Rmu_sc0004529.1_g000036

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004529.1
OG0000546
Physical Location & Seq
Forward (+)
158421 .. 160209
1789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004529.1_g000036.1.cds

Sequence Viewer

Length: 717 bp
atggtcgtccgtagtcttggccctaaaagggatccgtttcgtcctagggatgatgacgaagacgtgttaatagcgaaaaggttggatctccaatggatttctctatttgctgaaaatacaaagctacaagaggacatcattgattctcttcgacccccttccactctcaaagaattaaatatattatcttatagtgggacaaaacttccatcttggttgagccatcagtcatttgctgaccttattgtgattaccctcgacaattgtgcatactgtgaactttttccatctcttggtcagttaccagcgctgaagtttctttctgttgtaaagatggatgccgtcaaagaaattgatcagacatttttcagaagtgcccatgaaccagtttctcgagcattcccagcatttccaaaactcgagatactagaagttgacaccatgcctaatttgaaagagtggaaggaagtaaaagaaggtgatttgccttcactacttcaactcaaaatggagtgctgtccacaacttgtcactcttccatcatttttgcacctcaaatccttgaagtatttaaagctgattgaatgctcaaagcttgtgctatcggaccacagtaaactaccaacttcactagagtctttgataataggagattgctgtgaactgaaaagctggtgccgcaaggagggagatcaagaattgcagctggaaagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 ko04016 ko04075 ko04931 map04014 map04016 map04075 map04931
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

238

Amino Acids

27.21

Weight (kDa)

5.37

Isoelectric Point (pI)

55.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000546)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_4g25760 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700 FvH4_5g34700
malus_domestica MD14G1049300.v1.1
rosa_chinensis RchiOBHm_Chr4g0433201 RchiOBHm_Chr6g0255111 RchiOBHm_Chr7g0235301 RchiOBHm_Chr7g0235351 RchiOBHm_Chr7g0235361 RchiOBHm_Chr7g0235381
rosa_laevigata RLG00000001164 RLG00000013941
rosa_multiflora Rmu_co8331033.1_g000001 Rmu_co8369635.1_g000001 Rmu_sc0000957.1_g000010 Rmu_sc0003304.1_g000033 Rmu_sc0003304.1_g000041 Rmu_sc0003488.1_g000001 Rmu_sc0004529.1_g000036 Rmu_sc0004637.1_g000013 Rmu_sc0004657.1_g000070 Rmu_sc0004657.1_g000076 Rmu_sc0006578.1_g000004 Rmu_sc0011027.1_g000008 Rmu_sc0011027.1_g000010 Rmu_sc0013813.1_g000001 Rmu_sc0014112.1_g000001 Rmu_sc0014112.1_g000002 Rmu_sc0014112.1_g000004 Rmu_ssc0000011.1_g000040 Rmu_ssc0000295.1_g000011
rosa_roxburghii Rroxscaffold_2G00103040 Rroxscaffold_3G00226100 Rroxscaffold_3G00226120 Rroxscaffold_5G00374710 Rroxscaffold_5G00374720 Rroxscaffold_7G00200160 Rroxscaffold_7G00200190
rosa_rugosa Rorug05G0474400 Rorug05G0474400 Rorug06G0037400 Rorug06G0037500 Rorug06G0037600 Rorug06G0038300 Rorug06G0038300 Rorug06G0038400 Rorug06G0038500 Rorug07G0289800 Rorug07G0289900 Rorug07G0290000 Rorug07G0290000
rosa_samantha Rh4AG320500 Rh4AG320700 Rh4AG321100 Rh4DG324200 Rh4DG324700 Rh6BG067500 Rh6CG066600 Rh6CG066700 Rh6DG063600 Rh6DG063700 Rh6DG147600 Rh7AG444800 Rh7AG445000 Rh7BG416700 Rh7BG416800 Rh7CG465200 Rh7CG465300 Rh7CG465700 Rh7DG433600 Rh7DG433800
rosa_wichuraiana Rw0G008730 Rw0G008770 Rw4G027830 Rw7G036940 Rw7G036980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 675
AccB7I CCANNNNNTGG 1 cut(s) 293
AciI CCGC 1 cut(s) 679
AclWI GGATC 3 cut(s) 26, 39, 93
AcuI CTGAAG 1 cut(s) 332
AfeI AGCGCT 1 cut(s) 309
AfiI CCNNNNNNNGG 3 cut(s) 28, 293, 685
AflIII ACRYGT 1 cut(s) 63
AgsI TTSAA 4 cut(s) 454, 500, 565, 584
AjiI CACGTC 1 cut(s) 64
AluBI AGCT 5 cut(s) 124, 577, 595, 672, 706
AluI AGCT 5 cut(s) 124, 577, 595, 672, 706
AlwI GGATC 3 cut(s) 26, 39, 93
Ama87I CYCGRG 2 cut(s) 393, 419
Aor51HI AGCGCT 1 cut(s) 309
AoxI GGCC 1 cut(s) 19
ApeKI GCWGC 1 cut(s) 703
Asp700I GAANNNNTTC 1 cut(s) 282
AspA2I CCTAGG 1 cut(s) 44
AspLEI GCGC 1 cut(s) 310
AspS9I GGNCC 2 cut(s) 20, 607
AsuHPI GGTGA 1 cut(s) 491
AvaI CYCGRG 2 cut(s) 393, 419
AvaII GGWCC 1 cut(s) 607
AvrII CCTAGG 1 cut(s) 44
BaeGI GKGCMC 1 cut(s) 379
BamHI GGATCC 1 cut(s) 31
BanI GGYRCC 1 cut(s) 675
BbsI GAAGAC 1 cut(s) 66
BccI CCATC 5 cut(s) 217, 231, 295, 328, 547
BceAI ACGGC 1 cut(s) 326
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BclI TGATCA 1 cut(s) 355
BfaI CTAG 3 cut(s) 45, 428, 632
BfoI RGCGCY 1 cut(s) 311
BisI GCNGC 2 cut(s) 679, 704
BlnI CCTAGG 1 cut(s) 44
BlsI GCNGC 2 cut(s) 680, 705
Bme18I GGWCC 1 cut(s) 607
BmeT110I CYCGRG 2 cut(s) 393, 419
BmgBI CACGTC 1 cut(s) 64
BmgT120I GGNCC 2 cut(s) 20, 607
BmiI GGNNCC 2 cut(s) 33, 677
BmsI GCATC 1 cut(s) 328
BpiI GAAGAC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 44
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 293, 685
Bse1I ACTGG 1 cut(s) 386
BseDI CCNNGG 1 cut(s) 44
BseGI GGATG 2 cut(s) 55, 343
BseLI CCNNNNNNNGG 3 cut(s) 28, 293, 685
BseNI ACTGG 1 cut(s) 386
BseSI GKGCMC 1 cut(s) 379
BseYI CCCAGC 1 cut(s) 403
BshFI GGCC 1 cut(s) 21
BshNI GGYRCC 1 cut(s) 675
BsiHKCI CYCGRG 2 cut(s) 393, 419
BslFI GGGAC 1 cut(s) 211
BslI CCNNNNNNNGG 3 cut(s) 28, 293, 685
BsmFI GGGAC 1 cut(s) 211
BsmI GAATGC 2 cut(s) 398, 590
BsnI GGCC 1 cut(s) 21
BsoBI CYCGRG 2 cut(s) 393, 419
Bsp1286I GDGCHC 1 cut(s) 379
Bsp143I GATC 4 cut(s) 31, 85, 355, 691
BspACI CCGC 1 cut(s) 679
BspANI GGCC 1 cut(s) 21
BspLI GGNNCC 2 cut(s) 33, 677
BspPI GGATC 3 cut(s) 26, 39, 93
BspT107I GGYRCC 1 cut(s) 675
BsrI ACTGG 1 cut(s) 386
BssECI CCNNGG 1 cut(s) 44
BssMI GATC 4 cut(s) 31, 85, 355, 691
BssT1I CCWWGG 1 cut(s) 44
Bst4CI ACNGT 2 cut(s) 275, 614
Bst6I CTCTTC 2 cut(s) 153, 540
BstF5I GGATG 2 cut(s) 55, 343
BstH2I RGCGCY 1 cut(s) 311
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 4 cut(s) 34, 88, 358, 694
BstMBI GATC 4 cut(s) 31, 85, 355, 691
BstMWI GCNNNNNNNGC 2 cut(s) 404, 678
BstSLI GKGCMC 1 cut(s) 379
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 2 cut(s) 31, 85
BstYI RGATCY 2 cut(s) 31, 85
BsuRI GGCC 1 cut(s) 21
BtrI CACGTC 1 cut(s) 64
BtsCI GGATG 2 cut(s) 55, 343
CfoI GCGC 1 cut(s) 310
Cfr13I GGNCC 2 cut(s) 20, 607
CviAII CATG 2 cut(s) 380, 442
CviJI RGCY 7 cut(s) 21, 124, 222, 577, 595, 672, 706
CviKI_1 RGCY 7 cut(s) 21, 124, 222, 577, 595, 672, 706
DpnI GATC 4 cut(s) 33, 87, 357, 693
DpnII GATC 4 cut(s) 31, 85, 355, 691
DraI TTTAAA 1 cut(s) 573
Eam1104I CTCTTC 2 cut(s) 153, 540
EarI CTCTTC 2 cut(s) 153, 540
Eco130I CCWWGG 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 607
Eco47III AGCGCT 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 332
Eco88I CYCGRG 2 cut(s) 393, 419
EcoT14I CCWWGG 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 44
FaeI CATG 2 cut(s) 383, 445
FaiI YATR 5 cut(s) 182, 192, 271, 381, 443
FaqI GGGAC 1 cut(s) 211
FatI CATG 2 cut(s) 379, 441
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 2 cut(s) 679, 704
FokI GGATG 2 cut(s) 62, 350
Fsp4HI GCNGC 2 cut(s) 679, 704
FspBI CTAG 3 cut(s) 45, 428, 632
GlaI GCGC 1 cut(s) 309
GluI GCNGC 2 cut(s) 679, 704
GsaI CCCAGC 1 cut(s) 407
HaeII RGCGCY 1 cut(s) 311
HaeIII GGCC 1 cut(s) 21
HhaI GCGC 1 cut(s) 310
Hin1II CATG 2 cut(s) 383, 445
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 2 cut(s) 143, 635
HphI GGTGA 1 cut(s) 491
Hpy166II GTNNAC 5 cut(s) 278, 436, 521, 617, 662
Hpy188I TCNGA 3 cut(s) 360, 371, 607
Hpy188III TCNNGA 3 cut(s) 393, 421, 695
Hpy8I GTNNAC 5 cut(s) 278, 436, 521, 617, 662
HpyAV CCTTC 4 cut(s) 168, 457, 470, 498
HpyCH4III ACNGT 2 cut(s) 275, 614
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 3 cut(s) 269, 550, 703
HpyF10VI GCNNNNNNNGC 2 cut(s) 404, 678
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 2 cut(s) 383, 445
HspAI GCGC 1 cut(s) 308
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 4 cut(s) 31, 85, 355, 691
LpnPI CCDG 5 cut(s) 318, 399, 417, 658, 692
LweI GCATC 1 cut(s) 328
MaeI CTAG 3 cut(s) 45, 428, 632
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 2 cut(s) 300, 529
MalI GATC 4 cut(s) 33, 87, 357, 693
MboI GATC 4 cut(s) 31, 85, 355, 691
MboII GAAGA 3 cut(s) 71, 140, 527
MfeI CAATTG 1 cut(s) 262
MflI RGATCY 2 cut(s) 31, 85
MhlI GDGCHC 1 cut(s) 379
MluCI AATT 5 cut(s) 173, 262, 351, 448, 698
MlyI GAGTC 1 cut(s) 644
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 4 cut(s) 124, 266, 563, 679
MroXI GAANNNNTTC 1 cut(s) 282
MseI TTAA 3 cut(s) 68, 176, 572
MspA1I CMGCKG 1 cut(s) 706
MunI CAATTG 1 cut(s) 262
Mva1269I GAATGC 2 cut(s) 398, 590
MwoI GCNNNNNNNGC 2 cut(s) 404, 678
NdeII GATC 4 cut(s) 31, 85, 355, 691
NlaIII CATG 2 cut(s) 383, 445
NlaIV GGNNCC 2 cut(s) 33, 677
NmuCI GTSAC 1 cut(s) 529
PaeR7I CTCGAG 2 cut(s) 393, 419
PctI GAATGC 2 cut(s) 398, 590
PdmI GAANNNNTTC 1 cut(s) 282
PfeI GAWTC 1 cut(s) 143
PflMI CCANNNNNTGG 1 cut(s) 293
PkrI GCNGC 2 cut(s) 680, 705
PleI GAGTC 1 cut(s) 643
PpsI GAGTC 1 cut(s) 643
PspFI CCCAGC 1 cut(s) 403
PspN4I GGNNCC 2 cut(s) 33, 677
PspPI GGNCC 2 cut(s) 20, 607
PsuI RGATCY 2 cut(s) 31, 85
PvuII CAGCTG 1 cut(s) 706
SaqAI TTAA 3 cut(s) 68, 176, 572
SatI GCNGC 2 cut(s) 679, 704
Sau3AI GATC 4 cut(s) 31, 85, 355, 691
Sau96I GGNCC 2 cut(s) 20, 607
SchI GAGTC 1 cut(s) 644
SduI GDGCHC 1 cut(s) 379
SfaNI GCATC 1 cut(s) 328
Sfr274I CTCGAG 2 cut(s) 393, 419
SinI GGWCC 1 cut(s) 607
SlaI CTCGAG 2 cut(s) 393, 419
SmlI CTYRAG 2 cut(s) 393, 419
SmoI CTYRAG 2 cut(s) 393, 419
Sse9I AATT 5 cut(s) 173, 262, 351, 448, 698
SsiI CCGC 1 cut(s) 679
SspMI CTAG 3 cut(s) 45, 428, 632
StyI CCWWGG 1 cut(s) 44
TaaI ACNGT 2 cut(s) 275, 614
TaiI ACGT 1 cut(s) 66
TaqI TCGA 4 cut(s) 151, 258, 394, 420
TasI AATT 5 cut(s) 173, 262, 351, 448, 698
TauI GCSGC 1 cut(s) 681
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 3 cut(s) 68, 176, 572
Tru9I TTAA 3 cut(s) 68, 176, 572
TseFI GTSAC 1 cut(s) 529
TseI GCWGC 1 cut(s) 703
Tsp45I GTSAC 1 cut(s) 529
TspDTI ATGAA 1 cut(s) 396
TspGWI ACGGA 1 cut(s) 24
Van91I CCANNNNNTGG 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 607
XhoI CTCGAG 2 cut(s) 393, 419
XmaJI CCTAGG 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 282
XspI CTAG 3 cut(s) 45, 428, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.