Rorug04G0089700

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012896
Physical Location & Seq
Reverse (-)
13904708 .. 13917509
12802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0089700.1

Sequence Viewer

Length: 396 bp
ATGGTCAAGGATGAGAAGACCCTCCTCATTGGTGCGAAGCCAGTCGCCGTCTTTGGGCTCAGAAACCTAGAGGAGATCCCATGGAGTCGTATGGTGCTGATATTGTCCACTGCAATGTTAAAAGACGCTGCTGCTCACTTAAAGGGGCAAGAGGCAAGGAGAGAAAGAATGACTTTGTCGGGTACGATACGCTTGGAAGAACTTGTGATTTTAATGCCACATGCTTTAAGGAAACAACTAGTTGATGATTGTGAATCAGTTACTCATCTGGGCAAGCTTGTTAAACTTCCCCGAACTCTAAATGTTGATGACATACTGAAGAAGTATCTAGAATACAGATCAAACAGCGATGATTTGCAACAAGAACCAATTATCAAAATTTTCCAGCTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

131

Amino Acids

15.02

Weight (kDa)

8.73

Isoelectric Point (pI)

37.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRG PF05712 66 - 119 4.4e-13 MRG
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012896)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05810 AT1G05810 AT2G31680 AT2G43130
fragaria_vesca FvH4_4g11760
malus_domestica MD04G1033200.v1.1 MD13G1276500.v1.1
prunus_persica Prupe.1G181200_v2.0.a1
pyrus_communis pycom13g28930
rosa_laevigata RLG00000008596
rosa_multiflora Rmu_sc0006766.1_g000004 Rmu_sc0017774.1_g000002
rosa_roxburghii Rroxscaffold_5G00353490
rosa_rugosa Rorug04G0089700
rosa_samantha Rh4AG153400 Rh4BG151500 Rh4CG161900 Rh4DG146800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 70
AcsI RAATTY 1 cut(s) 378
AcuI CTGAAG 1 cut(s) 338
AfaI GTAC 1 cut(s) 184
AfiI CCNNNNNNNGG 1 cut(s) 54
AhlI ACTAGT 1 cut(s) 238
AluBI AGCT 2 cut(s) 277, 388
AluI AGCT 2 cut(s) 277, 388
AlwI GGATC 1 cut(s) 70
ApeKI GCWGC 2 cut(s) 128, 131
ApoI RAATTY 1 cut(s) 378
BanII GRGCYC 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 23
BbvI GCAGC 2 cut(s) 115, 118
BceAI ACGGC 1 cut(s) 32
BcuI ACTAGT 1 cut(s) 238
BfaI CTAG 3 cut(s) 68, 239, 329
BisI GCNGC 2 cut(s) 129, 132
BlsI GCNGC 2 cut(s) 130, 133
BpiI GAAGAC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 80
Bsc4I CCNNNNNNNGG 1 cut(s) 54
Bse1I ACTGG 1 cut(s) 41
Bse3DI GCAATG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 1 cut(s) 16
BseLI CCNNNNNNNGG 1 cut(s) 54
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 73
BseNI ACTGG 1 cut(s) 41
BseRI GAGGAG 2 cut(s) 14, 86
BseXI GCAGC 2 cut(s) 115, 118
BslI CCNNNNNNNGG 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 2 cut(s) 75, 338
Bsp19I CCATGG 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 72
BspPI GGATC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 120
BsrI ACTGG 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 2 cut(s) 75, 338
BssT1I CCWWGG 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 275
BstDEI CTNAG 1 cut(s) 59
BstDSI CCRYGG 1 cut(s) 80
BstF5I GGATG 1 cut(s) 16
BstKTI GATC 2 cut(s) 78, 341
BstMBI GATC 2 cut(s) 75, 338
BstNSI RCATGY 1 cut(s) 224
BstV1I GCAGC 2 cut(s) 115, 118
BstV2I GAAGAC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 75
BstYI RGATCY 1 cut(s) 75
BtgI CCRYGG 1 cut(s) 80
BtgZI GCGATG 1 cut(s) 363
BtsCI GGATG 1 cut(s) 16
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 275
CseI GACGC 1 cut(s) 134
Csp6I GTAC 1 cut(s) 183
CviAII CATG 2 cut(s) 81, 221
CviJI RGCY 4 cut(s) 40, 58, 277, 388
CviKI_1 RGCY 4 cut(s) 40, 58, 277, 388
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 1 cut(s) 59
DpnI GATC 2 cut(s) 77, 340
DpnII GATC 2 cut(s) 75, 338
Eco130I CCWWGG 1 cut(s) 80
Eco24I GRGCYC 1 cut(s) 60
Eco57I CTGAAG 1 cut(s) 338
EcoT14I CCWWGG 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 80
FaeI CATG 2 cut(s) 84, 224
FaiI YATR 4 cut(s) 82, 92, 222, 314
FalI AAGNNNNNCTT 2 cut(s) 157, 189
FatI CATG 2 cut(s) 80, 220
Fnu4HI GCNGC 2 cut(s) 129, 132
FokI GGATG 1 cut(s) 23
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 2 cut(s) 129, 132
FspBI CTAG 3 cut(s) 68, 239, 329
GluI GCNGC 2 cut(s) 129, 132
HgaI GACGC 1 cut(s) 134
Hin1II CATG 2 cut(s) 84, 224
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 2 cut(s) 85, 254
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 1 cut(s) 62
Hpy188III TCNNGA 1 cut(s) 329
Hpy8I GTNNAC 1 cut(s) 108
HpyCH4V TGCA 2 cut(s) 113, 358
HpyF3I CTNAG 1 cut(s) 59
Hsp92II CATG 2 cut(s) 84, 224
Kzo9I GATC 2 cut(s) 75, 338
LpnPI CCDG 2 cut(s) 54, 254
Lsp1109I GCAGC 2 cut(s) 115, 118
MaeI CTAG 3 cut(s) 68, 239, 329
MaeIII GTNAC 1 cut(s) 259
MalI GATC 2 cut(s) 77, 340
MboI GATC 2 cut(s) 75, 338
MboII GAAGA 3 cut(s) 28, 209, 331
MflI RGATCY 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 2 cut(s) 369, 378
MlyI GAGTC 1 cut(s) 94
MnlI CCTC 4 cut(s) 32, 35, 64, 145
MseI TTAA 5 cut(s) 119, 140, 212, 227, 282
MslI CAYNNNNRTG 1 cut(s) 113
MspA1I CMGCKG 1 cut(s) 388
NcoI CCATGG 1 cut(s) 80
NdeII GATC 2 cut(s) 75, 338
NlaIII CATG 2 cut(s) 84, 224
NspI RCATGY 1 cut(s) 224
PfeI GAWTC 1 cut(s) 254
PflFI GACNNNGTC 1 cut(s) 175
PkrI GCNGC 2 cut(s) 130, 133
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
PsuI RGATCY 1 cut(s) 75
PsyI GACNNNGTC 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 388
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 5 cut(s) 119, 140, 212, 227, 282
SatI GCNGC 2 cut(s) 129, 132
Sau3AI GATC 2 cut(s) 75, 338
SchI GAGTC 1 cut(s) 94
SduI GDGCHC 1 cut(s) 60
SetI ASST 3 cut(s) 69, 279, 390
SmiMI CAYNNNNRTG 1 cut(s) 113
SpeI ACTAGT 1 cut(s) 238
Sse9I AATT 2 cut(s) 369, 378
SspMI CTAG 3 cut(s) 68, 239, 329
StyI CCWWGG 1 cut(s) 80
TasI AATT 2 cut(s) 369, 378
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 5 cut(s) 119, 140, 212, 227, 282
Tru9I TTAA 5 cut(s) 119, 140, 212, 227, 282
TscAI CASTG 1 cut(s) 115
TseI GCWGC 2 cut(s) 128, 131
TspRI CASTG 1 cut(s) 115
Tth111I GACNNNGTC 1 cut(s) 175
XapI RAATTY 1 cut(s) 378
XbaI TCTAGA 1 cut(s) 328
XceI RCATGY 1 cut(s) 224
XspI CTAG 3 cut(s) 68, 239, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.