Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000546

Physical Location & Seq

Genomic Coordinates Reverse (-)

4797020 .. 4799635

Gene Structure 2616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0038500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGATCCGTGCCCGTTCGTACGGATCCTCATCGGAGACTTGACCCTCAAGTTTCCCAGCGTCTCCAAACCCTCCTTCTCCACCGTCCACCCTTCCTCCTCTCCCTGCTTCTGCAAAATCAAGCTCACCAACTTCCCCCACCAGTTCTCCGCCGTCCCCCTCATCCTCGACGACTCCGCCTCCGCCGCTCAGACCACCACCACCACCGCCGCCGCCGCCCGCTCCCACTCCCTCAACGCCTGCTTCAACCTCACCAAGCCCCAAATCGAAACCCTATCCTCCAAGCGCCCCAGCCTCTCCATCTCGATCTACACCGGCCGCCGCGGCGCCACCTGCGGCCTCAACTCCGCCAAGCTCCTCGGCCGCGTCACCGTCCCGCTCGCCGAGCTCGCCACCGCCGTGTCCCGCCCCGTCGTCTACCAGAACGGCTGGATTGGAATCGGTGGCAAGAAGTCCGGGTCCGGGTCCGGGTCCGGGTCCTCGCAGTCGCAGTTCTTTTTAAGCGTCCGGGCCGAACCCGACCCGAGATTCGTGTTCAAGTTCGACGGAGAACCCGAGTGTAGCCCCCAGGTTTTCCAGGTCCAGGGAAATGTAAAGCAGCCGGTCTTCACTTGCAAATTTGGGTTCAGAAACGCCTCCGATATGCAATCACGGTCACTGTCCGAGCCGGGTACCCCAAGGAATTGGTTAGTGCCGTTTATGGGAGGCAGCCAAAAGGAGCAGAGCGCGAAAGAGAGGAAAGGCTGGTCGCTGACGATCCACGACCTCTCCGGCTCGCCGGTCGCGGCGGCGTCGATGGTGACTCCCTTCGTCGCCTCCCCCGGCTCGCAGCGCGTGAGCCGGTCCAACCCCGGCGCGTGGCTGATTCTGAGACCGGAGGACGGCACGTGGAAGCCGTGGGGCCGACTCGAGACGTGGCTGGAGCGCAGCGGCTCCGACACCGTCGGGTACAAGTTCGAGCTGCTCAGCACGATTCTGGCCAACTCCACCGTCAGCGCGTCGAACGGCGGGAAGTTCACGATCGACTTGACGTCGAGTCTGACGCCGGTGAACAGTCCGCACAGCAGCTTCGACTTCGGGTCCGCGTCGGGTTCGTCGAGGCCCGGGTCGGGTTCCGGGTCGGACTTCGGGTTCGGGTTGATACCTCAGCTGCTGCAGAGAGGGTTTGTGATGTCGTCGACGGTGGAGGGGATCGGGAAGTGTAGCAAGCCGGAGGTGGAGGTCGGAGTGCAGCACGTGACATGCACGGAGGACGCGGCCGCTTACGTGGCGTTGGCGGCGGCGATGGATCTGAGCATGGATGCTTGCCGGCCGTTTTCACATAAGCTCCGGAAGGAGCTGAGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

PP2C

Protein Analysis

449

Amino Acids

47.91

Weight (kDa)

9.3

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1005	PF06219	1 - 448	1.6e-184	Protein of unknown function (DUF1005)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica	MD14G1049300.v1.1
rosa_chinensis	RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata	RLG00000001164 RLG00000013941
rosa_multiflora	Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii	Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa	Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha	Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana	Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	341
AatII	GACGTC	1 cut(s)	1034
Acc36I	ACCTGC	1 cut(s)	341
Acc65I	GGTACC	1 cut(s)	671
AccB1I	GGYRCC	2 cut(s)	326, 671
AccBSI	CCGCTC	3 cut(s)	188, 222, 379
AccI	GTMKAC	2 cut(s)	417, 1178
AccII	CGCG	9 cut(s)	324, 366, 728, 785, 834, 857, 998, 1085, 1256
AccIII	TCCGGA	1 cut(s)	1329
AclWI	GGATC	6 cut(s)	12, 19, 32, 751, 1199, 1296
AcoI	YGGCCR	5 cut(s)	316, 361, 978, 1257, 1310
AcsI	RAATTY	1 cut(s)	617
AcvI	CACGTG	2 cut(s)	888, 1237
AcyI	GRCGYC	4 cut(s)	327, 791, 1031, 1043
AfaI	GTAC	3 cut(s)	21, 673, 950
AfiI	CCNNNNNNNGG	8 cut(s)	462, 468, 474, 583, 701, 858, 881, 1109
AgsI	TTSAA	2 cut(s)	247, 538
AhdI	GACNNNNNGTC	3 cut(s)	1030, 1035, 1078
AjiI	CACGTC	1 cut(s)	915
AjnI	CCWGG	3 cut(s)	567, 576, 582
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AleI	CACNNNNGTG	1 cut(s)	398
AloI	GAACNNNNNNTCC	2 cut(s)	1115, 1147
AluBI	AGCT	8 cut(s)	124, 355, 388, 961, 1068, 1150, 1327, 1339
AluI	AGCT	8 cut(s)	124, 355, 388, 961, 1068, 1150, 1327, 1339
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	4 cut(s)	30, 67, 865, 905
AlwI	GGATC	6 cut(s)	12, 19, 32, 751, 1199, 1296
AlwNI	CAGNNNCTG	1 cut(s)	1153
Ama87I	CYCGRG	4 cut(s)	523, 554, 908, 1103
Aor13HI	TCCGGA	1 cut(s)	1329
AoxI	GGCC	9 cut(s)	316, 337, 361, 510, 901, 978, 1100, 1257, 1310
ApeKI	GCWGC	9 cut(s)	598, 708, 829, 927, 961, 1065, 1150, 1153, 1231
ApoI	RAATTY	1 cut(s)	617
ArsI	GACNNNNNNTTYG	4 cut(s)	512, 544, 1115, 1147
Asp718I	GGTACC	1 cut(s)	671
AspLEI	GCGC	7 cut(s)	288, 329, 728, 834, 857, 927, 998
AsuHPI	GGTGA	5 cut(s)	118, 244, 361, 811, 1060
AvaI	CYCGRG	4 cut(s)	523, 554, 908, 1103
AvaII	GGWCC	7 cut(s)	459, 465, 471, 477, 580, 843, 1080
BaeGI	GKGCMC	1 cut(s)	14
BalI	TGGCCA	1 cut(s)	980
BamHI	GGATCC	2 cut(s)	4, 24
BanI	GGYRCC	2 cut(s)	326, 671
BanII	GRGCYC	1 cut(s)	390
BbrPI	CACGTG	2 cut(s)	888, 1237
BbsI	GAAGAC	1 cut(s)	598
Bbv12I	GWGCWC	1 cut(s)	390
BbvCI	CCTCAGC	2 cut(s)	1146, 1340
BbvI	GCAGC	9 cut(s)	610, 720, 841, 939, 948, 1077, 1137, 1140, 1243
BccI	CCATC	3 cut(s)	308, 790, 1279
BceAI	ACGGC	8 cut(s)	137, 383, 442, 679, 880, 898, 1021, 1297
BciT130I	CCWGG	3 cut(s)	569, 578, 584
BcoDI	GTCTC	4 cut(s)	30, 67, 865, 905
BfmI	CTRYAG	1 cut(s)	1154
BfoI	RGCGCY	2 cut(s)	289, 330
BfuAI	ACCTGC	1 cut(s)	341
BglI	GCCNNNNNGGC	1 cut(s)	324
BlpI	GCTNAGC	1 cut(s)	965
Bme18I	GGWCC	7 cut(s)	459, 465, 471, 477, 580, 843, 1080
BmeRI	GACNNNNNGTC	3 cut(s)	1030, 1035, 1078
BmeT110I	CYCGRG	4 cut(s)	523, 554, 908, 1103
BmgBI	CACGTC	1 cut(s)	915
BmsI	GCATC	1 cut(s)	1291
BpiI	GAAGAC	1 cut(s)	598
BpmI	CTGGAG	1 cut(s)	941
Bpu10I	CCTNAGC	2 cut(s)	1146, 1340
Bpu1102I	GCTNAGC	1 cut(s)	965
BpuEI	CTTGAG	1 cut(s)	32
BsaAI	YACGTR	3 cut(s)	888, 1237, 1267
BsaBI	GATNNNNATC	2 cut(s)	29, 437
BsaHI	GRCGYC	4 cut(s)	327, 791, 1031, 1043
BsaI	GGTCTC	1 cut(s)	865
BsaJI	CCNNGG	9 cut(s)	322, 358, 567, 583, 677, 820, 850, 896, 1103
BsaWI	WCCGGW	2 cut(s)	874, 1329
Bsc4I	CCNNNNNNNGG	8 cut(s)	462, 468, 474, 583, 701, 858, 881, 1109
Bse118I	RCCGGY	6 cut(s)	314, 601, 778, 840, 1045, 1308
Bse1I	ACTGG	1 cut(s)	142
Bse8I	GATNNNNATC	2 cut(s)	29, 437
BseAI	TCCGGA	1 cut(s)	1329
BseBI	CCWGG	3 cut(s)	569, 578, 584
BseDI	CCNNGG	9 cut(s)	322, 358, 567, 583, 677, 820, 850, 896, 1103
BseGI	GGATG	2 cut(s)	162, 1306
BseJI	GATNNNNATC	2 cut(s)	29, 437
BseLI	CCNNNNNNNGG	8 cut(s)	462, 468, 474, 583, 701, 858, 881, 1109
BseMII	CTCAG	6 cut(s)	203, 860, 979, 1160, 1283, 1331
BseNI	ACTGG	1 cut(s)	142
BseRI	GAGGAG	2 cut(s)	88, 347
BseSI	GKGCMC	1 cut(s)	14
BseX3I	CGGCCG	4 cut(s)	316, 361, 1257, 1310
BseXI	GCAGC	9 cut(s)	610, 720, 841, 939, 948, 1077, 1137, 1140, 1243
BseYI	CCCAGC	2 cut(s)	56, 290
BsgI	GTGCAG	1 cut(s)	1250
Bsh1236I	CGCG	9 cut(s)	324, 366, 728, 785, 834, 857, 998, 1085, 1256
Bsh1285I	CGRYCG	6 cut(s)	319, 364, 783, 1023, 1260, 1313
BshFI	GGCC	9 cut(s)	318, 339, 363, 512, 903, 980, 1102, 1259, 1312
BshNI	GGYRCC	2 cut(s)	326, 671
BsiEI	CGRYCG	6 cut(s)	319, 364, 783, 1023, 1260, 1313
BsiHKAI	GWGCWC	1 cut(s)	390
BsiHKCI	CYCGRG	4 cut(s)	523, 554, 908, 1103
BsiWI	CGTACG	1 cut(s)	19
BslFI	GGGAC	3 cut(s)	140, 359, 388
BslI	CCNNNNNNNGG	8 cut(s)	462, 468, 474, 583, 701, 858, 881, 1109
BsmAI	GTCTC	4 cut(s)	30, 67, 865, 905
BsmBI	CGTCTC	2 cut(s)	67, 905
BsmFI	GGGAC	3 cut(s)	140, 359, 388
BsnI	GGCC	9 cut(s)	318, 339, 363, 512, 903, 980, 1102, 1259, 1312
Bso31I	GGTCTC	1 cut(s)	865
BsoBI	CYCGRG	4 cut(s)	523, 554, 908, 1103
Bsp1286I	GDGCHC	2 cut(s)	14, 390
Bsp13I	TCCGGA	1 cut(s)	1329
Bsp143I	GATC	7 cut(s)	4, 24, 306, 756, 1020, 1191, 1288
Bsp1720I	GCTNAGC	1 cut(s)	965
BspANI	GGCC	9 cut(s)	318, 339, 363, 512, 903, 980, 1102, 1259, 1312
BspCNI	CTCAG	6 cut(s)	202, 861, 978, 1159, 1284, 1332
BspEI	TCCGGA	1 cut(s)	1329
BspFNI	CGCG	9 cut(s)	324, 366, 728, 785, 834, 857, 998, 1085, 1256
BspMAI	CTGCAG	1 cut(s)	1158
BspMI	ACCTGC	1 cut(s)	341
BspPI	GGATC	6 cut(s)	12, 19, 32, 751, 1199, 1296
BspT107I	GGYRCC	2 cut(s)	326, 671
BspTNI	GGTCTC	1 cut(s)	865
BsrBI	CCGCTC	3 cut(s)	188, 222, 379
BsrFI	RCCGGY	6 cut(s)	314, 601, 778, 840, 1045, 1308
BsrI	ACTGG	1 cut(s)	142
BssAI	RCCGGY	6 cut(s)	314, 601, 778, 840, 1045, 1308
BssECI	CCNNGG	9 cut(s)	322, 358, 567, 583, 677, 820, 850, 896, 1103
BssMI	GATC	7 cut(s)	4, 24, 306, 756, 1020, 1191, 1288
BssNI	GRCGYC	4 cut(s)	327, 791, 1031, 1043
BssT1I	CCWWGG	1 cut(s)	677
Bst2UI	CCWGG	3 cut(s)	569, 578, 584
Bst4CI	ACNGT	8 cut(s)	85, 373, 654, 660, 943, 991, 1055, 1183
BstACI	GRCGYC	4 cut(s)	327, 791, 1031, 1043
BstBAI	YACGTR	3 cut(s)	888, 1237, 1267
BstC8I	GCNNGC	9 cut(s)	220, 241, 381, 390, 776, 827, 1208, 1306, 1310
BstDEI	CTNAG	6 cut(s)	189, 869, 965, 1146, 1292, 1340
BstDSI	CCRYGG	2 cut(s)	322, 896
BstF5I	GGATG	2 cut(s)	162, 1306
BstFNI	CGCG	9 cut(s)	324, 366, 728, 785, 834, 857, 998, 1085, 1256
BstH2I	RGCGCY	2 cut(s)	289, 330
BstHHI	GCGC	7 cut(s)	288, 329, 728, 834, 857, 927, 998
BstKTI	GATC	7 cut(s)	7, 27, 309, 759, 1023, 1194, 1291
BstMAI	GTCTC	4 cut(s)	30, 67, 865, 905
BstMBI	GATC	7 cut(s)	4, 24, 306, 756, 1020, 1191, 1288
BstMCI	CGRYCG	6 cut(s)	319, 364, 783, 1023, 1260, 1313
BstMWI	GCNNNNNNNGC	9 cut(s)	185, 215, 324, 333, 385, 389, 831, 1268, 1277
BstNI	CCWGG	3 cut(s)	569, 578, 584
BstNSI	RCATGY	1 cut(s)	1245
BstSFI	CTRYAG	1 cut(s)	1154
BstSLI	GKGCMC	1 cut(s)	14
BstUI	CGCG	9 cut(s)	324, 366, 728, 785, 834, 857, 998, 1085, 1256
BstV1I	GCAGC	9 cut(s)	610, 720, 841, 939, 948, 1077, 1137, 1140, 1243
BstV2I	GAAGAC	1 cut(s)	598
BstX2I	RGATCY	3 cut(s)	4, 24, 1288
BstXI	CCANNNNNNTGG	1 cut(s)	684
BstYI	RGATCY	3 cut(s)	4, 24, 1288
BstZI	CGGCCG	4 cut(s)	316, 361, 1257, 1310
BsuRI	GGCC	9 cut(s)	318, 339, 363, 512, 903, 980, 1102, 1259, 1312
BtgI	CCRYGG	2 cut(s)	322, 896
BtgZI	GCGATG	1 cut(s)	1298
BtrI	CACGTC	1 cut(s)	915
BtsCI	GGATG	2 cut(s)	162, 1306
BtsIMutI	CAGTG	1 cut(s)	656
BveI	ACCTGC	1 cut(s)	341
Cac8I	GCNNGC	9 cut(s)	220, 241, 381, 390, 776, 827, 1208, 1306, 1310
CaiI	CAGNNNCTG	1 cut(s)	1153
CciNI	GCGGCCGC	1 cut(s)	1257
CfoI	GCGC	7 cut(s)	288, 329, 728, 834, 857, 927, 998
Cfr10I	RCCGGY	6 cut(s)	314, 601, 778, 840, 1045, 1308
Cfr42I	CCGCGG	1 cut(s)	325
Cfr9I	CCCGGG	1 cut(s)	1103
CseI	GACGC	8 cut(s)	49, 355, 493, 780, 987, 1051, 1074, 1262
Csp6I	GTAC	3 cut(s)	20, 672, 949
CviAII	CATG	2 cut(s)	1242, 1297
CviQI	GTAC	3 cut(s)	20, 672, 949
DdeI	CTNAG	6 cut(s)	189, 869, 965, 1146, 1292, 1340
DinI	GGCGCC	1 cut(s)	328
DpnI	GATC	7 cut(s)	6, 26, 308, 758, 1022, 1193, 1290
DpnII	GATC	7 cut(s)	4, 24, 306, 756, 1020, 1191, 1288
DriI	GACNNNNNGTC	3 cut(s)	1030, 1035, 1078
EaeI	YGGCCR	5 cut(s)	316, 361, 978, 1257, 1310
EagI	CGGCCG	4 cut(s)	316, 361, 1257, 1310
Eam1105I	GACNNNNNGTC	3 cut(s)	1030, 1035, 1078
EciI	GGCGGA	4 cut(s)	139, 166, 172, 337
Ecl136II	GAGCTC	1 cut(s)	388
EclXI	CGGCCG	4 cut(s)	316, 361, 1257, 1310
Eco130I	CCWWGG	1 cut(s)	677
Eco24I	GRGCYC	1 cut(s)	390
Eco31I	GGTCTC	1 cut(s)	865
Eco47I	GGWCC	7 cut(s)	459, 465, 471, 477, 580, 843, 1080
Eco52I	CGGCCG	4 cut(s)	316, 361, 1257, 1310
Eco53kI	GAGCTC	1 cut(s)	388
Eco72I	CACGTG	2 cut(s)	888, 1237
Eco88I	CYCGRG	4 cut(s)	523, 554, 908, 1103
EcoICRI	GAGCTC	1 cut(s)	388
EcoO109I	RGGNCCY	1 cut(s)	477
EcoRII	CCWGG	3 cut(s)	567, 576, 582
EcoT14I	CCWWGG	1 cut(s)	677
EcoT38I	GRGCYC	1 cut(s)	390
EgeI	GGCGCC	1 cut(s)	328
EheI	GGCGCC	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	677
Esp3I	CGTCTC	2 cut(s)	67, 905
FaeI	CATG	2 cut(s)	1245, 1300
FaiI	YATR	5 cut(s)	644, 701, 1243, 1298, 1323
FaqI	GGGAC	3 cut(s)	140, 359, 388
FatI	CATG	2 cut(s)	1241, 1296
FauI	CCCGC	4 cut(s)	227, 384, 413, 1001
FblI	GTMKAC	2 cut(s)	417, 1178
FokI	GGATG	2 cut(s)	149, 1313
FriOI	GRGCYC	1 cut(s)	390
GlaI	GCGC	7 cut(s)	287, 328, 727, 833, 856, 926, 997
GsaI	CCCAGC	2 cut(s)	60, 294
GsuI	CTGGAG	1 cut(s)	941
HaeII	RGCGCY	2 cut(s)	289, 330
HaeIII	GGCC	9 cut(s)	318, 339, 363, 512, 903, 980, 1102, 1259, 1312
HgaI	GACGC	8 cut(s)	49, 355, 493, 780, 987, 1051, 1074, 1262
HhaI	GCGC	7 cut(s)	288, 329, 728, 834, 857, 927, 998
Hin1I	GRCGYC	4 cut(s)	327, 791, 1031, 1043
Hin1II	CATG	2 cut(s)	1245, 1300
Hin6I	GCGC	7 cut(s)	286, 327, 726, 832, 855, 925, 996
HinP1I	GCGC	7 cut(s)	286, 327, 726, 832, 855, 925, 996
HincII	GTYRAC	1 cut(s)	1179
HindII	GTYRAC	1 cut(s)	1179
HinfI	GANTC	8 cut(s)	173, 438, 528, 802, 865, 906, 973, 1036
HphI	GGTGA	5 cut(s)	118, 244, 361, 811, 1060
Hpy166II	GTNNAC	5 cut(s)	88, 418, 1017, 1051, 1179
Hpy188III	TCNNGA	5 cut(s)	304, 910, 1018, 1195, 1330
Hpy8I	GTNNAC	5 cut(s)	88, 418, 1017, 1051, 1179
HpyAV	CCTTC	4 cut(s)	85, 102, 817, 1327
HpyCH4III	ACNGT	8 cut(s)	85, 373, 654, 660, 943, 991, 1055, 1183
HpyCH4IV	ACGT	5 cut(s)	887, 914, 1031, 1236, 1266
HpyCH4V	TGCA	6 cut(s)	114, 615, 646, 1156, 1231, 1245
HpyF10VI	GCNNNNNNNGC	9 cut(s)	185, 215, 324, 333, 385, 389, 831, 1268, 1277
HpyF3I	CTNAG	6 cut(s)	189, 869, 965, 1146, 1292, 1340
HpySE526I	ACGT	5 cut(s)	887, 914, 1031, 1236, 1266
Hsp92I	GRCGYC	4 cut(s)	327, 791, 1031, 1043
Hsp92II	CATG	2 cut(s)	1245, 1300
HspAI	GCGC	7 cut(s)	286, 327, 726, 832, 855, 925, 996
KasI	GGCGCC	1 cut(s)	326
Kpn2I	TCCGGA	1 cut(s)	1329
KpnI	GGTACC	1 cut(s)	675
KroI	GCCGGC	1 cut(s)	1308
KroNI	GCCGGC	1 cut(s)	1310
KspI	CCGCGG	1 cut(s)	325
Kzo9I	GATC	7 cut(s)	4, 24, 306, 756, 1020, 1191, 1288
LmnI	GCTCC	7 cut(s)	227, 360, 718, 922, 938, 1332, 1336
Lsp1109I	GCAGC	9 cut(s)	610, 720, 841, 939, 948, 1077, 1137, 1140, 1243
LweI	GCATC	1 cut(s)	1291
MaeII	ACGT	5 cut(s)	887, 914, 1031, 1236, 1266
MaeIII	GTNAC	4 cut(s)	367, 654, 799, 1237
MalI	GATC	7 cut(s)	6, 26, 308, 758, 1022, 1193, 1290
MbiI	CCGCTC	3 cut(s)	188, 222, 379
MboI	GATC	7 cut(s)	4, 24, 306, 756, 1020, 1191, 1288
MboII	GAAGA	1 cut(s)	598
MflI	RGATCY	3 cut(s)	4, 24, 1288
MhlI	GDGCHC	2 cut(s)	14, 390
MlsI	TGGCCA	1 cut(s)	980
MluCI	AATT	2 cut(s)	617, 682
MluNI	TGGCCA	1 cut(s)	980
Mly113I	GGCGCC	1 cut(s)	327
MlyI	GAGTC	4 cut(s)	167, 796, 900, 1045
MmeI	TCCRAC	4 cut(s)	870, 960, 1101, 1204
Mox20I	TGGCCA	1 cut(s)	980
MroI	TCCGGA	1 cut(s)	1329
MroNI	GCCGGC	1 cut(s)	1308
MscI	TGGCCA	1 cut(s)	980
MseI	TTAA	1 cut(s)	500
MslI	CAYNNNNRTG	1 cut(s)	398
Msp20I	TGGCCA	1 cut(s)	980
MspA1I	CMGCKG	3 cut(s)	324, 930, 1150
MvaI	CCWGG	3 cut(s)	569, 578, 584
MvnI	CGCG	9 cut(s)	324, 366, 728, 785, 834, 857, 998, 1085, 1256
MwoI	GCNNNNNNNGC	9 cut(s)	185, 215, 324, 333, 385, 389, 831, 1268, 1277
NaeI	GCCGGC	1 cut(s)	1310
NarI	GGCGCC	1 cut(s)	327
NdeII	GATC	7 cut(s)	4, 24, 306, 756, 1020, 1191, 1288
NgoMIV	GCCGGC	1 cut(s)	1308
NlaIII	CATG	2 cut(s)	1245, 1300
NmeAIII	GCCGAG	2 cut(s)	339, 409
NmuCI	GTSAC	4 cut(s)	367, 654, 799, 1237
NotI	GCGGCCGC	1 cut(s)	1257
NspI	RCATGY	1 cut(s)	1245
OliI	CACNNNNGTG	1 cut(s)	398
PaeR7I	CTCGAG	1 cut(s)	908
PaqCI	CACCTGC	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	4 cut(s)	396, 552, 893, 1094
PdiI	GCCGGC	1 cut(s)	1310
PfeI	GAWTC	4 cut(s)	438, 528, 865, 973
Pfl23II	CGTACG	1 cut(s)	19
PflFI	GACNNNGTC	1 cut(s)	941
Ple19I	CGATCG	1 cut(s)	1023
PleI	GAGTC	4 cut(s)	167, 796, 900, 1044
PluTI	GGCGCC	1 cut(s)	330
PmaCI	CACGTG	2 cut(s)	888, 1237
PmlI	CACGTG	2 cut(s)	888, 1237
PpsI	GAGTC	4 cut(s)	167, 796, 900, 1044
Ppu21I	YACGTR	3 cut(s)	888, 1237, 1267
PpuMI	RGGWCCY	1 cut(s)	477
Psp124BI	GAGCTC	1 cut(s)	390
Psp5II	RGGWCCY	1 cut(s)	477
Psp6I	CCWGG	3 cut(s)	567, 576, 582
PspCI	CACGTG	2 cut(s)	888, 1237
PspFI	CCCAGC	2 cut(s)	56, 290
PspGI	CCWGG	3 cut(s)	567, 576, 582
PspLI	CGTACG	1 cut(s)	19
PspPPI	RGGWCCY	1 cut(s)	477
PstI	CTGCAG	1 cut(s)	1158
PstNI	CAGNNNCTG	1 cut(s)	1153
PsuI	RGATCY	3 cut(s)	4, 24, 1288
PsyI	GACNNNGTC	1 cut(s)	941
PvuI	CGATCG	1 cut(s)	1023
PvuII	CAGCTG	1 cut(s)	1150
RsaI	GTAC	3 cut(s)	21, 673, 950
RsaNI	GTAC	3 cut(s)	20, 672, 949
RseI	CAYNNNNRTG	1 cut(s)	398
SacI	GAGCTC	1 cut(s)	390
SacII	CCGCGG	1 cut(s)	325
SalI	GTCGAC	1 cut(s)	1177
SaqAI	TTAA	1 cut(s)	500
Sau3AI	GATC	7 cut(s)	4, 24, 306, 756, 1020, 1191, 1288
SchI	GAGTC	4 cut(s)	167, 796, 900, 1045
SduI	GDGCHC	2 cut(s)	14, 390
SfaNI	GCATC	1 cut(s)	1291
SfcI	CTRYAG	1 cut(s)	1154
SfoI	GGCGCC	1 cut(s)	328
Sfr274I	CTCGAG	1 cut(s)	908
Sfr303I	CCGCGG	1 cut(s)	325
SgrAI	CRCCGGYG	1 cut(s)	1045
SgrBI	CCGCGG	1 cut(s)	325
SgrDI	CGTCGACG	1 cut(s)	1177
SinI	GGWCC	7 cut(s)	459, 465, 471, 477, 580, 843, 1080
SlaI	CTCGAG	1 cut(s)	908
SmaI	CCCGGG	1 cut(s)	1105
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	2 cut(s)	47, 908
SmoI	CTYRAG	2 cut(s)	47, 908
Sse9I	AATT	2 cut(s)	617, 682
SspDI	GGCGCC	1 cut(s)	326
SstI	GAGCTC	1 cut(s)	390
StyI	CCWWGG	1 cut(s)	677
TaaI	ACNGT	8 cut(s)	85, 373, 654, 660, 943, 991, 1055, 1183
TaiI	ACGT	5 cut(s)	890, 917, 1034, 1239, 1269
TasI	AATT	2 cut(s)	617, 682
TfiI	GAWTC	4 cut(s)	438, 528, 865, 973
Tru1I	TTAA	1 cut(s)	500
Tru9I	TTAA	1 cut(s)	500
TscAI	CASTG	1 cut(s)	663
TseFI	GTSAC	4 cut(s)	367, 654, 799, 1237
TseI	GCWGC	9 cut(s)	598, 708, 829, 927, 961, 1065, 1150, 1153, 1231
Tsp45I	GTSAC	4 cut(s)	367, 654, 799, 1237
TspGWI	ACGGA	3 cut(s)	37, 561, 1262
TspMI	CCCGGG	1 cut(s)	1103
TspRI	CASTG	1 cut(s)	663
Tth111I	GACNNNGTC	1 cut(s)	941
VpaK11BI	GGWCC	7 cut(s)	459, 465, 471, 477, 580, 843, 1080
XapI	RAATTY	1 cut(s)	617
XceI	RCATGY	1 cut(s)	1245
XhoI	CTCGAG	1 cut(s)	908
XmaI	CCCGGG	1 cut(s)	1103
XmiI	GTMKAC	2 cut(s)	417, 1178
ZraI	GACGTC	1 cut(s)	1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.