Rorug06G0037600

phosphatase 2c

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
4726673 .. 4727514
842 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0037600.1

Sequence Viewer

Length: 507 bp
ATGGAATTGTGTAAGATTTCATCAGTCCTGATTTCTCTCGTAGCCTTATCCCTGCTCCATTCCATTTTTGCGCAAGACTCGATCAAAGACTACCTGAACGGCCACAACTTTGCTCGAGCGGCGGTAGGTAACGGGCCCATGGTCTGGGATGATGAACTAGCGCGTTTTGCTCAAGACTATGCCCAAAAACACATTCATGACTGCCAACTTGTCCACTCCGGTTATAAATACGGTGAAAACCTTGCCATGAGTTGGGGTGAGATGTTTGGCTTAGATGCTGTGAGCATGTGGGTGGGGGAGAAGCCGAATTACGATTACAACTCGAATTCTTGCGTCGGTGGCGAATGTGGGCATTATTTGCAGGTCATTTGGAACACCTCGACTCATCTGGGGTGTGCCAAAGCAAGGTGCAACAATGGGGGTACTTGGATCGGGTGCAACTATAATCCCCCGCCAAGTGGGGATAGGCCTTATAATCCCCCGCCACGTGGGGATAGGCCTTACTAA

Protein Analysis

168

Amino Acids

18.65

Weight (kDa)

5.92

Isoelectric Point (pI)

27.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 32 - 148 7.2e-17 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000546)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica MD14G1049300.v1.1
rosa_chinensis RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata RLG00000001164 RLG00000013941
rosa_multiflora Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 225, 474
Acc16I TGCGCA 1 cut(s) 72
Acc36I ACCTGC 1 cut(s) 352
AccB7I CCANNNNNTGG 2 cut(s) 144, 252
AccBSI CCGCTC 1 cut(s) 119
AccII CGCG 1 cut(s) 163
AciI CCGC 4 cut(s) 119, 122, 452, 482
AclWI GGATC 1 cut(s) 437
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 1 cut(s) 325
AcvI CACGTG 1 cut(s) 488
AfaI GTAC 1 cut(s) 424
AfiI CCNNNNNNNGG 5 cut(s) 144, 252, 405, 458, 488
AjuI GAANNNNNNNTTGG 2 cut(s) 177, 209
AlwI GGATC 1 cut(s) 437
Ama87I CYCGRG 1 cut(s) 114
AoxI GGCC 4 cut(s) 100, 134, 467, 497
ApaI GGGCCC 1 cut(s) 138
ApoI RAATTY 1 cut(s) 325
AspLEI GCGC 2 cut(s) 73, 163
AspS9I GGNCC 2 cut(s) 134, 135
AsuHPI GGTGA 2 cut(s) 245, 269
AvaI CYCGRG 1 cut(s) 114
BaeGI GKGCMC 1 cut(s) 138
BanII GRGCYC 1 cut(s) 138
BarI GAAGNNNNNNTAC 2 cut(s) 293, 325
BbrPI CACGTG 1 cut(s) 488
BceAI ACGGC 1 cut(s) 115
BfaI CTAG 1 cut(s) 158
BfuAI ACCTGC 1 cut(s) 352
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
BmeT110I CYCGRG 1 cut(s) 114
BmgT120I GGNCC 2 cut(s) 134, 135
BmiI GGNNCC 1 cut(s) 136
BmsI GCATC 1 cut(s) 265
BpuEI CTTGAG 1 cut(s) 156
BsaAI YACGTR 1 cut(s) 488
BsaJI CCNNGG 1 cut(s) 138
BsaWI WCCGGW 1 cut(s) 218
Bsc4I CCNNNNNNNGG 5 cut(s) 144, 252, 405, 458, 488
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 5 cut(s) 144, 252, 405, 458, 488
BseSI GKGCMC 1 cut(s) 138
Bsh1236I CGCG 1 cut(s) 163
BshFI GGCC 4 cut(s) 102, 136, 469, 499
BsiHKCI CYCGRG 1 cut(s) 114
BsiSI CCGG 1 cut(s) 219
BslI CCNNNNNNNGG 5 cut(s) 144, 252, 405, 458, 488
BsnI GGCC 4 cut(s) 102, 136, 469, 499
BsoBI CYCGRG 1 cut(s) 114
Bsp120I GGGCCC 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 2 cut(s) 81, 429
Bsp19I CCATGG 1 cut(s) 138
BspACI CCGC 4 cut(s) 119, 122, 452, 482
BspANI GGCC 4 cut(s) 102, 136, 469, 499
BspFNI CGCG 1 cut(s) 163
BspHI TCATGA 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 136
BspMI ACCTGC 1 cut(s) 352
BspPI GGATC 1 cut(s) 437
BsrBI CCGCTC 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 2 cut(s) 81, 429
BssT1I CCWWGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 233
BstAPI GCANNNNNTGC 1 cut(s) 358
BstBAI YACGTR 1 cut(s) 488
BstDEI CTNAG 1 cut(s) 271
BstDSI CCRYGG 1 cut(s) 138
BstF5I GGATG 1 cut(s) 154
BstFNI CGCG 1 cut(s) 163
BstHHI GCGC 2 cut(s) 73, 163
BstKTI GATC 2 cut(s) 84, 432
BstMBI GATC 2 cut(s) 81, 429
BstMWI GCNNNNNNNGC 4 cut(s) 119, 167, 339, 358
BstNSI RCATGY 1 cut(s) 289
BstSLI GKGCMC 1 cut(s) 138
BstUI CGCG 1 cut(s) 163
BsuRI GGCC 4 cut(s) 102, 136, 469, 499
BtgI CCRYGG 1 cut(s) 138
BtsCI GGATG 1 cut(s) 154
BveI ACCTGC 1 cut(s) 352
CciI TCATGA 1 cut(s) 196
CfoI GCGC 2 cut(s) 73, 163
Cfr13I GGNCC 2 cut(s) 134, 135
CseI GACGC 1 cut(s) 322
Csp6I GTAC 1 cut(s) 423
CviAII CATG 4 cut(s) 139, 197, 247, 286
CviJI RGCY 7 cut(s) 44, 102, 136, 270, 304, 469, 499
CviKI_1 RGCY 7 cut(s) 44, 102, 136, 270, 304, 469, 499
CviQI GTAC 1 cut(s) 423
DdeI CTNAG 1 cut(s) 271
DpnI GATC 2 cut(s) 83, 431
DpnII GATC 2 cut(s) 81, 429
EaeI YGGCCR 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 138
Eco147I AGGCCT 2 cut(s) 469, 499
Eco24I GRGCYC 1 cut(s) 138
Eco72I CACGTG 1 cut(s) 488
Eco88I CYCGRG 1 cut(s) 114
EcoRI GAATTC 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 4 cut(s) 142, 200, 250, 289
FaiI YATR 8 cut(s) 140, 180, 198, 225, 248, 287, 444, 474
FatI CATG 4 cut(s) 138, 196, 246, 285
FauI CCCGC 2 cut(s) 459, 489
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 1 cut(s) 158
FspI TGCGCA 1 cut(s) 72
GlaI GCGC 2 cut(s) 72, 162
GluI GCNGC 1 cut(s) 120
HaeIII GGCC 4 cut(s) 102, 136, 469, 499
HapII CCGG 1 cut(s) 219
HgaI GACGC 1 cut(s) 322
HhaI GCGC 2 cut(s) 73, 163
Hin1II CATG 4 cut(s) 142, 200, 250, 289
Hin6I GCGC 2 cut(s) 71, 161
HinP1I GCGC 2 cut(s) 71, 161
HinfI GANTC 2 cut(s) 77, 382
HpaII CCGG 1 cut(s) 219
HphI GGTGA 2 cut(s) 245, 269
Hpy166II GTNNAC 1 cut(s) 214
Hpy188III TCNNGA 3 cut(s) 28, 173, 197
Hpy8I GTNNAC 1 cut(s) 214
Hpy99I CGWCG 1 cut(s) 338
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4IV ACGT 1 cut(s) 487
HpyCH4V TGCA 3 cut(s) 361, 411, 438
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 167, 339, 358
HpyF3I CTNAG 1 cut(s) 271
HpySE526I ACGT 1 cut(s) 487
Hsp92II CATG 4 cut(s) 142, 200, 250, 289
HspAI GCGC 2 cut(s) 71, 161
Kzo9I GATC 2 cut(s) 81, 429
LmnI GCTCC 1 cut(s) 60
LpnPI CCDG 7 cut(s) 41, 65, 107, 130, 232, 347, 374
LweI GCATC 1 cut(s) 265
MaeI CTAG 1 cut(s) 158
MaeII ACGT 1 cut(s) 487
MaeIII GTNAC 1 cut(s) 128
MalI GATC 2 cut(s) 83, 431
MbiI CCGCTC 1 cut(s) 119
MboI GATC 2 cut(s) 81, 429
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 3 cut(s) 5, 307, 325
MlyI GAGTC 2 cut(s) 71, 376
MnlI CCTC 1 cut(s) 388
MslI CAYNNNNRTG 2 cut(s) 195, 290
MspI CCGG 1 cut(s) 219
MvnI CGCG 1 cut(s) 163
MwoI GCNNNNNNNGC 4 cut(s) 119, 167, 339, 358
NcoI CCATGG 1 cut(s) 138
NdeII GATC 2 cut(s) 81, 429
NlaIII CATG 4 cut(s) 142, 200, 250, 289
NlaIV GGNNCC 1 cut(s) 136
NsbI TGCGCA 1 cut(s) 72
NspI RCATGY 1 cut(s) 289
PaeR7I CTCGAG 1 cut(s) 114
PagI TCATGA 1 cut(s) 196
PceI AGGCCT 2 cut(s) 469, 499
PflMI CCANNNNNTGG 2 cut(s) 144, 252
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 2 cut(s) 71, 376
PmaCI CACGTG 1 cut(s) 488
PmlI CACGTG 1 cut(s) 488
PpsI GAGTC 2 cut(s) 71, 376
Ppu21I YACGTR 1 cut(s) 488
PsiI TTATAA 2 cut(s) 225, 474
PspCI CACGTG 1 cut(s) 488
PspN4I GGNNCC 1 cut(s) 136
PspOMI GGGCCC 1 cut(s) 134
PspPI GGNCC 2 cut(s) 134, 135
PspXI VCTCGAGB 1 cut(s) 114
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
RseI CAYNNNNRTG 2 cut(s) 195, 290
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 2 cut(s) 81, 429
Sau96I GGNCC 2 cut(s) 134, 135
SchI GAGTC 2 cut(s) 71, 376
SduI GDGCHC 1 cut(s) 138
SetI ASST 7 cut(s) 96, 130, 243, 366, 380, 410, 490
SfaNI GCATC 1 cut(s) 265
Sfr274I CTCGAG 1 cut(s) 114
SlaI CTCGAG 1 cut(s) 114
SmiMI CAYNNNNRTG 2 cut(s) 195, 290
SmlI CTYRAG 2 cut(s) 114, 171
SmoI CTYRAG 2 cut(s) 114, 171
Sse9I AATT 3 cut(s) 5, 307, 325
SseBI AGGCCT 2 cut(s) 469, 499
SsiI CCGC 4 cut(s) 119, 122, 452, 482
SspMI CTAG 1 cut(s) 158
StuI AGGCCT 2 cut(s) 469, 499
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 233
TaiI ACGT 1 cut(s) 490
TaqI TCGA 4 cut(s) 80, 115, 323, 380
TasI AATT 3 cut(s) 5, 307, 325
TauI GCSGC 1 cut(s) 122
TspDTI ATGAA 3 cut(s) 9, 168, 185
Van91I CCANNNNNTGG 2 cut(s) 144, 252
XapI RAATTY 1 cut(s) 325
XceI RCATGY 1 cut(s) 289
XhoI CTCGAG 1 cut(s) 114
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.