Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012896

Physical Location & Seq

Genomic Coordinates Reverse (-)

17929607 .. 17931027

Gene Structure 1421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G43130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTCAGACGACGACGAGAGAGGCGAAGAGTACCTCTTCAAGATTGTTATCATCGGTGATTCCGCCGTCGGCAAATCCAATCTCCTCACTCGCTACGCCCGTAACGAGTTCAATCCCAATTCCAAAGCCACTATCGGCGTCGAGTTTCAGACTCAGAGCATGCTCATCGACGGCAAAGAGGTCAAAGCTCAGATTTGGGATACCGCCGGTCAGGAACGCTTCCGCGCCGTTACATCTGCTTATTACCGTGGCGCCGTTGGAGCCCTCGTCGTCTACGATATCACTCGTAGCTCCACTTTCGAAAACGTCGGTCGCTGGCTCGATGAGCTCAACACTCATTCTGATACAACAGTAGCAAAAATGCTTATTGGGAACAAATGTGATCTCGAGAGCATAAGAGCGGTGAGTGTTGAGGAAGGCAAGAGTCTTGCTGAGTCTGAAGGTTTGTTTTTCATGGAGACCTCTGCGTTGGACTCGACCAATGTAAAGACGGCTTTCGAGATGGTTATTCGGGAGATCTATAGCAACATTAGTCGAAAGCAATTGAACTCTGATTCTTACAAAGAGGAGCTGACTGTGAATCGTGTTAGCTTGGTTAAGAACGAGAACGAAGGGACAAAGACATTCTCTTGCTGTTCGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005798 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006891 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0012505 GO:0016020 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031410 GO:0031982 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0048219 GO:0050896 GO:0051179 GO:0051234 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098791 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

214

Amino Acids

23.98

Weight (kDa)

4.98

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	13 - 171	7.1e-14	ADP-ribosylation factor family
Ras	PF00071	14 - 174	3.2e-63	Ras family
Roc	PF08477	14 - 128	3.6e-34	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05810 AT1G05810 AT2G31680 AT2G43130
fragaria_vesca	FvH4_4g11760
malus_domestica	MD04G1033200.v1.1 MD13G1276500.v1.1
prunus_persica	Prupe.1G181200_v2.0.a1
pyrus_communis	pycom13g28930
rosa_laevigata	RLG00000008596
rosa_multiflora	Rmu_sc0006766.1_g000004 Rmu_sc0017774.1_g000002
rosa_roxburghii	Rroxscaffold_5G00353490
rosa_rugosa	Rorug04G0089700
rosa_samantha	Rh4AG153400 Rh4BG151500 Rh4CG161900 Rh4DG146800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	251
AccBSI	CCGCTC	1 cut(s)	401
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	1 cut(s)	225
AciI	CCGC	4 cut(s)	63, 204, 223, 401
AcuI	CTGAAG	1 cut(s)	459
AcyI	GRCGYC	2 cut(s)	138, 252
AfaI	GTAC	1 cut(s)	32
AgsI	TTSAA	3 cut(s)	40, 112, 547
AluBI	AGCT	5 cut(s)	188, 291, 328, 571, 591
AluI	AGCT	5 cut(s)	188, 291, 328, 571, 591
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	1 cut(s)	452
Ama87I	CYCGRG	1 cut(s)	386
AspLEI	GCGC	2 cut(s)	227, 254
AsuHPI	GGTGA	2 cut(s)	68, 415
AsuII	TTCGAA	1 cut(s)	300
AvaI	CYCGRG	1 cut(s)	386
BaeI	ACNNNNGTAYC	2 cut(s)	336, 369
BanI	GGYRCC	1 cut(s)	251
BanII	GRGCYC	2 cut(s)	265, 330
Bbv12I	GWGCWC	1 cut(s)	330
BccI	CCATC	1 cut(s)	496
BceAI	ACGGC	5 cut(s)	50, 187, 212, 239, 507
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BciVI	GTATCC	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	452
BfmI	CTRYAG	1 cut(s)	520
BfoI	RGCGCY	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	193
BglII	AGATCT	1 cut(s)	516
BmeT110I	CYCGRG	1 cut(s)	386
BmiI	GGNNCC	2 cut(s)	253, 262
Bpu14I	TTCGAA	1 cut(s)	300
BsaBI	GATNNNNATC	1 cut(s)	47
BsaHI	GRCGYC	2 cut(s)	138, 252
BsaI	GGTCTC	1 cut(s)	452
BsaJI	CCNNGG	1 cut(s)	247
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bse118I	RCCGGY	1 cut(s)	206
Bse8I	GATNNNNATC	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	247
BseJI	GATNNNNATC	1 cut(s)	47
BseMII	CTCAG	3 cut(s)	167, 203, 423
BseRI	GAGGAG	2 cut(s)	74, 581
Bsh1236I	CGCG	1 cut(s)	225
Bsh1285I	CGRYCG	1 cut(s)	313
BshNI	GGYRCC	1 cut(s)	251
BsiEI	CGRYCG	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	330
BsiHKCI	CYCGRG	1 cut(s)	386
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	628
BsmAI	GTCTC	1 cut(s)	452
BsmFI	GGGAC	1 cut(s)	628
Bso31I	GGTCTC	1 cut(s)	452
BsoBI	CYCGRG	1 cut(s)	386
Bsp119I	TTCGAA	1 cut(s)	300
Bsp1286I	GDGCHC	2 cut(s)	265, 330
Bsp143I	GATC	2 cut(s)	382, 516
BspACI	CCGC	4 cut(s)	63, 204, 223, 401
BspCNI	CTCAG	3 cut(s)	166, 202, 424
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	2 cut(s)	253, 262
BspT104I	TTCGAA	1 cut(s)	300
BspT107I	GGYRCC	1 cut(s)	251
BspTNI	GGTCTC	1 cut(s)	452
BsrBI	CCGCTC	1 cut(s)	401
BsrFI	RCCGGY	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	2 cut(s)	382, 516
BssNI	GRCGYC	2 cut(s)	138, 252
Bst4CI	ACNGT	3 cut(s)	248, 352, 577
Bst6I	CTCTTC	2 cut(s)	21, 41
BstACI	GRCGYC	2 cut(s)	138, 252
BstBI	TTCGAA	1 cut(s)	300
BstC8I	GCNNGC	2 cut(s)	161, 317
BstDEI	CTNAG	3 cut(s)	153, 189, 432
BstDSI	CCRYGG	1 cut(s)	247
BstFNI	CGCG	1 cut(s)	225
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	2 cut(s)	227, 254
BstKTI	GATC	2 cut(s)	385, 519
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	2 cut(s)	382, 516
BstMCI	CGRYCG	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 325
BstNSI	RCATGY	1 cut(s)	163
BstSFI	CTRYAG	1 cut(s)	520
BstUI	CGCG	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	516
BstYI	RGATCY	1 cut(s)	516
BsuI	GTATCC	1 cut(s)	193
BtgI	CCRYGG	1 cut(s)	247
Cac8I	GCNNGC	2 cut(s)	161, 317
CfoI	GCGC	2 cut(s)	227, 254
Cfr10I	RCCGGY	1 cut(s)	206
CseI	GACGC	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	2 cut(s)	160, 454
CviJI	RGCY	9 cut(s)	128, 188, 263, 291, 319, 328, 494, 571, 591
CviKI_1	RGCY	9 cut(s)	128, 188, 263, 291, 319, 328, 494, 571, 591
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	3 cut(s)	153, 189, 432
DinI	GGCGCC	1 cut(s)	253
DpnI	GATC	2 cut(s)	384, 518
DpnII	GATC	2 cut(s)	382, 516
Eam1104I	CTCTTC	2 cut(s)	21, 41
EarI	CTCTTC	2 cut(s)	21, 41
EciI	GGCGGA	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	328
Eco24I	GRGCYC	2 cut(s)	265, 330
Eco31I	GGTCTC	1 cut(s)	452
Eco32I	GATATC	1 cut(s)	280
Eco53kI	GAGCTC	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	459
Eco88I	CYCGRG	1 cut(s)	386
EcoICRI	GAGCTC	1 cut(s)	328
EcoRV	GATATC	1 cut(s)	280
EcoT38I	GRGCYC	2 cut(s)	265, 330
EgeI	GGCGCC	1 cut(s)	253
EheI	GGCGCC	1 cut(s)	253
FaeI	CATG	2 cut(s)	163, 457
FaiI	YATR	4 cut(s)	161, 395, 455, 522
FaqI	GGGAC	1 cut(s)	628
FatI	CATG	2 cut(s)	159, 453
FblI	GTMKAC	1 cut(s)	273
FriOI	GRGCYC	2 cut(s)	265, 330
GlaI	GCGC	2 cut(s)	226, 253
HaeII	RGCGCY	1 cut(s)	255
HapII	CCGG	1 cut(s)	207
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	2 cut(s)	227, 254
Hin1I	GRCGYC	2 cut(s)	138, 252
Hin1II	CATG	2 cut(s)	163, 457
Hin6I	GCGC	2 cut(s)	225, 252
HinP1I	GCGC	2 cut(s)	225, 252
HinfI	GANTC	7 cut(s)	59, 151, 424, 434, 473, 554, 580
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	2 cut(s)	68, 415
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	7 cut(s)	7, 150, 156, 192, 343, 439, 553
Hpy188III	TCNNGA	6 cut(s)	40, 212, 386, 388, 499, 512
Hpy8I	GTNNAC	1 cut(s)	274
Hpy99I	CGWCG	7 cut(s)	14, 17, 71, 143, 173, 272, 311
HpyAV	CCTTC	3 cut(s)	410, 434, 605
HpyCH4III	ACNGT	3 cut(s)	248, 352, 577
HpyCH4IV	ACGT	1 cut(s)	306
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 325
HpyF3I	CTNAG	3 cut(s)	153, 189, 432
HpySE526I	ACGT	1 cut(s)	306
Hsp92I	GRCGYC	2 cut(s)	138, 252
Hsp92II	CATG	2 cut(s)	163, 457
HspAI	GCGC	2 cut(s)	225, 252
KasI	GGCGCC	1 cut(s)	251
Kzo9I	GATC	2 cut(s)	382, 516
LmnI	GCTCC	3 cut(s)	260, 296, 568
LpnPI	CCDG	3 cut(s)	197, 220, 301
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	101, 229
MalI	GATC	2 cut(s)	384, 518
MbiI	CCGCTC	1 cut(s)	401
MboI	GATC	2 cut(s)	382, 516
MboII	GAAGA	2 cut(s)	28, 38
MfeI	CAATTG	1 cut(s)	542
MflI	RGATCY	1 cut(s)	516
MhlI	GDGCHC	2 cut(s)	265, 330
MluCI	AATT	2 cut(s)	118, 542
Mly113I	GGCGCC	1 cut(s)	252
MlyI	GAGTC	4 cut(s)	145, 433, 443, 467
MmeI	TCCRAC	2 cut(s)	238, 450
MnlI	CCTC	9 cut(s)	14, 44, 95, 172, 275, 406, 472, 559, 633
MseI	TTAA	1 cut(s)	597
MspI	CCGG	1 cut(s)	207
MunI	CAATTG	1 cut(s)	542
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	260, 325
NarI	GGCGCC	1 cut(s)	252
NdeII	GATC	2 cut(s)	382, 516
NlaIII	CATG	2 cut(s)	163, 457
NlaIV	GGNNCC	2 cut(s)	253, 262
NspI	RCATGY	1 cut(s)	163
NspV	TTCGAA	1 cut(s)	300
PaeI	GCATGC	1 cut(s)	163
PaeR7I	CTCGAG	1 cut(s)	386
PcsI	WCGNNNNNNNCGW	4 cut(s)	21, 97, 102, 273
PfeI	GAWTC	3 cut(s)	59, 554, 580
PleI	GAGTC	4 cut(s)	145, 432, 442, 467
PluTI	GGCGCC	1 cut(s)	255
PpsI	GAGTC	4 cut(s)	145, 432, 442, 467
Psp124BI	GAGCTC	1 cut(s)	330
PspN4I	GGNNCC	2 cut(s)	253, 262
PsuI	RGATCY	1 cut(s)	516
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SacI	GAGCTC	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	597
Sau3AI	GATC	2 cut(s)	382, 516
SchI	GAGTC	4 cut(s)	145, 433, 443, 467
SduI	GDGCHC	2 cut(s)	265, 330
SfcI	CTRYAG	1 cut(s)	520
SfoI	GGCGCC	1 cut(s)	253
Sfr274I	CTCGAG	1 cut(s)	386
SfuI	TTCGAA	1 cut(s)	300
SlaI	CTCGAG	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
SphI	GCATGC	1 cut(s)	163
Sse9I	AATT	2 cut(s)	118, 542
SsiI	CCGC	4 cut(s)	63, 204, 223, 401
SspDI	GGCGCC	1 cut(s)	251
SstI	GAGCTC	1 cut(s)	330
TaaI	ACNGT	3 cut(s)	248, 352, 577
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	9 cut(s)	141, 168, 300, 321, 387, 476, 498, 535, 638
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	2 cut(s)	118, 542
TfiI	GAWTC	3 cut(s)	59, 554, 580
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TspDTI	ATGAA	1 cut(s)	442
XceI	RCATGY	1 cut(s)	163
XhoI	CTCGAG	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.