Rh7BG416800

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000546
Physical Location & Seq
Forward (+)
47074258 .. 47075620
1363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG416800.1

Sequence Viewer

Length: 507 bp
ATGCTCAAATCACTTTCTATTATAGAGATGAATGGGGTGAAAGAAATCAATCATCAATTTTTCAGAGATGGCTTAGTTGATCAAGTATTCCCTGCATTTCCGAAACTTGAGATATTAGAAGTTGACATCATGTTCAATTTGAAAGAGTGGAGAGAAGTAAAATTAGGTGACTTACCATCCCTACTTAAACTCACAATGGACTCTTGCCCTGAACTTGACTGTCTTCCATCACTTTCTTGGCTAAAATCCCTCAAGCATTTGGAATTCAGGCGTTGTCCAAAGCTTCTGTCCTTGCCTTCTGATGGACTACCAACTTCACTTGAGTCTTTCATAGTAATAGATTGCCCTGAACTGAAAGAATGGTGCCGCAAGGCGGAAGGTGAAGATTGGAGCAAGATATCCAGTGTTCCCAGCATATGGTTTGATTGTGAAGAAGTAAGATCCAAGTCTCATTGTACACCTGGAACATCAGTAGAGATTTATGAGAATATGGAATTGGATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 ko04016 ko04075 ko04931 map04014 map04016 map04075 map04931
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

168

Amino Acids

19.31

Weight (kDa)

4.81

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000546)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica MD14G1049300.v1.1
rosa_chinensis RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata RLG00000001164 RLG00000013941
rosa_multiflora Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 363
AccB7I CCANNNNNTGG 1 cut(s) 417
AciI CCGC 2 cut(s) 367, 374
AclWI GGATC 1 cut(s) 435
AcsI RAATTY 1 cut(s) 263
AfaI GTAC 1 cut(s) 457
AfiI CCNNNNNNNGG 3 cut(s) 302, 373, 417
AgsI TTSAA 2 cut(s) 136, 142
AjnI CCWGG 1 cut(s) 460
AjuI GAANNNNNNNTTGG 1 cut(s) 479
AluBI AGCT 1 cut(s) 283
AluI AGCT 1 cut(s) 283
Alw26I GTCTC 1 cut(s) 453
AlwI GGATC 1 cut(s) 435
ApoI RAATTY 1 cut(s) 263
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
AsuHPI GGTGA 3 cut(s) 49, 179, 392
BanI GGYRCC 1 cut(s) 363
BbsI GAAGAC 1 cut(s) 215
BccI CCATC 5 cut(s) 62, 184, 235, 296, 494
BciT130I CCWGG 1 cut(s) 462
BclI TGATCA 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 453
BisI GCNGC 1 cut(s) 367
BlsI GCNGC 1 cut(s) 368
Bme1390I CCNGG 1 cut(s) 462
BmiI GGNNCC 1 cut(s) 365
BmrFI CCNGG 1 cut(s) 462
BpiI GAAGAC 1 cut(s) 215
BpuEI CTTGAG 3 cut(s) 128, 236, 341
Bsc4I CCNNNNNNNGG 3 cut(s) 302, 373, 417
Bse1I ACTGG 1 cut(s) 402
BseBI CCWGG 1 cut(s) 462
BseGI GGATG 2 cut(s) 176, 505
BseLI CCNNNNNNNGG 3 cut(s) 302, 373, 417
BseNI ACTGG 1 cut(s) 402
BseYI CCCAGC 1 cut(s) 410
BshNI GGYRCC 1 cut(s) 363
BslI CCNNNNNNNGG 3 cut(s) 302, 373, 417
BsmAI GTCTC 1 cut(s) 453
Bsp1407I TGTACA 1 cut(s) 455
Bsp143I GATC 2 cut(s) 79, 440
BspACI CCGC 2 cut(s) 367, 374
BspLI GGNNCC 1 cut(s) 365
BspPI GGATC 1 cut(s) 435
BspT107I GGYRCC 1 cut(s) 363
BsrGI TGTACA 1 cut(s) 455
BsrI ACTGG 1 cut(s) 402
BssMI GATC 2 cut(s) 79, 440
Bst2UI CCWGG 1 cut(s) 462
Bst4CI ACNGT 1 cut(s) 221
BstAUI TGTACA 1 cut(s) 455
BstDEI CTNAG 1 cut(s) 73
BstF5I GGATG 2 cut(s) 176, 505
BstKTI GATC 2 cut(s) 82, 443
BstMAI GTCTC 1 cut(s) 453
BstMBI GATC 2 cut(s) 79, 440
BstNI CCWGG 1 cut(s) 462
BstSCI CCNGG 1 cut(s) 460
BstV2I GAAGAC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 440
BstYI RGATCY 1 cut(s) 440
BtsCI GGATG 2 cut(s) 176, 505
BtsIMutI CAGTG 1 cut(s) 409
Csp6I GTAC 1 cut(s) 456
CviAII CATG 1 cut(s) 130
CviJI RGCY 3 cut(s) 72, 241, 283
CviKI_1 RGCY 3 cut(s) 72, 241, 283
CviQI GTAC 1 cut(s) 456
DdeI CTNAG 1 cut(s) 73
DpnI GATC 2 cut(s) 81, 442
DpnII GATC 2 cut(s) 79, 440
EciI GGCGGA 1 cut(s) 389
Eco32I GATATC 1 cut(s) 399
EcoRI GAATTC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 460
EcoRV GATATC 1 cut(s) 399
FaeI CATG 1 cut(s) 133
FaiI YATR 7 cut(s) 23, 131, 332, 416, 418, 483, 491
FatI CATG 1 cut(s) 129
FauNDI CATATG 1 cut(s) 416
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 367
FokI GGATG 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 367
GluI GCNGC 1 cut(s) 367
GsaI CCCAGC 1 cut(s) 414
Hin1II CATG 1 cut(s) 133
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 2 cut(s) 200, 323
HphI GGTGA 3 cut(s) 49, 179, 392
Hpy166II GTNNAC 2 cut(s) 124, 458
Hpy188I TCNGA 3 cut(s) 65, 102, 301
Hpy8I GTNNAC 2 cut(s) 124, 458
HpyAV CCTTC 2 cut(s) 306, 371
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4V TGCA 1 cut(s) 95
HpyF3I CTNAG 1 cut(s) 73
Hsp92II CATG 1 cut(s) 133
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 2 cut(s) 79, 440
LmnI GCTCC 1 cut(s) 390
LpnPI CCDG 8 cut(s) 105, 222, 253, 360, 415, 424, 447, 474
MaeIII GTNAC 1 cut(s) 167
MalI GATC 2 cut(s) 81, 442
MboI GATC 2 cut(s) 79, 440
MboII GAAGA 3 cut(s) 215, 395, 443
MflI RGATCY 1 cut(s) 440
MluCI AATT 5 cut(s) 56, 136, 161, 263, 494
MlyI GAGTC 2 cut(s) 194, 332
MnlI CCTC 1 cut(s) 260
MseI TTAA 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 462
MvaI CCWGG 1 cut(s) 462
NdeI CATATG 1 cut(s) 416
NdeII GATC 2 cut(s) 79, 440
NlaIII CATG 1 cut(s) 133
NlaIV GGNNCC 1 cut(s) 365
NmuCI GTSAC 1 cut(s) 167
PflMI CCANNNNNTGG 1 cut(s) 417
PkrI GCNGC 1 cut(s) 368
PleI GAGTC 2 cut(s) 194, 331
PpsI GAGTC 2 cut(s) 194, 331
Psp6I CCWGG 1 cut(s) 460
PspFI CCCAGC 1 cut(s) 410
PspGI CCWGG 1 cut(s) 460
PspN4I GGNNCC 1 cut(s) 365
PsuI RGATCY 1 cut(s) 440
RsaI GTAC 1 cut(s) 457
RsaNI GTAC 1 cut(s) 456
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 1 cut(s) 367
Sau3AI GATC 2 cut(s) 79, 440
SchI GAGTC 2 cut(s) 194, 332
ScrFI CCNGG 1 cut(s) 462
SetI ASST 4 cut(s) 169, 285, 382, 463
SmlI CTYRAG 3 cut(s) 107, 251, 320
SmoI CTYRAG 3 cut(s) 107, 251, 320
Sse9I AATT 5 cut(s) 56, 136, 161, 263, 494
SsiI CCGC 2 cut(s) 367, 374
StyD4I CCNGG 1 cut(s) 460
TaaI ACNGT 1 cut(s) 221
TasI AATT 5 cut(s) 56, 136, 161, 263, 494
TatI WGTACW 1 cut(s) 455
TauI GCSGC 1 cut(s) 369
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 1 cut(s) 409
TseFI GTSAC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 2 cut(s) 44, 319
TspRI CASTG 1 cut(s) 409
Van91I CCANNNNNTGG 1 cut(s) 417
XapI RAATTY 1 cut(s) 263
XcmI CCANNNNNNNNNTGG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.