pycom13g28930

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012896
Physical Location & Seq
Reverse (-)
25254399 .. 25261230
6832 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g28930.1

Sequence Viewer

Length: 663 bp
ATGTCGTCTTCAGACGAGGAGGGGTCTGGGGAGGAGTACCTGTTCAAGATCGTCATAATCGGCGACTCGGCGGTGGGGAAATCGAACTTGCTGTCCCGCTACGCACGGAACGAGTTCAACGCTCACTCAAAAGCCACGATAGGCGTGGAGTTTCAGACCCAGAGCACGGAAATCGACGGCAAAGAGGTGAAAGCTCAGATTTGGGACACCGCCGGCCAAGAACGCTTCAGGGCCGTCACCTCGGCCTACTACCGCGGCGCCGTCGGTGCTCTCATTGTCTATGATATCACCCGCAAGACCACGTTCGAGAGTGTCGGCCGCTGGCTCGATGAACTCAAGACTCATTCCGATATGACTGTCGCGATGATGCTAGTAGGGAACAAATGTGATTTAGAGAATATTAGGGCTGTGAGTGTTGAGGATGGTAGAAGCCTTGCTGAAGCAGAGGGGTTGTTCTTCATGGAGACATCTGCCCTGGACTCAACAAATGTTAAAAAGGCTTTTGAGCTTGTGATTCAAGAAATATATAACAATGTCAGCCGGAAGGTCTTGAACTCGGATACCTACAAAGCAGAGTTATCTGTGAACAGGGTCAGCCTTGTTAATAATGGAGCAGACGGATTAAAGAAAACCAAGGGCTATTTTTCTTGCTGTTCCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

221

Amino Acids

24.26

Weight (kDa)

5.25

Isoelectric Point (pI)

28.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 15 - 173 7.5e-15 ADP-ribosylation factor family
Ras PF00071 16 - 176 8.6e-63 Ras family
Roc PF08477 16 - 130 1e-34 Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1 PF01926 16 - 114 5.9e-06 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012896)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05810 AT1G05810 AT2G31680 AT2G43130
fragaria_vesca FvH4_4g11760
malus_domestica MD04G1033200.v1.1 MD13G1276500.v1.1
prunus_persica Prupe.1G181200_v2.0.a1
pyrus_communis pycom13g28930
rosa_laevigata RLG00000008596
rosa_multiflora Rmu_sc0006766.1_g000004 Rmu_sc0017774.1_g000002
rosa_roxburghii Rroxscaffold_5G00353490
rosa_rugosa Rorug04G0089700
rosa_samantha Rh4AG153400 Rh4BG151500 Rh4CG161900 Rh4DG146800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 257
AccII CGCG 2 cut(s) 255, 362
AciI CCGC 7 cut(s) 71, 97, 210, 253, 255, 292, 319
AcoI YGGCCR 2 cut(s) 214, 316
AcuI CTGAAG 2 cut(s) 211, 459
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 166
AgsI TTSAA 4 cut(s) 46, 118, 518, 553
AjnI CCWGG 1 cut(s) 474
AloI GAACNNNNNNTCC 4 cut(s) 26, 58, 77, 109
AluBI AGCT 2 cut(s) 194, 508
AluI AGCT 2 cut(s) 194, 508
Alw21I GWGCWC 2 cut(s) 167, 271
Alw26I GTCTC 1 cut(s) 458
AoxI GGCC 4 cut(s) 214, 231, 243, 316
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
Asp700I GAANNNNTTC 1 cut(s) 113
AspLEI GCGC 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 231
AsuC2I CCSGG 1 cut(s) 658
AsuHPI GGTGA 3 cut(s) 199, 229, 280
BanI GGYRCC 1 cut(s) 257
Bbv12I GWGCWC 2 cut(s) 167, 271
BccI CCATC 1 cut(s) 416
BceAI ACGGC 3 cut(s) 193, 218, 245
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BciT130I CCWGG 1 cut(s) 476
BciVI GTATCC 1 cut(s) 553
BcnI CCSGG 1 cut(s) 658
BcoDI GTCTC 1 cut(s) 458
BfaI CTAG 1 cut(s) 371
BfoI RGCGCY 1 cut(s) 261
BfuI GTATCC 1 cut(s) 553
BisI GCNGC 2 cut(s) 256, 319
BlsI GCNGC 2 cut(s) 257, 320
Bme1390I CCNGG 2 cut(s) 476, 658
BmgT120I GGNCC 1 cut(s) 231
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 2 cut(s) 476, 658
BmsI GCATC 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 658
BsaHI GRCGYC 1 cut(s) 258
BsaJI CCNNGG 4 cut(s) 240, 253, 474, 633
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse118I RCCGGY 1 cut(s) 212
BseBI CCWGG 1 cut(s) 476
BseDI CCNNGG 4 cut(s) 240, 253, 474, 633
BseGI GGATG 1 cut(s) 427
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 209
BseRI GAGGAG 2 cut(s) 32, 47
BseX3I CGGCCG 1 cut(s) 316
Bsh1236I CGCG 2 cut(s) 255, 362
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 4 cut(s) 216, 233, 245, 318
BshNI GGYRCC 1 cut(s) 257
BsiEI CGRYCG 1 cut(s) 319
BsiHKAI GWGCWC 2 cut(s) 167, 271
BsiSI CCGG 3 cut(s) 213, 541, 657
BslFI GGGAC 2 cut(s) 79, 218
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 458
BsmFI GGGAC 2 cut(s) 79, 218
BsnI GGCC 4 cut(s) 216, 233, 245, 318
Bsp1286I GDGCHC 2 cut(s) 167, 271
Bsp143I GATC 1 cut(s) 48
Bsp68I TCGCGA 1 cut(s) 362
BspACI CCGC 7 cut(s) 71, 97, 210, 253, 255, 292, 319
BspANI GGCC 4 cut(s) 216, 233, 245, 318
BspCNI CTCAG 1 cut(s) 208
BspFNI CGCG 2 cut(s) 255, 362
BspLI GGNNCC 1 cut(s) 259
BspT107I GGYRCC 1 cut(s) 257
BsrFI RCCGGY 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 4 cut(s) 240, 253, 474, 633
BssMI GATC 1 cut(s) 48
BssNI GRCGYC 1 cut(s) 258
BssT1I CCWWGG 1 cut(s) 633
Bst2UI CCWGG 1 cut(s) 476
Bst4CI ACNGT 1 cut(s) 358
BstACI GRCGYC 1 cut(s) 258
BstC8I GCNNGC 2 cut(s) 214, 323
BstDEI CTNAG 1 cut(s) 195
BstDSI CCRYGG 1 cut(s) 253
BstF5I GGATG 1 cut(s) 427
BstFNI CGCG 2 cut(s) 255, 362
BstH2I RGCGCY 1 cut(s) 261
BstHHI GCGC 1 cut(s) 260
BstKTI GATC 1 cut(s) 51
BstMAI GTCTC 1 cut(s) 458
BstMBI GATC 1 cut(s) 48
BstMCI CGRYCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 2 cut(s) 222, 266
BstNI CCWGG 1 cut(s) 476
BstSCI CCNGG 2 cut(s) 474, 656
BstUI CGCG 2 cut(s) 255, 362
BstZI CGGCCG 1 cut(s) 316
BsuI GTATCC 1 cut(s) 553
BsuRI GGCC 4 cut(s) 216, 233, 245, 318
BtgI CCRYGG 1 cut(s) 253
BtgZI GCGATG 1 cut(s) 377
BtsCI GGATG 1 cut(s) 427
BtuMI TCGCGA 1 cut(s) 362
Cac8I GCNNGC 2 cut(s) 214, 323
CfoI GCGC 1 cut(s) 260
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 1 cut(s) 231
Cfr42I CCGCGG 1 cut(s) 256
Csp6I GTAC 1 cut(s) 37
CviAII CATG 1 cut(s) 460
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 1 cut(s) 195
DinI GGCGCC 1 cut(s) 259
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
EaeI YGGCCR 2 cut(s) 214, 316
EagI CGGCCG 1 cut(s) 316
EclXI CGGCCG 1 cut(s) 316
Eco130I CCWWGG 1 cut(s) 633
Eco32I GATATC 1 cut(s) 286
Eco52I CGGCCG 1 cut(s) 316
Eco57I CTGAAG 2 cut(s) 211, 459
EcoRII CCWGG 1 cut(s) 474
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 633
EgeI GGCGCC 1 cut(s) 259
EheI GGCGCC 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 633
FaeI CATG 1 cut(s) 463
FaiI YATR 6 cut(s) 56, 282, 353, 461, 526, 528
FaqI GGGAC 2 cut(s) 79, 218
FatI CATG 1 cut(s) 459
FauI CCCGC 2 cut(s) 104, 299
Fnu4HI GCNGC 2 cut(s) 256, 319
FokI GGATG 1 cut(s) 434
Fsp4HI GCNGC 2 cut(s) 256, 319
FspBI CTAG 1 cut(s) 371
GlaI GCGC 1 cut(s) 259
GluI GCNGC 2 cut(s) 256, 319
HaeII RGCGCY 1 cut(s) 261
HaeIII GGCC 4 cut(s) 216, 233, 245, 318
HapII CCGG 3 cut(s) 213, 541, 657
HhaI GCGC 1 cut(s) 260
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 1 cut(s) 463
Hin6I GCGC 1 cut(s) 258
HinP1I GCGC 1 cut(s) 258
HinfI GANTC 4 cut(s) 65, 340, 479, 514
HpaII CCGG 3 cut(s) 213, 541, 657
HphI GGTGA 3 cut(s) 199, 229, 280
Hpy166II GTNNAC 1 cut(s) 586
Hpy188I TCNGA 5 cut(s) 13, 156, 198, 349, 559
Hpy188III TCNNGA 6 cut(s) 46, 307, 337, 361, 518, 550
Hpy8I GTNNAC 1 cut(s) 586
Hpy99I CGWCG 2 cut(s) 179, 266
HpyAV CCTTC 1 cut(s) 538
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 2 cut(s) 222, 266
HpyF3I CTNAG 1 cut(s) 195
HpySE526I ACGT 1 cut(s) 302
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 1 cut(s) 463
HspAI GCGC 1 cut(s) 258
KasI GGCGCC 1 cut(s) 257
KroI GCCGGC 1 cut(s) 212
KroNI GCCGGC 1 cut(s) 214
KspI CCGCGG 1 cut(s) 256
Kzo9I GATC 1 cut(s) 48
LmnI GCTCC 1 cut(s) 611
LweI GCATC 1 cut(s) 357
MaeI CTAG 1 cut(s) 371
MaeII ACGT 1 cut(s) 302
MaeIII GTNAC 1 cut(s) 235
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MboII GAAGA 1 cut(s) 448
MhlI GDGCHC 2 cut(s) 167, 271
Mly113I GGCGCC 1 cut(s) 258
MlyI GAGTC 3 cut(s) 59, 334, 473
MnlI CCTC 7 cut(s) 10, 13, 25, 178, 250, 412, 439
MroNI GCCGGC 1 cut(s) 212
MroXI GAANNNNTTC 1 cut(s) 113
MseI TTAA 3 cut(s) 492, 603, 623
MspA1I CMGCKG 2 cut(s) 255, 321
MspI CCGG 3 cut(s) 213, 541, 657
MspR9I CCNGG 2 cut(s) 476, 658
MvaI CCWGG 1 cut(s) 476
MvnI CGCG 2 cut(s) 255, 362
MwoI GCNNNNNNNGC 2 cut(s) 222, 266
NaeI GCCGGC 1 cut(s) 214
NarI GGCGCC 1 cut(s) 258
NciI CCSGG 1 cut(s) 658
NdeII GATC 1 cut(s) 48
NgoMIV GCCGGC 1 cut(s) 212
NlaIII CATG 1 cut(s) 463
NlaIV GGNNCC 1 cut(s) 259
NmeAIII GCCGAG 2 cut(s) 47, 221
NmuCI GTSAC 1 cut(s) 235
NruI TCGCGA 1 cut(s) 362
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PdiI GCCGGC 1 cut(s) 214
PdmI GAANNNNTTC 1 cut(s) 113
PfeI GAWTC 1 cut(s) 514
PkrI GCNGC 2 cut(s) 257, 320
PleI GAGTC 3 cut(s) 59, 334, 473
PluTI GGCGCC 1 cut(s) 261
PpsI GAGTC 3 cut(s) 59, 334, 473
Psp6I CCWGG 1 cut(s) 474
PspGI CCWGG 1 cut(s) 474
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 1 cut(s) 231
RruI TCGCGA 1 cut(s) 362
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SacII CCGCGG 1 cut(s) 256
SaqAI TTAA 3 cut(s) 492, 603, 623
SatI GCNGC 2 cut(s) 256, 319
Sau3AI GATC 1 cut(s) 48
Sau96I GGNCC 1 cut(s) 231
SchI GAGTC 3 cut(s) 59, 334, 473
ScrFI CCNGG 2 cut(s) 476, 658
SduI GDGCHC 2 cut(s) 167, 271
SetI ASST 8 cut(s) 42, 189, 196, 242, 305, 510, 549, 566
SfaNI GCATC 1 cut(s) 357
SfoI GGCGCC 1 cut(s) 259
Sfr303I CCGCGG 1 cut(s) 256
SgrBI CCGCGG 1 cut(s) 256
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
SsiI CCGC 7 cut(s) 71, 97, 210, 253, 255, 292, 319
SspDI GGCGCC 1 cut(s) 257
SspI AATATT 1 cut(s) 400
SspMI CTAG 1 cut(s) 371
StyD4I CCNGG 2 cut(s) 474, 656
StyI CCWWGG 1 cut(s) 633
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 1 cut(s) 305
TaqI TCGA 4 cut(s) 83, 174, 306, 327
TauI GCSGC 2 cut(s) 258, 321
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 3 cut(s) 492, 603, 623
Tru9I TTAA 3 cut(s) 492, 603, 623
TseFI GTSAC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 345, 448
TspGWI ACGGA 3 cut(s) 121, 182, 633
XcmI CCANNNNNNNNNTGG 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 113
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.