaacagtttttgaagaattatatggttttcctgcacctccactgggattattatttctctattgctccctcttccccgagggttacgaattcaggaaacatgagttggttcaattgtggatagctcaaggttttgatatgagagagcatcgcggagagacaatggaagatgctggcattaagcatttcaacactgtggagagtcaaggcttttttgtgcgctccggaagtgctgatttaaaagtagaatatgatgaggtgatcactgtgcccttttatgtcacccccagcttcttctacaaagtaaatccttctaagctttcacttttggaaaacaattgctccagtggtaaatattgcagagttgtggatggcaagtttgatgaagcatccgaatcaagcacacaacatatgtctttgatttatcaaggcattgatgagatggcttttggtgttattcagaaatttaagaatctgcgcaccttacttcttctcgctggttgtcagtcttccatcaaatgtgttcctgc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

290

Amino Acids

32.89

Weight (kDa)

5.32

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000546)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica MD14G1049300.v1.1
rosa_chinensis RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata RLG00000001164 RLG00000013941
rosa_multiflora Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 820
AccII CGCG 3 cut(s) 182, 258, 494
AccIII TCCGGA 1 cut(s) 565
AciI CCGC 3 cut(s) 103, 205, 494
AclWI GGATC 3 cut(s) 61, 74, 102
AcsI RAATTY 2 cut(s) 430, 805
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 3 cut(s) 150, 252, 385
AgsI TTSAA 8 cut(s) 28, 76, 88, 117, 219, 355, 454, 531
AjuI GAANNNNNNNTTGG 2 cut(s) 430, 462
AluBI AGCT 8 cut(s) 109, 172, 211, 274, 334, 466, 632, 660
AluI AGCT 8 cut(s) 109, 172, 211, 274, 334, 466, 632, 660
Alw26I GTCTC 1 cut(s) 493
AlwI GGATC 3 cut(s) 61, 74, 102
Ama87I CYCGRG 1 cut(s) 418
Aor13HI TCCGGA 1 cut(s) 565
ApeKI GCWGC 1 cut(s) 208
ApoI RAATTY 2 cut(s) 430, 805
AspLEI GCGC 3 cut(s) 258, 563, 821
AspS9I GGNCC 1 cut(s) 286
AsuHPI GGTGA 2 cut(s) 612, 615
AvaI CYCGRG 1 cut(s) 418
AvaII GGWCC 1 cut(s) 286
BaeGI GKGCMC 1 cut(s) 614
BamHI GGATCC 1 cut(s) 66
BbsI GAAGAC 1 cut(s) 842
BbvI GCAGC 1 cut(s) 220
BccI CCATC 4 cut(s) 296, 706, 777, 862
BclI TGATCA 1 cut(s) 602
BcoDI GTCTC 1 cut(s) 493
BfaI CTAG 1 cut(s) 317
BisI GCNGC 2 cut(s) 206, 209
BlsI GCNGC 2 cut(s) 207, 210
Bme18I GGWCC 1 cut(s) 286
BmeT110I CYCGRG 1 cut(s) 418
BmgT120I GGNCC 1 cut(s) 286
BmiI GGNNCC 2 cut(s) 68, 288
BmrI ACTGGG 1 cut(s) 394
BmsI GCATC 3 cut(s) 498, 501, 739
BmuI ACTGGG 1 cut(s) 394
BpiI GAAGAC 1 cut(s) 842
BpmI CTGGAG 1 cut(s) 669
BpuEI CTTGAG 1 cut(s) 452
BsaBI GATNNNNATC 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 17, 419
BsaWI WCCGGW 1 cut(s) 565
BsaXI ACNNNNNCTCC 4 cut(s) 29, 59, 667, 697
Bsc4I CCNNNNNNNGG 3 cut(s) 150, 252, 385
Bse1I ACTGG 2 cut(s) 389, 686
Bse8I GATNNNNATC 1 cut(s) 65
BseAI TCCGGA 1 cut(s) 565
BseDI CCNNGG 2 cut(s) 17, 419
BseGI GGATG 4 cut(s) 307, 327, 717, 730
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 3 cut(s) 150, 252, 385
BseNI ACTGG 2 cut(s) 389, 686
BseSI GKGCMC 1 cut(s) 614
BseXI GCAGC 1 cut(s) 220
BseYI CCCAGC 1 cut(s) 628
BsgI GTGCAG 1 cut(s) 359
Bsh1236I CGCG 3 cut(s) 182, 258, 494
BsiHKCI CYCGRG 1 cut(s) 418
BsiSI CCGG 1 cut(s) 566
BslI CCNNNNNNNGG 3 cut(s) 150, 252, 385
BsmAI GTCTC 1 cut(s) 493
BsmI GAATGC 1 cut(s) 34
BsoBI CYCGRG 1 cut(s) 418
Bsp1286I GDGCHC 1 cut(s) 614
Bsp13I TCCGGA 1 cut(s) 565
Bsp143I GATC 3 cut(s) 66, 94, 602
BspACI CCGC 3 cut(s) 103, 205, 494
BspEI TCCGGA 1 cut(s) 565
BspFNI CGCG 3 cut(s) 182, 258, 494
BspLI GGNNCC 2 cut(s) 68, 288
BspPI GGATC 3 cut(s) 61, 74, 102
BsrI ACTGG 2 cut(s) 389, 686
BssECI CCNNGG 2 cut(s) 17, 419
BssMI GATC 3 cut(s) 66, 94, 602
BssT1I CCWWGG 1 cut(s) 17
Bst4CI ACNGT 4 cut(s) 314, 348, 537, 609
Bst6I CTCTTC 1 cut(s) 418
BstC8I GCNNGC 1 cut(s) 516
BstDEI CTNAG 1 cut(s) 656
BstF5I GGATG 4 cut(s) 307, 327, 717, 730
BstFNI CGCG 3 cut(s) 182, 258, 494
BstHHI GCGC 3 cut(s) 258, 563, 821
BstKTI GATC 3 cut(s) 69, 97, 605
BstMAI GTCTC 1 cut(s) 493
BstMBI GATC 3 cut(s) 66, 94, 602
BstSLI GKGCMC 1 cut(s) 614
BstUI CGCG 3 cut(s) 182, 258, 494
BstV1I GCAGC 1 cut(s) 220
BstV2I GAAGAC 1 cut(s) 842
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BtgZI GCGATG 1 cut(s) 475
BtsCI GGATG 4 cut(s) 307, 327, 717, 730
BtsIMutI CAGTG 4 cut(s) 382, 533, 605, 693
Cac8I GCNNGC 1 cut(s) 516
CfoI GCGC 3 cut(s) 258, 563, 821
Cfr13I GGNCC 1 cut(s) 286
Csp6I GTAC 1 cut(s) 184
CviAII CATG 1 cut(s) 442
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 656
DpnI GATC 3 cut(s) 68, 96, 604
DpnII GATC 3 cut(s) 66, 94, 602
DraI TTTAAA 3 cut(s) 135, 237, 581
Eam1104I CTCTTC 1 cut(s) 418
EarI CTCTTC 1 cut(s) 418
Eco130I CCWWGG 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 286
Eco88I CYCGRG 1 cut(s) 418
EcoO109I RGGNCCY 1 cut(s) 286
EcoRI GAATTC 1 cut(s) 430
EcoT14I CCWWGG 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 17
FaeI CATG 1 cut(s) 445
FatI CATG 1 cut(s) 441
FauNDI CATATG 1 cut(s) 752
FbaI TGATCA 1 cut(s) 602
Fnu4HI GCNGC 2 cut(s) 206, 209
FokI GGATG 4 cut(s) 314, 334, 717, 724
Fsp4HI GCNGC 2 cut(s) 206, 209
FspBI CTAG 1 cut(s) 317
FspI TGCGCA 1 cut(s) 820
GlaI GCGC 3 cut(s) 257, 562, 820
GluI GCNGC 2 cut(s) 206, 209
GsaI CCCAGC 1 cut(s) 632
GsuI CTGGAG 1 cut(s) 669
HapII CCGG 1 cut(s) 566
HhaI GCGC 3 cut(s) 258, 563, 821
Hin1II CATG 1 cut(s) 445
Hin6I GCGC 3 cut(s) 256, 561, 819
HinP1I GCGC 3 cut(s) 256, 561, 819
HindIII AAGCTT 2 cut(s) 107, 658
HinfI GANTC 4 cut(s) 325, 543, 736, 813
HpaII CCGG 1 cut(s) 566
HphI GGTGA 2 cut(s) 612, 615
Hpy188I TCNGA 3 cut(s) 82, 735, 803
Hpy188III TCNNGA 3 cut(s) 88, 435, 566
HpyAV CCTTC 1 cut(s) 662
HpyCH4III ACNGT 4 cut(s) 314, 348, 537, 609
HpyCH4V TGCA 3 cut(s) 32, 376, 701
HpyF3I CTNAG 1 cut(s) 656
Hsp92II CATG 1 cut(s) 445
HspAI GCGC 3 cut(s) 256, 561, 819
Kpn2I TCCGGA 1 cut(s) 565
Ksp22I TGATCA 1 cut(s) 602
Kzo9I GATC 3 cut(s) 66, 94, 602
LmnI GCTCC 4 cut(s) 6, 412, 568, 688
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 3 cut(s) 498, 501, 739
MaeI CTAG 1 cut(s) 317
MaeIII GTNAC 2 cut(s) 424, 621
MalI GATC 3 cut(s) 68, 96, 604
MboI GATC 3 cut(s) 66, 94, 602
MboII GAAGA 9 cut(s) 105, 136, 207, 367, 405, 520, 627, 823, 842
MfeI CAATTG 3 cut(s) 71, 454, 678
MflI RGATCY 1 cut(s) 66
MhlI GDGCHC 1 cut(s) 614
MluCI AATT 6 cut(s) 71, 358, 430, 454, 678, 805
MlyI GAGTC 1 cut(s) 552
MmeI TCCRAC 3 cut(s) 105, 177, 321
MnlI CCTC 5 cut(s) 84, 389, 414, 421, 591
MroI TCCGGA 1 cut(s) 565
MseI TTAA 5 cut(s) 134, 236, 521, 580, 809
MspI CCGG 1 cut(s) 566
MunI CAATTG 3 cut(s) 71, 454, 678
Mva1269I GAATGC 1 cut(s) 34
MvnI CGCG 3 cut(s) 182, 258, 494
NdeI CATATG 1 cut(s) 752
NdeII GATC 3 cut(s) 66, 94, 602
NlaIII CATG 1 cut(s) 445
NlaIV GGNNCC 2 cut(s) 68, 288
NmuCI GTSAC 1 cut(s) 621
NsbI TGCGCA 1 cut(s) 820
PctI GAATGC 1 cut(s) 34
PfeI GAWTC 3 cut(s) 325, 736, 813
PkrI GCNGC 2 cut(s) 207, 210
PleI GAGTC 1 cut(s) 551
PpsI GAGTC 1 cut(s) 551
PpuMI RGGWCCY 1 cut(s) 286
Psp5II RGGWCCY 1 cut(s) 286
PspFI CCCAGC 1 cut(s) 628
PspN4I GGNNCC 2 cut(s) 68, 288
PspPI GGNCC 1 cut(s) 286
PspPPI RGGWCCY 1 cut(s) 286
PsuI RGATCY 1 cut(s) 66
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SaqAI TTAA 5 cut(s) 134, 236, 521, 580, 809
SatI GCNGC 2 cut(s) 206, 209
Sau3AI GATC 3 cut(s) 66, 94, 602
Sau96I GGNCC 1 cut(s) 286
SchI GAGTC 1 cut(s) 552
SduI GDGCHC 1 cut(s) 614
SfaNI GCATC 3 cut(s) 498, 501, 739
SinI GGWCC 1 cut(s) 286
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
Sse9I AATT 6 cut(s) 71, 358, 430, 454, 678, 805
SsiI CCGC 3 cut(s) 103, 205, 494
SspI AATATT 1 cut(s) 697
SspMI CTAG 1 cut(s) 317
StyI CCWWGG 1 cut(s) 17
TaaI ACNGT 4 cut(s) 314, 348, 537, 609
TaqI TCGA 1 cut(s) 56
TasI AATT 6 cut(s) 71, 358, 430, 454, 678, 805
TauI GCSGC 1 cut(s) 208
TfiI GAWTC 3 cut(s) 325, 736, 813
Tru1I TTAA 5 cut(s) 134, 236, 521, 580, 809
Tru9I TTAA 5 cut(s) 134, 236, 521, 580, 809
TscAI CASTG 4 cut(s) 389, 540, 612, 693
TseFI GTSAC 1 cut(s) 621
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 621
TspDTI ATGAA 2 cut(s) 338, 740
TspRI CASTG 4 cut(s) 389, 540, 612, 693
VpaK11BI GGWCC 1 cut(s) 286
XapI RAATTY 2 cut(s) 430, 805
XcmI CCANNNNNNNNNTGG 1 cut(s) 337
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.