Prupe.1G181200_v2.0.a1

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012896
Physical Location & Seq
Reverse (-)
15827918 .. 15832786
4869 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G181200.1

Sequence Viewer

Length: 663 bp
ATGTCGTCTTCAGACGAGGAGGGGTCAGGGGAAGAGTACCTGTTTAAGATCGTGATAATTGGAGACTCCGCGGTCGGGAAATCGAACTTGCTGTCTCGCTATGCGCGCAACGAGTTCAATGCGCACTCCAAGGCCACAATTGGGGTGGAGTTTCAGACACAGAGCATGGAAATCGATGGCAAAGAGGTCAAGGCTCAGATTTGGGACACTGCTGGCCAAGAGCGCTTCAGGGCTGTCACCTCTGCCTACTACCGTGGCGCTGTTGGAGCTCTCATTGTCTATGATATCACTCGCAAGACCACTTTTGAGAGCGTCGGTCGCTGGCTCGATGAGCTCAAGACTCATTCGGATACAACTGTGGCAATGATGTTAGTGGGGAACAAATGTGATTTAGAGAATATTAGGGATGTCAGTGTTGAGGATGGTAAAGGCCTTGCTGAAGCAGAGGGGTTGTTCTTCATGGAGACATCTGCCCTGGACTCAACAAATGTTATAAAGGCATTTGAGCTTGTTATTCAAGAAATATATAACAATGTCAGCCGGAAGGTCTTGAACTCAGACACTTACAAAGCAGAATTATCTGTCAACAGGGTAAGCCTCGTTAATAACGGGGCAGATGGATCAAAGAAAAGTCAGGGCTACTTTTCTTGCTGTTCCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

221

Amino Acids

24.19

Weight (kDa)

4.94

Isoelectric Point (pI)

25.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012896)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05810 AT1G05810 AT2G31680 AT2G43130
fragaria_vesca FvH4_4g11760
malus_domestica MD04G1033200.v1.1 MD13G1276500.v1.1
prunus_persica Prupe.1G181200_v2.0.a1
pyrus_communis pycom13g28930
rosa_laevigata RLG00000008596
rosa_multiflora Rmu_sc0006766.1_g000004 Rmu_sc0017774.1_g000002
rosa_roxburghii Rroxscaffold_5G00353490
rosa_rugosa Rorug04G0089700
rosa_samantha Rh4AG153400 Rh4BG151500 Rh4CG161900 Rh4DG146800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 494
AasI GACNNNNNNGTC 1 cut(s) 71
Acc16I TGCGCA 1 cut(s) 123
AccII CGCG 2 cut(s) 71, 106
AciI CCGC 2 cut(s) 69, 71
AclWI GGATC 1 cut(s) 628
AcoI YGGCCR 1 cut(s) 214
AcuI CTGAAG 2 cut(s) 211, 459
AfaI GTAC 1 cut(s) 38
AfeI AGCGCT 1 cut(s) 224
AfiI CCNNNNNNNGG 2 cut(s) 75, 141
AgsI TTSAA 3 cut(s) 118, 518, 553
AjnI CCWGG 1 cut(s) 474
AluBI AGCT 3 cut(s) 269, 334, 508
AluI AGCT 3 cut(s) 269, 334, 508
Alw21I GWGCWC 2 cut(s) 271, 336
Alw26I GTCTC 3 cut(s) 57, 99, 458
AlwI GGATC 1 cut(s) 628
Aor51HI AGCGCT 1 cut(s) 224
AoxI GGCC 3 cut(s) 132, 214, 430
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
AspLEI GCGC 5 cut(s) 106, 108, 124, 225, 260
AsuC2I CCSGG 1 cut(s) 658
AsuHPI GGTGA 1 cut(s) 229
BaeI ACNNNNGTAYC 2 cut(s) 342, 375
BalI TGGCCA 1 cut(s) 216
BanII GRGCYC 2 cut(s) 271, 336
Bbv12I GWGCWC 2 cut(s) 271, 336
BccI CCATC 3 cut(s) 170, 416, 611
BcgI CGANNNNNNTGC 4 cut(s) 101, 135, 154, 188
BciT130I CCWGG 1 cut(s) 476
BciVI GTATCC 1 cut(s) 343
BcnI CCSGG 1 cut(s) 658
BcoDI GTCTC 3 cut(s) 57, 99, 458
BfoI RGCGCY 2 cut(s) 226, 261
BfuI GTATCC 1 cut(s) 343
Bme1390I CCNGG 2 cut(s) 476, 658
BmrFI CCNGG 2 cut(s) 476, 658
BpuEI CTTGAG 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 658
Bsa29I ATCGAT 1 cut(s) 174
BsaJI CCNNGG 4 cut(s) 69, 129, 253, 474
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 141
Bse3DI GCAATG 1 cut(s) 369
BseBI CCWGG 1 cut(s) 476
BseCI ATCGAT 1 cut(s) 174
BseDI CCNNGG 4 cut(s) 69, 129, 253, 474
BseGI GGATG 2 cut(s) 412, 427
BseLI CCNNNNNNNGG 2 cut(s) 75, 141
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 2 cut(s) 209, 570
BsePI GCGCGC 1 cut(s) 104
BseRI GAGGAG 1 cut(s) 32
Bsh1236I CGCG 2 cut(s) 71, 106
Bsh1285I CGRYCG 2 cut(s) 75, 319
BshFI GGCC 3 cut(s) 134, 216, 432
BshVI ATCGAT 1 cut(s) 174
BsiEI CGRYCG 2 cut(s) 75, 319
BsiHKAI GWGCWC 2 cut(s) 271, 336
BsiSI CCGG 2 cut(s) 541, 657
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 2 cut(s) 75, 141
BsmAI GTCTC 3 cut(s) 57, 99, 458
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 3 cut(s) 134, 216, 432
Bsp1286I GDGCHC 2 cut(s) 271, 336
Bsp143I GATC 2 cut(s) 48, 620
BspACI CCGC 2 cut(s) 69, 71
BspANI GGCC 3 cut(s) 134, 216, 432
BspCNI CTCAG 2 cut(s) 208, 569
BspDI ATCGAT 1 cut(s) 174
BspFNI CGCG 2 cut(s) 71, 106
BspPI GGATC 1 cut(s) 628
BsrDI GCAATG 1 cut(s) 369
BssECI CCNNGG 4 cut(s) 69, 129, 253, 474
BssHII GCGCGC 1 cut(s) 104
BssMI GATC 2 cut(s) 48, 620
BssT1I CCWWGG 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 476
Bst4CI ACNGT 2 cut(s) 254, 358
Bst6I CTCTTC 1 cut(s) 27
BstC8I GCNNGC 3 cut(s) 106, 214, 323
BstDEI CTNAG 2 cut(s) 195, 556
BstDSI CCRYGG 2 cut(s) 69, 253
BstF5I GGATG 2 cut(s) 412, 427
BstFNI CGCG 2 cut(s) 71, 106
BstH2I RGCGCY 2 cut(s) 226, 261
BstHHI GCGC 5 cut(s) 106, 108, 124, 225, 260
BstKTI GATC 2 cut(s) 51, 623
BstMAI GTCTC 3 cut(s) 57, 99, 458
BstMBI GATC 2 cut(s) 48, 620
BstMCI CGRYCG 2 cut(s) 75, 319
BstMWI GCNNNNNNNGC 5 cut(s) 105, 222, 266, 318, 331
BstNI CCWGG 1 cut(s) 476
BstSCI CCNGG 2 cut(s) 474, 656
BstUI CGCG 2 cut(s) 71, 106
Bsu15I ATCGAT 1 cut(s) 174
BsuI GTATCC 1 cut(s) 343
BsuRI GGCC 3 cut(s) 134, 216, 432
BsuTUI ATCGAT 1 cut(s) 174
BtgI CCRYGG 2 cut(s) 69, 253
BtsCI GGATG 2 cut(s) 412, 427
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 2 cut(s) 207, 418
Cac8I GCNNGC 3 cut(s) 106, 214, 323
CfoI GCGC 5 cut(s) 106, 108, 124, 225, 260
Cfr42I CCGCGG 1 cut(s) 72
ClaI ATCGAT 1 cut(s) 174
CseI GACGC 1 cut(s) 301
Csp6I GTAC 1 cut(s) 37
CspCI CAANNNNNGTGG 2 cut(s) 126, 161
CviAII CATG 2 cut(s) 166, 460
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 2 cut(s) 195, 556
DpnI GATC 2 cut(s) 50, 622
DpnII GATC 2 cut(s) 48, 620
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Ecl136II GAGCTC 2 cut(s) 269, 334
Eco130I CCWWGG 1 cut(s) 129
Eco147I AGGCCT 1 cut(s) 432
Eco24I GRGCYC 2 cut(s) 271, 336
Eco32I GATATC 1 cut(s) 286
Eco47III AGCGCT 1 cut(s) 224
Eco53kI GAGCTC 2 cut(s) 269, 334
Eco57I CTGAAG 2 cut(s) 211, 459
EcoICRI GAGCTC 2 cut(s) 269, 334
EcoRII CCWGG 1 cut(s) 474
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 129
EcoT38I GRGCYC 2 cut(s) 271, 336
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 2 cut(s) 169, 463
FaiI YATR 7 cut(s) 102, 167, 282, 461, 494, 526, 528
FaqI GGGAC 1 cut(s) 218
FatI CATG 2 cut(s) 165, 459
FokI GGATG 2 cut(s) 419, 434
FriOI GRGCYC 2 cut(s) 271, 336
FspAI RTGCGCAY 1 cut(s) 123
FspI TGCGCA 1 cut(s) 123
GlaI GCGC 5 cut(s) 105, 107, 123, 224, 259
HaeII RGCGCY 2 cut(s) 226, 261
HaeIII GGCC 3 cut(s) 134, 216, 432
HapII CCGG 2 cut(s) 541, 657
HgaI GACGC 1 cut(s) 301
HhaI GCGC 5 cut(s) 106, 108, 124, 225, 260
Hin1II CATG 2 cut(s) 169, 463
Hin6I GCGC 5 cut(s) 104, 106, 122, 223, 258
HinP1I GCGC 5 cut(s) 104, 106, 122, 223, 258
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HinfI GANTC 3 cut(s) 65, 340, 479
HpaII CCGG 2 cut(s) 541, 657
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 586
Hpy188I TCNGA 5 cut(s) 13, 156, 198, 349, 559
Hpy188III TCNNGA 5 cut(s) 52, 76, 337, 518, 550
Hpy8I GTNNAC 1 cut(s) 586
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 1 cut(s) 538
HpyCH4III ACNGT 2 cut(s) 254, 358
HpyF10VI GCNNNNNNNGC 5 cut(s) 105, 222, 266, 318, 331
HpyF3I CTNAG 2 cut(s) 195, 556
Hsp92II CATG 2 cut(s) 169, 463
HspAI GCGC 5 cut(s) 104, 106, 122, 223, 258
KspI CCGCGG 1 cut(s) 72
Kzo9I GATC 2 cut(s) 48, 620
LmnI GCTCC 1 cut(s) 266
MaeIII GTNAC 1 cut(s) 235
MalI GATC 2 cut(s) 50, 622
MboI GATC 2 cut(s) 48, 620
MboII GAAGA 2 cut(s) 44, 448
MfeI CAATTG 1 cut(s) 138
MhlI GDGCHC 2 cut(s) 271, 336
MlsI TGGCCA 1 cut(s) 216
MluCI AATT 3 cut(s) 57, 138, 575
MluNI TGGCCA 1 cut(s) 216
MlyI GAGTC 3 cut(s) 59, 334, 473
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 7 cut(s) 10, 13, 178, 250, 412, 439, 608
Mox20I TGGCCA 1 cut(s) 216
MscI TGGCCA 1 cut(s) 216
MseI TTAA 2 cut(s) 45, 603
Msp20I TGGCCA 1 cut(s) 216
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 2 cut(s) 541, 657
MspR9I CCNGG 2 cut(s) 476, 658
MunI CAATTG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 476
MvnI CGCG 2 cut(s) 71, 106
MwoI GCNNNNNNNGC 5 cut(s) 105, 222, 266, 318, 331
NciI CCSGG 1 cut(s) 658
NdeII GATC 2 cut(s) 48, 620
NlaIII CATG 2 cut(s) 169, 463
NmuCI GTSAC 1 cut(s) 235
NsbI TGCGCA 1 cut(s) 123
PauI GCGCGC 1 cut(s) 104
PceI AGGCCT 1 cut(s) 432
PleI GAGTC 3 cut(s) 59, 334, 473
PpsI GAGTC 3 cut(s) 59, 334, 473
PsiI TTATAA 1 cut(s) 494
Psp124BI GAGCTC 2 cut(s) 271, 336
Psp6I CCWGG 1 cut(s) 474
PspGI CCWGG 1 cut(s) 474
PteI GCGCGC 1 cut(s) 104
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SacI GAGCTC 2 cut(s) 271, 336
SacII CCGCGG 1 cut(s) 72
SaqAI TTAA 2 cut(s) 45, 603
Sau3AI GATC 2 cut(s) 48, 620
SchI GAGTC 3 cut(s) 59, 334, 473
ScrFI CCNGG 2 cut(s) 476, 658
SduI GDGCHC 2 cut(s) 271, 336
SetI ASST 7 cut(s) 42, 189, 242, 271, 336, 510, 549
Sfr303I CCGCGG 1 cut(s) 72
SgrBI CCGCGG 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 3 cut(s) 57, 138, 575
SseBI AGGCCT 1 cut(s) 432
SsiI CCGC 2 cut(s) 69, 71
SspI AATATT 1 cut(s) 400
SstI GAGCTC 2 cut(s) 271, 336
StuI AGGCCT 1 cut(s) 432
StyD4I CCNGG 2 cut(s) 474, 656
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 2 cut(s) 254, 358
TaqI TCGA 3 cut(s) 83, 174, 327
TaqII GACCGA 1 cut(s) 305
TasI AATT 3 cut(s) 57, 138, 575
Tru1I TTAA 2 cut(s) 45, 603
Tru9I TTAA 2 cut(s) 45, 603
TscAI CASTG 2 cut(s) 214, 418
TseFI GTSAC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 1 cut(s) 448
TspRI CASTG 2 cut(s) 214, 418
XcmI CCANNNNNNNNNTGG 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.