Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000546

Physical Location & Seq

Genomic Coordinates Reverse (-)

4791203 .. 4793823

Gene Structure 2621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0038400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAAGGCGTTGAGTTGGTGGCTAATGCTGGTGGGTTCACTTAGGCTTGTCTCTGTTTGGTTCGGTTTCTTCAACATATGGGCTCTCCGTCTTGCTGTCTTCTCCAAATCCCCAATGACTGAAGTTCATGGAAGGACATTTGGTGTCTGGACTCTCCTTACTTGCACGCTCTGCTATCTTTGTGCCTTTAACCTTGACAACAAGCCACTCTACCTAGTTACCTTCCTATCATTCATCTATGCCCTTGGTCATTTCTTGACCGAGTACCTAATCTACCACACCATGGCCATTGCAAATCTATCAACTGTCGGCTTTTTTGCAGGCACATCGATTATATGGATGTTGTTGCAGTGGAATTCACATCAAGCTCAAGCTGCGCTGAAATCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

PP2C

Protein Analysis

130

Amino Acids

14.93

Weight (kDa)

8.91

Isoelectric Point (pI)

31.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Erg28	PF03694	4 - 112	5e-30	Erg28 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica	MD14G1049300.v1.1
rosa_chinensis	RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata	RLG00000001164 RLG00000013941
rosa_multiflora	Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii	Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa	Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha	Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana	Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	283
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	355
AcuI	CTGAAG	1 cut(s)	141
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	283
AgsI	TTSAA	1 cut(s)	73
AluBI	AGCT	2 cut(s)	368, 374
AluI	AGCT	2 cut(s)	368, 374
Alw26I	GTCTC	1 cut(s)	55
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	1 cut(s)	355
AspLEI	GCGC	1 cut(s)	379
BalI	TGGCCA	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	361
BcgI	CGANNNNNNTGC	2 cut(s)	309, 343
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	215
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
BpiI	GAAGAC	1 cut(s)	91
BpuEI	CTTGAG	1 cut(s)	354
Bsa29I	ATCGAT	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	244, 282
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse3DI	GCAATG	1 cut(s)	288
BseCI	ATCGAT	1 cut(s)	329
BseDI	CCNNGG	2 cut(s)	244, 282
BseGI	GGATG	1 cut(s)	345
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	361
BshFI	GGCC	1 cut(s)	287
BshVI	ATCGAT	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp19I	CCATGG	1 cut(s)	282
BspANI	GGCC	1 cut(s)	287
BspDI	ATCGAT	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	288
BssECI	CCNNGG	2 cut(s)	244, 282
BssT1I	CCWWGG	2 cut(s)	244, 282
Bst4CI	ACNGT	1 cut(s)	307
BstAPI	GCANNNNNTGC	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	167, 322
BstDEI	CTNAG	1 cut(s)	41
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	379
BstMAI	GTCTC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 374
BstV1I	GCAGC	1 cut(s)	361
BstV2I	GAAGAC	1 cut(s)	91
Bsu15I	ATCGAT	1 cut(s)	329
BsuRI	GGCC	1 cut(s)	287
BsuTUI	ATCGAT	1 cut(s)	329
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	345
BtsI	GCAGTG	1 cut(s)	356
BtsIMutI	CAGTG	1 cut(s)	356
Cac8I	GCNNGC	2 cut(s)	167, 322
CfoI	GCGC	1 cut(s)	379
ClaI	ATCGAT	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	2 cut(s)	128, 283
CviJI	RGCY	8 cut(s)	22, 46, 83, 205, 287, 312, 368, 374
CviKI_1	RGCY	8 cut(s)	22, 46, 83, 205, 287, 312, 368, 374
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	1 cut(s)	41
EaeI	YGGCCR	1 cut(s)	285
Eco130I	CCWWGG	2 cut(s)	244, 282
Eco24I	GRGCYC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	141
EcoRI	GAATTC	1 cut(s)	355
EcoT14I	CCWWGG	2 cut(s)	244, 282
EcoT38I	GRGCYC	1 cut(s)	85
ErhI	CCWWGG	2 cut(s)	244, 282
FaeI	CATG	2 cut(s)	131, 286
FaiI	YATR	7 cut(s)	77, 79, 129, 240, 284, 335, 337
FatI	CATG	2 cut(s)	127, 282
FauNDI	CATATG	1 cut(s)	77
Fnu4HI	GCNGC	1 cut(s)	375
FokI	GGATG	1 cut(s)	352
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	375
FspBI	CTAG	1 cut(s)	215
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	287
HhaI	GCGC	1 cut(s)	379
Hin1II	CATG	2 cut(s)	131, 286
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HinfI	GANTC	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	2 cut(s)	148, 256
Hpy8I	GTNNAC	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	126, 232
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4V	TGCA	4 cut(s)	165, 293, 320, 349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 374
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	131, 286
HspAI	GCGC	1 cut(s)	377
LpnPI	CCDG	3 cut(s)	14, 133, 306
Lsp1109I	GCAGC	1 cut(s)	361
MaeI	CTAG	1 cut(s)	215
MaeIII	GTNAC	1 cut(s)	217
MboII	GAAGA	2 cut(s)	61, 91
MhlI	GDGCHC	1 cut(s)	85
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	1 cut(s)	355
MluNI	TGGCCA	1 cut(s)	287
MlyI	GAGTC	1 cut(s)	145
Mox20I	TGGCCA	1 cut(s)	287
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	1 cut(s)	189
Msp20I	TGGCCA	1 cut(s)	287
MwoI	GCNNNNNNNGC	2 cut(s)	171, 374
NcoI	CCATGG	1 cut(s)	282
NdeI	CATATG	1 cut(s)	77
NlaIII	CATG	2 cut(s)	131, 286
PflMI	CCANNNNNTGG	1 cut(s)	283
PkrI	GCNGC	1 cut(s)	376
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	1 cut(s)	375
SchI	GAGTC	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	6 cut(s)	195, 216, 224, 270, 370, 376
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
Sse9I	AATT	1 cut(s)	355
SspMI	CTAG	1 cut(s)	215
StyI	CCWWGG	2 cut(s)	244, 282
TaaI	ACNGT	1 cut(s)	307
TaqI	TCGA	1 cut(s)	329
TaqII	GACCGA	1 cut(s)	275
TasI	AATT	1 cut(s)	355
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	1 cut(s)	356
TseI	GCWGC	1 cut(s)	374
TspDTI	ATGAA	3 cut(s)	17, 116, 223
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	356
Van91I	CCANNNNNTGG	1 cut(s)	283
XapI	RAATTY	1 cut(s)	355
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.