Rmu_sc0003488.1_g000001

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003488.1
OG0000546
Physical Location & Seq
Forward (+)
9602 .. 10388
787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003488.1_g000001.1.cds

Sequence Viewer

Length: 585 bp
atgaacccacagcggccgccgccgccgccctatgtgttcctcagttccggaggttacgccatgggcaatctctacactgctctggttgaaaagggcatacctacaattcgagataatgaaaagctggagttgggatctgggcagagctcagaagagaaggaaaaaatgtttgagaagacgttgcttccagtactctgcacatcaattgaagaatcgaagcttgtgattgtcatcatttcaataaattatctgaattcgagctggtgcttggagcagcttgccaaggctgttgaatgcaacaaactaatactccctgttttcgatgatgtgcatccaagtgaactacgacttcaaaagggatcagttgcggaagctttctttaagcacgaaaaaggctttaaagacaacccagacaaggtgcgaaaatggagacgagttattaatggcgtagctgacttgactggatgggatttacaccatagagggttacgaattcaggaaacaagagttggttcaattgtggatagctcaaggtttttatatgggagagagtcccggagagacaatggaagatgccggcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

194

Amino Acids

22.08

Weight (kDa)

8.87

Isoelectric Point (pI)

51.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000546)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica MD14G1049300.v1.1
rosa_chinensis RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata RLG00000001164 RLG00000013941
rosa_multiflora Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 47
AciI CCGC 6 cut(s) 13, 17, 20, 23, 26, 368
AclWI GGATC 2 cut(s) 142, 367
AcoI YGGCCR 1 cut(s) 14
AcsI RAATTY 2 cut(s) 253, 492
AfaI GTAC 1 cut(s) 192
AfiI CCNNNNNNNGG 1 cut(s) 415
AgsI TTSAA 6 cut(s) 89, 209, 240, 293, 353, 516
AjuI GAANNNNNNNTTGG 2 cut(s) 492, 524
AluBI AGCT 8 cut(s) 124, 147, 220, 261, 277, 374, 452, 528
AluI AGCT 8 cut(s) 124, 147, 220, 261, 277, 374, 452, 528
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 2 cut(s) 424, 555
AlwI GGATC 2 cut(s) 142, 367
Aor13HI TCCGGA 1 cut(s) 47
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 274
ApoI RAATTY 2 cut(s) 253, 492
AseI ATTAAT 1 cut(s) 441
AsuC2I CCSGG 1 cut(s) 556
BanII GRGCYC 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 286
BccI CCATC 1 cut(s) 459
BcnI CCSGG 1 cut(s) 556
BcoDI GTCTC 2 cut(s) 424, 555
BisI GCNGC 6 cut(s) 14, 17, 20, 23, 26, 275
BlsI GCNGC 6 cut(s) 15, 18, 21, 24, 27, 276
BmcAI AGTACT 1 cut(s) 192
Bme1390I CCNGG 1 cut(s) 556
BmrFI CCNGG 1 cut(s) 556
BmsI GCATC 2 cut(s) 340, 563
BpiI GAAGAC 1 cut(s) 182
BpmI CTGGAG 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 514
BpuMI CCSGG 1 cut(s) 556
BsaBI GATNNNNATC 2 cut(s) 230, 330
BsaJI CCNNGG 2 cut(s) 60, 282
BsaWI WCCGGW 1 cut(s) 47
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 1 cut(s) 415
Bse118I RCCGGY 1 cut(s) 576
Bse1I ACTGG 2 cut(s) 188, 466
Bse8I GATNNNNATC 2 cut(s) 230, 330
BseAI TCCGGA 1 cut(s) 47
BseDI CCNNGG 2 cut(s) 60, 282
BseGI GGATG 2 cut(s) 331, 470
BseJI GATNNNNATC 2 cut(s) 230, 330
BseLI CCNNNNNNNGG 1 cut(s) 415
BseMII CTCAG 2 cut(s) 55, 162
BseNI ACTGG 2 cut(s) 188, 466
BseX3I CGGCCG 1 cut(s) 14
BseXI GCAGC 1 cut(s) 286
BsgI GTGCAG 1 cut(s) 181
Bsh1285I CGRYCG 1 cut(s) 17
BshFI GGCC 1 cut(s) 16
BsiEI CGRYCG 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 149
BsiSI CCGG 3 cut(s) 48, 556, 577
BslFI GGGAC 1 cut(s) 538
BslI CCNNNNNNNGG 1 cut(s) 415
BsmAI GTCTC 2 cut(s) 424, 555
BsmBI CGTCTC 1 cut(s) 424
BsmFI GGGAC 1 cut(s) 538
BsmI GAATGC 1 cut(s) 299
BsnI GGCC 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 149
Bsp13I TCCGGA 1 cut(s) 47
Bsp143I GATC 2 cut(s) 134, 359
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 6 cut(s) 13, 17, 20, 23, 26, 368
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 2 cut(s) 54, 161
BspEI TCCGGA 1 cut(s) 47
BspPI GGATC 2 cut(s) 142, 367
BsrFI RCCGGY 1 cut(s) 576
BsrI ACTGG 2 cut(s) 188, 466
BssAI RCCGGY 1 cut(s) 576
BssECI CCNNGG 2 cut(s) 60, 282
BssMI GATC 2 cut(s) 134, 359
BssT1I CCWWGG 2 cut(s) 60, 282
Bst6I CTCTTC 1 cut(s) 147
BstC8I GCNNGC 2 cut(s) 279, 578
BstDEI CTNAG 2 cut(s) 41, 148
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 2 cut(s) 331, 470
BstKTI GATC 2 cut(s) 137, 362
BstMAI GTCTC 2 cut(s) 424, 555
BstMBI GATC 2 cut(s) 134, 359
BstMCI CGRYCG 1 cut(s) 17
BstMWI GCNNNNNNNGC 3 cut(s) 19, 22, 25
BstSCI CCNGG 1 cut(s) 554
BstV1I GCAGC 1 cut(s) 286
BstV2I GAAGAC 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BstZI CGGCCG 1 cut(s) 14
BsuRI GGCC 1 cut(s) 16
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 2 cut(s) 331, 470
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 2 cut(s) 279, 578
CciNI GCGGCCGC 1 cut(s) 14
Cfr10I RCCGGY 1 cut(s) 576
Csp6I GTAC 1 cut(s) 191
CviAII CATG 1 cut(s) 61
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 2 cut(s) 41, 148
DpnI GATC 2 cut(s) 136, 361
DpnII GATC 2 cut(s) 134, 359
DraI TTTAAA 1 cut(s) 400
EaeI YGGCCR 1 cut(s) 14
EagI CGGCCG 1 cut(s) 14
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Ecl136II GAGCTC 1 cut(s) 147
EclXI CGGCCG 1 cut(s) 14
Eco130I CCWWGG 2 cut(s) 60, 282
Eco24I GRGCYC 1 cut(s) 149
Eco52I CGGCCG 1 cut(s) 14
Eco53kI GAGCTC 1 cut(s) 147
EcoICRI GAGCTC 1 cut(s) 147
EcoRI GAATTC 2 cut(s) 253, 492
EcoT14I CCWWGG 2 cut(s) 60, 282
EcoT38I GRGCYC 1 cut(s) 149
ErhI CCWWGG 2 cut(s) 60, 282
Esp3I CGTCTC 1 cut(s) 424
FaeI CATG 1 cut(s) 64
FaiI YATR 6 cut(s) 33, 62, 98, 480, 541, 543
FaqI GGGAC 1 cut(s) 538
FatI CATG 1 cut(s) 60
Fnu4HI GCNGC 6 cut(s) 14, 17, 20, 23, 26, 275
FokI GGATG 2 cut(s) 318, 477
FriOI GRGCYC 1 cut(s) 149
Fsp4HI GCNGC 6 cut(s) 14, 17, 20, 23, 26, 275
GluI GCNGC 6 cut(s) 14, 17, 20, 23, 26, 275
GsuI CTGGAG 1 cut(s) 146
HaeIII GGCC 1 cut(s) 16
HapII CCGG 3 cut(s) 48, 556, 577
Hin1II CATG 1 cut(s) 64
HindIII AAGCTT 2 cut(s) 218, 372
HinfI GANTC 2 cut(s) 212, 551
HpaII CCGG 3 cut(s) 48, 556, 577
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 2 cut(s) 151, 252
Hpy188III TCNNGA 3 cut(s) 48, 110, 497
Hpy8I GTNNAC 1 cut(s) 341
HpyAV CCTTC 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 179
HpyCH4V TGCA 3 cut(s) 198, 297, 331
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 22, 25
HpyF3I CTNAG 2 cut(s) 41, 148
HpySE526I ACGT 1 cut(s) 179
Hsp92II CATG 1 cut(s) 64
Kpn2I TCCGGA 1 cut(s) 47
KroI GCCGGC 1 cut(s) 576
KroNI GCCGGC 1 cut(s) 578
Kzo9I GATC 2 cut(s) 134, 359
LmnI GCTCC 1 cut(s) 271
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 2 cut(s) 340, 563
MaeII ACGT 1 cut(s) 179
MaeIII GTNAC 2 cut(s) 53, 486
MalI GATC 2 cut(s) 136, 361
MboI GATC 2 cut(s) 134, 359
MboII GAAGA 4 cut(s) 164, 187, 221, 582
MfeI CAATTG 2 cut(s) 204, 516
MflI RGATCY 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 6 cut(s) 105, 204, 244, 253, 492, 516
MlyI GAGTC 1 cut(s) 560
MnlI CCTC 3 cut(s) 44, 50, 476
MroI TCCGGA 1 cut(s) 47
MroNI GCCGGC 1 cut(s) 576
MseI TTAA 3 cut(s) 381, 399, 441
MslI CAYNNNNRTG 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 13
MspI CCGG 3 cut(s) 48, 556, 577
MspR9I CCNGG 1 cut(s) 556
MunI CAATTG 2 cut(s) 204, 516
Mva1269I GAATGC 1 cut(s) 299
MwoI GCNNNNNNNGC 3 cut(s) 19, 22, 25
NaeI GCCGGC 1 cut(s) 578
NciI CCSGG 1 cut(s) 556
NcoI CCATGG 1 cut(s) 60
NdeII GATC 2 cut(s) 134, 359
NgoMIV GCCGGC 1 cut(s) 576
NlaIII CATG 1 cut(s) 64
NotI GCGGCCGC 1 cut(s) 14
PctI GAATGC 1 cut(s) 299
PdiI GCCGGC 1 cut(s) 578
PfeI GAWTC 1 cut(s) 212
PfoI TCCNGGA 1 cut(s) 554
PkrI GCNGC 6 cut(s) 15, 18, 21, 24, 27, 276
PleI GAGTC 1 cut(s) 559
PpsI GAGTC 1 cut(s) 559
PshBI ATTAAT 1 cut(s) 441
Psp124BI GAGCTC 1 cut(s) 149
PsuI RGATCY 1 cut(s) 134
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
RseI CAYNNNNRTG 1 cut(s) 336
SacI GAGCTC 1 cut(s) 149
SaqAI TTAA 3 cut(s) 381, 399, 441
SatI GCNGC 6 cut(s) 14, 17, 20, 23, 26, 275
Sau3AI GATC 2 cut(s) 134, 359
ScaI AGTACT 1 cut(s) 192
SchI GAGTC 1 cut(s) 560
ScrFI CCNGG 1 cut(s) 556
SduI GDGCHC 1 cut(s) 149
SfaNI GCATC 2 cut(s) 340, 563
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 529
SmoI CTYRAG 1 cut(s) 529
Sse9I AATT 6 cut(s) 105, 204, 244, 253, 492, 516
SsiI CCGC 6 cut(s) 13, 17, 20, 23, 26, 368
SstI GAGCTC 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 554
StyI CCWWGG 2 cut(s) 60, 282
TaiI ACGT 1 cut(s) 182
TaqI TCGA 4 cut(s) 109, 215, 257, 321
TasI AATT 6 cut(s) 105, 204, 244, 253, 492, 516
TatI WGTACW 1 cut(s) 190
TauI GCSGC 5 cut(s) 16, 19, 22, 25, 28
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 3 cut(s) 381, 399, 441
Tru9I TTAA 3 cut(s) 381, 399, 441
TscAI CASTG 1 cut(s) 82
TseI GCWGC 1 cut(s) 274
TspDTI ATGAA 2 cut(s) 17, 132
TspRI CASTG 1 cut(s) 82
VspI ATTAAT 1 cut(s) 441
XapI RAATTY 2 cut(s) 253, 492
ZrmI AGTACT 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.