MD13G1276500.v1.1

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0012896
Physical Location & Seq
Reverse (-)
38499293 .. 38499697
405 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1276500.v1.1.491

Sequence Viewer

Length: 405 bp
ATGATTTTTTGGTTGTCGTACCCTCCATTTCTTGCTTTACTACTAAGTTCTTATTTGAGCTTTGCTTTAATCATTGGTGCAGCTCATTCCGATACGACTGTCGCGATGATGCTAGTAGGGAACAAATGTGATTTAGAGAATATTAGGGCTGTGAGTGTTGAGGATGGTAGAAGCCTTGCTGAAGCAGAGGGGTTGTTCTTCATGGAGACATCTGCCCTGGACTCAACAAATGTTAAAATGGCTTTTGAGCTTGTGATTCAAGAAATATATAACAATGTCAGCCGGAATGTCTTGAACTCGGATACCTACAAAGCAGAGTTATCTGTGAACAGGGTCAGCCTTGTTAATAATGGAGCAGACGGATTAAAGAAAACCCAGGGCTATTTTTCTTGCTGTTCCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

135

Amino Acids

14.65

Weight (kDa)

4.7

Isoelectric Point (pI)

29.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 29 - 90 3e-16 Ras family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012896)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05810 AT1G05810 AT2G31680 AT2G43130
fragaria_vesca FvH4_4g11760
malus_domestica MD04G1033200.v1.1 MD13G1276500.v1.1
prunus_persica Prupe.1G181200_v2.0.a1
pyrus_communis pycom13g28930
rosa_laevigata RLG00000008596
rosa_multiflora Rmu_sc0006766.1_g000004 Rmu_sc0017774.1_g000002
rosa_roxburghii Rroxscaffold_5G00353490
rosa_rugosa Rorug04G0089700
rosa_samantha Rh4AG153400 Rh4BG151500 Rh4CG161900 Rh4DG146800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 1 cut(s) 20
AgsI TTSAA 2 cut(s) 260, 295
AjnI CCWGG 2 cut(s) 216, 375
AluBI AGCT 3 cut(s) 60, 83, 250
AluI AGCT 3 cut(s) 60, 83, 250
Alw26I GTCTC 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 80
AsuC2I CCSGG 1 cut(s) 400
BaeI ACNNNNGTAYC 2 cut(s) 84, 117
BbvI GCAGC 1 cut(s) 92
BccI CCATC 1 cut(s) 158
BciT130I CCWGG 2 cut(s) 218, 377
BciVI GTATCC 1 cut(s) 295
BcnI CCSGG 1 cut(s) 400
BcoDI GTCTC 1 cut(s) 200
BfaI CTAG 1 cut(s) 113
BfuI GTATCC 1 cut(s) 295
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 3 cut(s) 218, 377, 400
BmrFI CCNGG 3 cut(s) 218, 377, 400
BmsI GCATC 1 cut(s) 99
BpuMI CCSGG 1 cut(s) 400
BsaJI CCNNGG 3 cut(s) 216, 375, 376
BseBI CCWGG 2 cut(s) 218, 377
BseDI CCNNGG 3 cut(s) 216, 375, 376
BseGI GGATG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 92
BsgI GTGCAG 1 cut(s) 99
Bsh1236I CGCG 1 cut(s) 104
BsiSI CCGG 2 cut(s) 283, 399
BsmAI GTCTC 1 cut(s) 200
Bsp68I TCGCGA 1 cut(s) 104
BspFNI CGCG 1 cut(s) 104
BssECI CCNNGG 3 cut(s) 216, 375, 376
Bst2UI CCWGG 2 cut(s) 218, 377
Bst4CI ACNGT 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 44
BstF5I GGATG 1 cut(s) 169
BstFNI CGCG 1 cut(s) 104
BstMAI GTCTC 1 cut(s) 200
BstNI CCWGG 2 cut(s) 218, 377
BstSCI CCNGG 3 cut(s) 216, 375, 398
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 92
BsuI GTATCC 1 cut(s) 295
BtgZI GCGATG 1 cut(s) 119
BtsCI GGATG 1 cut(s) 169
BtuMI TCGCGA 1 cut(s) 104
Csp6I GTAC 1 cut(s) 19
CviAII CATG 1 cut(s) 202
CviJI RGCY 9 cut(s) 60, 83, 149, 174, 242, 250, 282, 339, 381
CviKI_1 RGCY 9 cut(s) 60, 83, 149, 174, 242, 250, 282, 339, 381
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 201
EcoRII CCWGG 2 cut(s) 216, 375
FaeI CATG 1 cut(s) 205
FaiI YATR 3 cut(s) 203, 268, 270
FatI CATG 1 cut(s) 201
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 1 cut(s) 113
GluI GCNGC 1 cut(s) 81
HapII CCGG 2 cut(s) 283, 399
Hin1II CATG 1 cut(s) 205
HinfI GANTC 2 cut(s) 221, 256
HpaII CCGG 2 cut(s) 283, 399
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 2 cut(s) 91, 301
Hpy188III TCNNGA 3 cut(s) 103, 260, 292
Hpy8I GTNNAC 1 cut(s) 328
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 44
Hsp92II CATG 1 cut(s) 205
LmnI GCTCC 1 cut(s) 353
LpnPI CCDG 6 cut(s) 203, 230, 296, 316, 362, 389
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 1 cut(s) 99
MaeI CTAG 1 cut(s) 113
MboII GAAGA 1 cut(s) 190
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 3 cut(s) 33, 154, 181
MseI TTAA 4 cut(s) 68, 234, 345, 365
MspI CCGG 2 cut(s) 283, 399
MspR9I CCNGG 3 cut(s) 218, 377, 400
MvaI CCWGG 2 cut(s) 218, 377
MvnI CGCG 1 cut(s) 104
NciI CCSGG 1 cut(s) 400
NlaIII CATG 1 cut(s) 205
NruI TCGCGA 1 cut(s) 104
PasI CCCWGGG 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PfeI GAWTC 1 cut(s) 256
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
Psp6I CCWGG 2 cut(s) 216, 375
PspGI CCWGG 2 cut(s) 216, 375
RruI TCGCGA 1 cut(s) 104
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SaqAI TTAA 4 cut(s) 68, 234, 345, 365
SatI GCNGC 1 cut(s) 81
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 3 cut(s) 218, 377, 400
SetI ASST 4 cut(s) 62, 85, 252, 308
SfaNI GCATC 1 cut(s) 99
SspI AATATT 1 cut(s) 142
SspMI CTAG 1 cut(s) 113
StyD4I CCNGG 3 cut(s) 216, 375, 398
TaaI ACNGT 1 cut(s) 100
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 4 cut(s) 68, 234, 345, 365
Tru9I TTAA 4 cut(s) 68, 234, 345, 365
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 190
TspGWI ACGGA 1 cut(s) 375
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.