Rmu_sc0013813.1_g000001

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013813.1
OG0000546
Physical Location & Seq
Reverse (-)
2275 .. 3171
897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013813.1_g000001.1.cds

Sequence Viewer

Length: 897 bp
atgcacaagctaactgctctacgacatctcgatttcaatatcggtcaacagttgagtgacatgcctccacacttgggaagattgaatcatattcaaaccttgtcagcatttcttgttggtactcttgatgggcaccgcatccaagagctgaagaatttaaatgatcttacaggagcgctttgcattttaaatcttgaaaatgtgttgagtacgacagatgttaaggaagcatatctgactagcaaaaaacacctgcagaggttggatctcgaatggatttctctatttgctgaaaatacaaagctgcaagaggacatcattgattctcttcgacccccttccactcttgaagaattaaatatattatcttatagtgggacaaaacttccatcttggttgagccatcggtcatttgctgaccttattgtgattaccctcgtcaattgtgcatactgtgaactttttccatctcttggtcagttaccagcgctgaagtttctttctgttgtgaacatggatgccgtcaaagaaattgatcagacatttttcagaagtgcccatgaaccagttgatcaagcaatccaagcatttccaaaactcgagatactagaagttgacaccatgcctaatttgaaagagtggaaggaagtaaaagaaggtgatttgccatcacttcttcaactcaaaatggagtgctgtccacaacttgtcactcttccatcatttttacacctcaaatccttgaagtatttaaagctgattgaatgcccaaagcttgtgctatcggaccacagtaaactaccaacttcactagagtctatgttaataggagatagctgtgaactgaaaagttggtgccgcaacgggggagatcaagaattgcagctggaaagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 ko04016 ko04075 ko04931 map04014 map04016 map04075 map04931
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

298

Amino Acids

33.78

Weight (kDa)

5.49

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000546)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica MD14G1049300.v1.1
rosa_chinensis RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata RLG00000001164 RLG00000013941
rosa_multiflora Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 261
Acc36I ACCTGC 1 cut(s) 261
AccB1I GGYRCC 2 cut(s) 132, 855
AccB7I CCANNNNNTGG 1 cut(s) 473
AciI CCGC 2 cut(s) 136, 859
AclWI GGATC 1 cut(s) 273
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 2 cut(s) 170, 512
AfaI GTAC 2 cut(s) 121, 211
AfeI AGCGCT 2 cut(s) 177, 489
AfiI CCNNNNNNNGG 3 cut(s) 74, 473, 865
AgsI TTSAA 9 cut(s) 37, 85, 95, 197, 350, 634, 680, 745, 764
AluBI AGCT 7 cut(s) 10, 148, 304, 757, 775, 837, 886
AluI AGCT 7 cut(s) 10, 148, 304, 757, 775, 837, 886
AlwI GGATC 1 cut(s) 273
Ama87I CYCGRG 1 cut(s) 599
Aor51HI AGCGCT 2 cut(s) 177, 489
ApeKI GCWGC 2 cut(s) 304, 883
ApoI RAATTY 1 cut(s) 154
Asp700I GAANNNNTTC 1 cut(s) 462
AspLEI GCGC 2 cut(s) 178, 490
AspS9I GGNCC 1 cut(s) 787
AsuHPI GGTGA 1 cut(s) 671
AvaI CYCGRG 1 cut(s) 599
AvaII GGWCC 1 cut(s) 787
BaeGI GKGCMC 2 cut(s) 135, 559
BanI GGYRCC 2 cut(s) 132, 855
BbvI GCAGC 1 cut(s) 291
BccI CCATC 6 cut(s) 122, 397, 411, 475, 676, 727
BceAI ACGGC 1 cut(s) 506
BclI TGATCA 2 cut(s) 535, 571
BfaI CTAG 3 cut(s) 240, 608, 812
BfmI CTRYAG 1 cut(s) 254
BfoI RGCGCY 2 cut(s) 179, 491
BfuAI ACCTGC 1 cut(s) 261
BisI GCNGC 3 cut(s) 305, 859, 884
BlsI GCNGC 3 cut(s) 306, 860, 885
Bme18I GGWCC 1 cut(s) 787
BmeT110I CYCGRG 1 cut(s) 599
BmgT120I GGNCC 1 cut(s) 787
BmiI GGNNCC 2 cut(s) 134, 857
BmsI GCATC 2 cut(s) 147, 508
Bsc4I CCNNNNNNNGG 3 cut(s) 74, 473, 865
Bse1I ACTGG 1 cut(s) 566
BseGI GGATG 2 cut(s) 138, 523
BseLI CCNNNNNNNGG 3 cut(s) 74, 473, 865
BseNI ACTGG 1 cut(s) 566
BseSI GKGCMC 2 cut(s) 135, 559
BseXI GCAGC 1 cut(s) 291
BshNI GGYRCC 2 cut(s) 132, 855
BsiHKCI CYCGRG 1 cut(s) 599
BslFI GGGAC 1 cut(s) 391
BslI CCNNNNNNNGG 3 cut(s) 74, 473, 865
BsmFI GGGAC 1 cut(s) 391
BsmI GAATGC 1 cut(s) 770
BsoBI CYCGRG 1 cut(s) 599
Bsp1286I GDGCHC 2 cut(s) 135, 559
Bsp143I GATC 5 cut(s) 163, 265, 535, 571, 871
BspACI CCGC 2 cut(s) 136, 859
BspLI GGNNCC 2 cut(s) 134, 857
BspMAI CTGCAG 1 cut(s) 258
BspMI ACCTGC 1 cut(s) 261
BspPI GGATC 1 cut(s) 273
BspT107I GGYRCC 2 cut(s) 132, 855
BsrI ACTGG 1 cut(s) 566
BssMI GATC 5 cut(s) 163, 265, 535, 571, 871
Bst4CI ACNGT 3 cut(s) 51, 455, 794
Bst6I CTCTTC 2 cut(s) 333, 720
BstF5I GGATG 2 cut(s) 138, 523
BstH2I RGCGCY 2 cut(s) 179, 491
BstHHI GCGC 2 cut(s) 178, 490
BstKTI GATC 5 cut(s) 166, 268, 538, 574, 874
BstMBI GATC 5 cut(s) 163, 265, 535, 571, 871
BstMWI GCNNNNNNNGC 1 cut(s) 584
BstNSI RCATGY 1 cut(s) 64
BstSFI CTRYAG 1 cut(s) 254
BstSLI GKGCMC 2 cut(s) 135, 559
BstV1I GCAGC 1 cut(s) 291
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BtsCI GGATG 2 cut(s) 138, 523
BveI ACCTGC 1 cut(s) 261
CfoI GCGC 2 cut(s) 178, 490
Cfr13I GGNCC 1 cut(s) 787
Csp6I GTAC 2 cut(s) 120, 210
CviAII CATG 4 cut(s) 61, 514, 560, 622
CviJI RGCY 8 cut(s) 10, 148, 304, 402, 757, 775, 837, 886
CviKI_1 RGCY 8 cut(s) 10, 148, 304, 402, 757, 775, 837, 886
CviQI GTAC 2 cut(s) 120, 210
DpnI GATC 5 cut(s) 165, 267, 537, 573, 873
DpnII GATC 5 cut(s) 163, 265, 535, 571, 871
DraI TTTAAA 3 cut(s) 159, 189, 753
Eam1104I CTCTTC 2 cut(s) 333, 720
EarI CTCTTC 2 cut(s) 333, 720
Eco47I GGWCC 1 cut(s) 787
Eco47III AGCGCT 2 cut(s) 177, 489
Eco57I CTGAAG 2 cut(s) 170, 512
Eco88I CYCGRG 1 cut(s) 599
FaeI CATG 4 cut(s) 64, 517, 563, 625
FaqI GGGAC 1 cut(s) 391
FatI CATG 4 cut(s) 60, 513, 559, 621
FbaI TGATCA 2 cut(s) 535, 571
Fnu4HI GCNGC 3 cut(s) 305, 859, 884
FokI GGATG 2 cut(s) 125, 530
Fsp4HI GCNGC 3 cut(s) 305, 859, 884
FspBI CTAG 3 cut(s) 240, 608, 812
GlaI GCGC 2 cut(s) 177, 489
GluI GCNGC 3 cut(s) 305, 859, 884
HaeII RGCGCY 2 cut(s) 179, 491
HhaI GCGC 2 cut(s) 178, 490
Hin1II CATG 4 cut(s) 64, 517, 563, 625
Hin6I GCGC 2 cut(s) 176, 488
HinP1I GCGC 2 cut(s) 176, 488
HincII GTYRAC 2 cut(s) 47, 616
HindII GTYRAC 2 cut(s) 47, 616
HindIII AAGCTT 1 cut(s) 773
HinfI GANTC 3 cut(s) 85, 323, 815
HphI GGTGA 1 cut(s) 671
Hpy166II GTNNAC 7 cut(s) 47, 458, 511, 616, 701, 797, 842
Hpy188I TCNGA 4 cut(s) 237, 540, 551, 787
Hpy188III TCNNGA 7 cut(s) 29, 125, 194, 269, 347, 601, 875
Hpy8I GTNNAC 7 cut(s) 47, 458, 511, 616, 701, 797, 842
HpyAV CCTTC 3 cut(s) 348, 637, 650
HpyCH4III ACNGT 3 cut(s) 51, 455, 794
HpyCH4V TGCA 6 cut(s) 4, 183, 256, 307, 449, 883
HpyF10VI GCNNNNNNNGC 1 cut(s) 584
Hsp92II CATG 4 cut(s) 64, 517, 563, 625
HspAI GCGC 2 cut(s) 176, 488
Ksp22I TGATCA 2 cut(s) 535, 571
Kzo9I GATC 5 cut(s) 163, 265, 535, 571, 871
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 5 cut(s) 156, 266, 498, 579, 872
Lsp1109I GCAGC 1 cut(s) 291
LweI GCATC 2 cut(s) 147, 508
MaeI CTAG 3 cut(s) 240, 608, 812
MaeIII GTNAC 3 cut(s) 56, 480, 709
MalI GATC 5 cut(s) 165, 267, 537, 573, 873
MboI GATC 5 cut(s) 163, 265, 535, 571, 871
MboII GAAGA 6 cut(s) 90, 163, 320, 362, 668, 707
MfeI CAATTG 1 cut(s) 442
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 2 cut(s) 135, 559
MluCI AATT 6 cut(s) 154, 353, 442, 531, 628, 878
MlyI GAGTC 1 cut(s) 824
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 5 cut(s) 75, 252, 304, 446, 743
MroXI GAANNNNTTC 1 cut(s) 462
MseI TTAA 6 cut(s) 158, 188, 222, 356, 752, 824
MspA1I CMGCKG 1 cut(s) 886
MunI CAATTG 1 cut(s) 442
Mva1269I GAATGC 1 cut(s) 770
MwoI GCNNNNNNNGC 1 cut(s) 584
NdeII GATC 5 cut(s) 163, 265, 535, 571, 871
NlaIII CATG 4 cut(s) 64, 517, 563, 625
NlaIV GGNNCC 2 cut(s) 134, 857
NmuCI GTSAC 2 cut(s) 56, 709
NspI RCATGY 1 cut(s) 64
PaeR7I CTCGAG 1 cut(s) 599
PaqCI CACCTGC 1 cut(s) 261
PctI GAATGC 1 cut(s) 770
PdmI GAANNNNTTC 1 cut(s) 462
PfeI GAWTC 2 cut(s) 85, 323
PflMI CCANNNNNTGG 1 cut(s) 473
PkrI GCNGC 3 cut(s) 306, 860, 885
PleI GAGTC 1 cut(s) 823
PpsI GAGTC 1 cut(s) 823
PspN4I GGNNCC 2 cut(s) 134, 857
PspPI GGNCC 1 cut(s) 787
PstI CTGCAG 1 cut(s) 258
PsuI RGATCY 1 cut(s) 265
PvuII CAGCTG 1 cut(s) 886
RsaI GTAC 2 cut(s) 121, 211
RsaNI GTAC 2 cut(s) 120, 210
SaqAI TTAA 6 cut(s) 158, 188, 222, 356, 752, 824
SatI GCNGC 3 cut(s) 305, 859, 884
Sau3AI GATC 5 cut(s) 163, 265, 535, 571, 871
Sau96I GGNCC 1 cut(s) 787
SchI GAGTC 1 cut(s) 824
SduI GDGCHC 2 cut(s) 135, 559
SfaNI GCATC 2 cut(s) 147, 508
SfcI CTRYAG 1 cut(s) 254
Sfr274I CTCGAG 1 cut(s) 599
SinI GGWCC 1 cut(s) 787
SlaI CTCGAG 1 cut(s) 599
SmiI ATTTAAAT 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
Sse9I AATT 6 cut(s) 154, 353, 442, 531, 628, 878
SsiI CCGC 2 cut(s) 136, 859
SspMI CTAG 3 cut(s) 240, 608, 812
SwaI ATTTAAAT 1 cut(s) 159
TaaI ACNGT 3 cut(s) 51, 455, 794
TaqI TCGA 4 cut(s) 30, 270, 331, 600
TaqII GACCGA 2 cut(s) 32, 396
TasI AATT 6 cut(s) 154, 353, 442, 531, 628, 878
TauI GCSGC 1 cut(s) 861
TfiI GAWTC 2 cut(s) 85, 323
Tru1I TTAA 6 cut(s) 158, 188, 222, 356, 752, 824
Tru9I TTAA 6 cut(s) 158, 188, 222, 356, 752, 824
TseFI GTSAC 2 cut(s) 56, 709
TseI GCWGC 2 cut(s) 304, 883
Tsp45I GTSAC 2 cut(s) 56, 709
TspDTI ATGAA 1 cut(s) 576
Van91I CCANNNNNTGG 1 cut(s) 473
VpaK11BI GGWCC 1 cut(s) 787
XapI RAATTY 1 cut(s) 154
XceI RCATGY 1 cut(s) 64
XhoI CTCGAG 1 cut(s) 599
XmnI GAANNNNTTC 1 cut(s) 462
XspI CTAG 3 cut(s) 240, 608, 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.