AT1G05810

RAB GTPase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012896
Physical Location & Seq
Forward (+)
1748259 .. 1749526
1268 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G05810.1

Sequence Viewer

Length: 657 bp
ATGTCTTCGGACGACGAAGGAAGAGAGGAGTATCTCTTCAAGATTGTTGTTATCGGCGACTCTGCCGTCGGTAAATCTAATCTTCTATCTCGTTACGCACGTAACGAGTTCAGCGCTAACTCCAAGGCGACGATCGGAGTCGAGTTTCAGACGCAGAGCATGGAGATTGAAGGTAAAGAGGTCAAGGCTCAGATTTGGGACACTGCTGGTCAGGAGCGTTTCCGTGCCGTCACTTCCGCTTATTACCGTGGCGCTGTCGGTGCCCTCGTCGTTTACGACATTACCCGCCGCACCACTTTCGAAAGCGTTGGACGTTGGCTCGATGAGCTTAAGATCCATTCGGATACGACGGTGGCGAGAATGCTGGTGGGGAACAAGTGTGATCTAGAAAACATAAGAGCAGTGAGCGTGGAGGAAGGAAAGGCTCTAGCCGAAGAGGAAGGACTCTTCTTTGTGGAAACATCGGCTCTTGATTCGACTAATGTTAAAACAGCTTTCGAGATGGTGATACTTGATATCTACAATAACGTGAGCCGTAAGCAACTCAACTCAGATACTTATAAAGACGAACTCACCGTGAATCGGGTAAGTCTTGTTAAGGATGATAACTCTGCCTCCAAACAAAGCTCTGGTTTCTCTTGTTGTTCTTCCACTTGA

Protein Analysis

218

Amino Acids

24.21

Weight (kDa)

4.89

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 13 - 166 6.3e-14 ADP-ribosylation factor family
Ras PF00071 14 - 174 4.5e-62 Ras family
Roc PF08477 14 - 128 1.2e-33 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012896)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05810 AT1G05810 AT2G31680 AT2G43130
fragaria_vesca FvH4_4g11760
malus_domestica MD04G1033200.v1.1 MD13G1276500.v1.1
prunus_persica Prupe.1G181200_v2.0.a1
pyrus_communis pycom13g28930
rosa_laevigata RLG00000008596
rosa_multiflora Rmu_sc0006766.1_g000004 Rmu_sc0017774.1_g000002
rosa_roxburghii Rroxscaffold_5G00353490
rosa_rugosa Rorug04G0089700
rosa_samantha Rh4AG153400 Rh4BG151500 Rh4CG161900 Rh4DG146800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 561
AasI GACNNNNNNGTC 1 cut(s) 65
AccB1I GGYRCC 1 cut(s) 260
AciI CCGC 3 cut(s) 237, 286, 289
AclWI GGATC 1 cut(s) 328
AfeI AGCGCT 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 582
AflII CTTAAG 1 cut(s) 329
AgsI TTSAA 2 cut(s) 40, 170
AluBI AGCT 3 cut(s) 328, 494, 627
AluI AGCT 3 cut(s) 328, 494, 627
AlwI GGATC 1 cut(s) 328
Aor51HI AGCGCT 1 cut(s) 115
AspLEI GCGC 2 cut(s) 116, 254
AsuHPI GGTGA 2 cut(s) 517, 565
AsuII TTCGAA 1 cut(s) 300
BaeGI GKGCMC 1 cut(s) 265
BaeI ACNNNNGTAYC 2 cut(s) 336, 369
BanI GGYRCC 1 cut(s) 260
BccI CCATC 1 cut(s) 496
BceAI ACGGC 3 cut(s) 50, 212, 519
BcgI CGANNNNNNTGC 2 cut(s) 280, 314
BciVI GTATCC 1 cut(s) 337
BfaI CTAG 2 cut(s) 386, 428
BfoI RGCGCY 2 cut(s) 117, 255
BfrI CTTAAG 1 cut(s) 329
BfuI GTATCC 1 cut(s) 337
BisI GCNGC 1 cut(s) 289
BlsI GCNGC 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 262
Bpu14I TTCGAA 1 cut(s) 300
BsaAI YACGTR 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 123, 247
BsaXI ACNNNNNCTCC 2 cut(s) 599, 629
Bsc4I CCNNNNNNNGG 1 cut(s) 582
BseDI CCNNGG 2 cut(s) 123, 247
BseGI GGATG 1 cut(s) 607
BseLI CCNNNNNNNGG 1 cut(s) 582
BseMII CTCAG 2 cut(s) 203, 564
BseRI GAGGAG 1 cut(s) 41
BseSI GKGCMC 1 cut(s) 265
Bsh1285I CGRYCG 1 cut(s) 135
BshNI GGYRCC 1 cut(s) 260
BsiEI CGRYCG 1 cut(s) 135
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 582
BsmFI GGGAC 1 cut(s) 212
BsmI GAATGC 1 cut(s) 366
Bsp119I TTCGAA 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 265
Bsp143I GATC 3 cut(s) 132, 333, 382
BspACI CCGC 3 cut(s) 237, 286, 289
BspCNI CTCAG 2 cut(s) 202, 563
BspLI GGNNCC 1 cut(s) 262
BspPI GGATC 1 cut(s) 328
BspT104I TTCGAA 1 cut(s) 300
BspT107I GGYRCC 1 cut(s) 260
BspTI CTTAAG 1 cut(s) 329
BssECI CCNNGG 2 cut(s) 123, 247
BssMI GATC 3 cut(s) 132, 333, 382
BssT1I CCWWGG 1 cut(s) 123
Bst4CI ACNGT 3 cut(s) 248, 352, 577
Bst6I CTCTTC 4 cut(s) 16, 41, 429, 452
BstAFI CTTAAG 1 cut(s) 329
BstBAI YACGTR 1 cut(s) 101
BstBI TTCGAA 1 cut(s) 300
BstDEI CTNAG 2 cut(s) 189, 550
BstDSI CCRYGG 1 cut(s) 247
BstF5I GGATG 1 cut(s) 607
BstH2I RGCGCY 2 cut(s) 117, 255
BstHHI GCGC 2 cut(s) 116, 254
BstKTI GATC 3 cut(s) 135, 336, 385
BstMBI GATC 3 cut(s) 132, 333, 382
BstMCI CGRYCG 1 cut(s) 135
BstMWI GCNNNNNNNGC 2 cut(s) 260, 325
BstSLI GKGCMC 1 cut(s) 265
BstX2I RGATCY 1 cut(s) 333
BstYI RGATCY 1 cut(s) 333
BsuI GTATCC 1 cut(s) 337
BtgI CCRYGG 1 cut(s) 247
BtsCI GGATG 1 cut(s) 607
BtsI GCAGTG 2 cut(s) 201, 408
BtsIMutI CAGTG 2 cut(s) 201, 408
CfoI GCGC 2 cut(s) 116, 254
CseI GACGC 1 cut(s) 160
CviAII CATG 1 cut(s) 160
CviJI RGCY 9 cut(s) 188, 319, 328, 425, 431, 467, 494, 534, 627
CviKI_1 RGCY 9 cut(s) 188, 319, 328, 425, 431, 467, 494, 534, 627
DdeI CTNAG 2 cut(s) 189, 550
DpnI GATC 3 cut(s) 134, 335, 384
DpnII GATC 3 cut(s) 132, 333, 382
DrdI GACNNNNNNGTC 1 cut(s) 65
DseDI GACNNNNNNGTC 1 cut(s) 65
Eam1104I CTCTTC 4 cut(s) 16, 41, 429, 452
EarI CTCTTC 4 cut(s) 16, 41, 429, 452
Eco130I CCWWGG 1 cut(s) 123
Eco32I GATATC 1 cut(s) 517
Eco47III AGCGCT 1 cut(s) 115
EcoRV GATATC 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 1 cut(s) 163
FaiI YATR 3 cut(s) 161, 395, 561
FaqI GGGAC 1 cut(s) 212
FatI CATG 1 cut(s) 159
FauI CCCGC 1 cut(s) 293
Fnu4HI GCNGC 1 cut(s) 289
FokI GGATG 1 cut(s) 614
Fsp4HI GCNGC 1 cut(s) 289
FspBI CTAG 2 cut(s) 386, 428
GlaI GCGC 2 cut(s) 115, 253
GluI GCNGC 1 cut(s) 289
HaeII RGCGCY 2 cut(s) 117, 255
HgaI GACGC 1 cut(s) 160
HhaI GCGC 2 cut(s) 116, 254
Hin1II CATG 1 cut(s) 163
Hin6I GCGC 2 cut(s) 114, 252
HinP1I GCGC 2 cut(s) 114, 252
HinfI GANTC 5 cut(s) 59, 138, 444, 473, 580
HphI GGTGA 2 cut(s) 517, 565
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 6 cut(s) 10, 137, 150, 192, 343, 553
Hpy188III TCNNGA 5 cut(s) 40, 212, 386, 470, 499
Hpy8I GTNNAC 1 cut(s) 274
Hpy99I CGWCG 5 cut(s) 17, 71, 133, 272, 352
HpyAV CCTTC 4 cut(s) 11, 164, 410, 434
HpyCH4III ACNGT 3 cut(s) 248, 352, 577
HpyCH4IV ACGT 3 cut(s) 100, 313, 528
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 325
HpyF3I CTNAG 2 cut(s) 189, 550
HpySE526I ACGT 3 cut(s) 100, 313, 528
Hsp92II CATG 1 cut(s) 163
HspAI GCGC 2 cut(s) 114, 252
Kzo9I GATC 3 cut(s) 132, 333, 382
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 4 cut(s) 192, 197, 350, 615
MaeI CTAG 2 cut(s) 386, 428
MaeII ACGT 3 cut(s) 100, 313, 528
MaeIII GTNAC 3 cut(s) 92, 101, 229
MalI GATC 3 cut(s) 134, 335, 384
MboI GATC 3 cut(s) 132, 333, 382
MboII GAAGA 6 cut(s) 28, 33, 74, 439, 446, 639
MflI RGATCY 1 cut(s) 333
MhlI GDGCHC 1 cut(s) 265
MlyI GAGTC 3 cut(s) 53, 147, 438
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 6 cut(s) 19, 172, 275, 406, 430, 625
MseI TTAA 3 cut(s) 330, 486, 597
MspCI CTTAAG 1 cut(s) 329
Mva1269I GAATGC 1 cut(s) 366
MwoI GCNNNNNNNGC 2 cut(s) 260, 325
NdeII GATC 3 cut(s) 132, 333, 382
NlaIII CATG 1 cut(s) 163
NlaIV GGNNCC 1 cut(s) 262
NmuCI GTSAC 1 cut(s) 229
NspV TTCGAA 1 cut(s) 300
PcsI WCGNNNNNNNCGW 6 cut(s) 97, 102, 264, 273, 353, 573
PctI GAATGC 1 cut(s) 366
PfeI GAWTC 2 cut(s) 473, 580
PkrI GCNGC 1 cut(s) 290
Ple19I CGATCG 1 cut(s) 135
PleI GAGTC 3 cut(s) 53, 146, 438
PpsI GAGTC 3 cut(s) 53, 146, 438
Ppu21I YACGTR 1 cut(s) 101
PsiI TTATAA 1 cut(s) 561
PspN4I GGNNCC 1 cut(s) 262
PsuI RGATCY 1 cut(s) 333
PvuI CGATCG 1 cut(s) 135
SaqAI TTAA 3 cut(s) 330, 486, 597
SatI GCNGC 1 cut(s) 289
Sau3AI GATC 3 cut(s) 132, 333, 382
SchI GAGTC 3 cut(s) 53, 147, 438
SduI GDGCHC 1 cut(s) 265
SetI ASST 8 cut(s) 103, 175, 183, 316, 330, 496, 531, 629
SfuI TTCGAA 1 cut(s) 300
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SsiI CCGC 3 cut(s) 237, 286, 289
SspMI CTAG 2 cut(s) 386, 428
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 3 cut(s) 248, 352, 577
TaiI ACGT 3 cut(s) 103, 316, 531
TaqI TCGA 5 cut(s) 141, 300, 321, 476, 498
TauI GCSGC 1 cut(s) 291
TfiI GAWTC 2 cut(s) 473, 580
Tru1I TTAA 3 cut(s) 330, 486, 597
Tru9I TTAA 3 cut(s) 330, 486, 597
TscAI CASTG 2 cut(s) 208, 408
TseFI GTSAC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 229
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 2 cut(s) 208, 408
Vha464I CTTAAG 1 cut(s) 329
XbaI TCTAGA 1 cut(s) 385
XspI CTAG 2 cut(s) 386, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.